View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0618_high_15 (Length: 285)
Name: NF0618_high_15
Description: NF0618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0618_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 19395056 - 19395312
Alignment:
| Q |
1 |
taagttgttctttgggattgtccacacctcatgtatctctctacatattagtttatgcagatggtttaagaataagagtttgtttagaaactttgctgct |
100 |
Q |
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| T |
19395056 |
taagttgttctttgggctagtgcacacctcatgtatctctctacatattagtttatgcagatggtttaagaataagagtttgtttagaaactttgctgct |
19395155 |
T |
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| Q |
101 |
tccaatatgctttgcacattttgagcatatcatatgtagtgtttgtataaaaactttgctcccttccttcagctataaattattctctaatactagcatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19395156 |
tccaatatgctttgcacattttgagcatatcatatgtagtgtttgtataaaaactttgctcccttccttcagctataaattattctctaatactagcatc |
19395255 |
T |
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| Q |
201 |
aagttattgtttttatagctactcttcacaatcagttggttacatttggttgtaagt |
257 |
Q |
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| T |
19395256 |
aagttattgtttttatagctactcttcacaatcagttggttacatttggttgtaagt |
19395312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 18872045 - 18871848
Alignment:
| Q |
1 |
taagttgttctttgggattgtccacacctcatgtatctctctacatattagtttatgcagatggtttaagaataagagtttgtttagaaactttgctgct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18872045 |
taagttgttctttgggattgtccacacctcatgtatctctctacatattagtttatgcagatggtttaagaataagagtttgtgtagaaactttgctgct |
18871946 |
T |
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| Q |
101 |
tccaatatgctttgcacattttgagcatatcatatgtagtgtttgtataaaaactttgctcccttccttcagctataaattattctctaatactagcat |
199 |
Q |
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| T |
18871945 |
tccaatatgctttggacatttt-ctctaatcatatgtagcgtttgtataaaaactttgctcccttccttcagctctaaattatgctctaatactagcat |
18871848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 19382885 - 19382973
Alignment:
| Q |
34 |
tatctctctacatattagtttatgcag-atggtttaagaataagagtttgtttagaaactttgctgcttccaatatgctttgcacattt |
121 |
Q |
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||||| || |||||||||||||||||| |||||||||||| | |||||||| |||| ||||||||||||||||||||||||| |||||| |
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| T |
19382885 |
tatctatcaacatattagtttatgcaggatggtttaagaacatgagtttgtgtagacactttgctgcttccaatatgctttggacattt |
19382973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 19466089 - 19466132
Alignment:
| Q |
1 |
taagttgttctttgggattgtccacacctcatgtatctctctac |
44 |
Q |
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| T |
19466089 |
taagttgttctttgggattgtccacacctcatgtatctctctac |
19466132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 19466247 - 19466312
Alignment:
| Q |
36 |
tctctctacatattagtttatgcagatggtttaagaataagagtttgtttagaaactttgctgctt |
101 |
Q |
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| T |
19466247 |
tctctctatatattaggttatgcagatagttgcagaataagagtttgtgtagaaactttgctgctt |
19466312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 18148695 - 18148760
Alignment:
| Q |
36 |
tctctctacatattagtttatgcagatggtttaagaataagagtttgtttagaaactttgctgctt |
101 |
Q |
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||||| || |||||||||||||||||| ||| ||||||||||||||| |||||| |||||||||| |
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| T |
18148695 |
tctctatatatattagtttatgcagatagttgcagaataagagtttgtgtagaaattttgctgctt |
18148760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 17725553 - 17725508
Alignment:
| Q |
50 |
agtttatgcagatggtttaagaataagagtttgtttagaaactttg |
95 |
Q |
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| T |
17725553 |
agtttatgcagatggttgtagaataagagtttgtgtagaaactttg |
17725508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 19026782 - 19026737
Alignment:
| Q |
50 |
agtttatgcagatggtttaagaataagagtttgtttagaaactttg |
95 |
Q |
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| T |
19026782 |
agtttatgcagatggttgtagaataagagtttgtgtagaaactttg |
19026737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19382802 - 19382843
Alignment:
| Q |
1 |
taagttgttctttgggattgtccacacctcatgtatctctct |
42 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
19382802 |
taagttgttctttgggcttggccacacctcatgtatctctct |
19382843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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