View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0618_high_18 (Length: 262)

Name: NF0618_high_18
Description: NF0618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0618_high_18
NF0618_high_18
[»] chr7 (1 HSPs)
chr7 (30-259)||(32414228-32414457)
[»] chr3 (5 HSPs)
chr3 (133-258)||(13485325-13485450)
chr3 (119-234)||(4150201-4150316)
chr3 (119-234)||(4165970-4166085)
chr3 (133-220)||(13490286-13490373)
chr3 (44-88)||(13490198-13490242)
[»] chr1 (2 HSPs)
chr1 (132-230)||(14288276-14288374)
chr1 (134-218)||(28927836-28927920)
[»] chr5 (1 HSPs)
chr5 (133-234)||(28091696-28091797)
[»] scaffold0210 (1 HSPs)
scaffold0210 (144-220)||(15739-15815)
[»] chr2 (1 HSPs)
chr2 (44-98)||(7227489-7227543)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 32414457 - 32414228
Alignment:
Q  30 gaagaaactattagtgattcaatattagcaagctcaagcagccagtcgagtagaaccaaatgagtatccccatatctctgacgccatttctacgtcaatt 129  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32414457 gaagaaactattagtgattcaatattaacaagctcaagcagccagtcgagtagaaccaaatgagtatccccatatctctgacgccatttctacgtcaatt 32414358  T
Q  130 ttcacatgtttgatagaagagagattgctcttgctcccgtagagtttctgaacaggaatacccctaaaatcaaagctacaaagacttggagctgatagct 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32414357 ttcacatgtttgatagaagagagattgctcttgctcccgtagagtttctgaacaggaatacccctaaaatcaaagctacaaagacttggagctgatagct 32414258  T
Q  230 cgattccaaaagatttctcaggatcataat 259  Q
    ||||||||||||||||||||||||||||||    
T  32414257 cgattccaaaagatttctcaggatcataat 32414228  T

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Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 133 - 258
Target Start/End: Original strand, 13485325 - 13485450
Alignment:
Q  133 acatgtttgatagaagagagattgctcttgctcccgtagagtttctgaacaggaatacccctaaaatcaaagctacaaagacttggagctgatagctcga 232  Q
    |||||||||||||||||||||||||||||| |||| | ||||||||||| |||||||||   |||||||||| | || ||||||||||  ||||||||||    
T  13485325 acatgtttgatagaagagagattgctcttgatcccatggagtttctgaataggaataccatgaaaatcaaaggtgcagagacttggagtagatagctcga 13485424  T
Q  233 ttccaaaagatttctcaggatcataa 258  Q
    |||||||| |  |||||||| |||||    
T  13485425 ttccaaaataggtctcaggagcataa 13485450  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 119 - 234
Target Start/End: Complemental strand, 4150316 - 4150201
Alignment:
Q  119 ctacgtcaattttcacatgtttgatagaagagagattgctcttgctcccgtagagtttctgaacaggaatacccctaaaatcaaagctacaaagacttgg 218  Q
    |||| |||||||| |||||||||||||||||||||||| | ||| ||||   ||||||||||| |||| ||||| |||||||||||||||  ||||||||    
T  4150316 ctacatcaatttttacatgtttgatagaagagagattgttattgttcccactgagtttctgaataggattacccttaaaatcaaagctacggagacttgg 4150217  T
Q  219 agctgatagctcgatt 234  Q
    ||  |||| |||||||    
T  4150216 agtagataactcgatt 4150201  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 119 - 234
Target Start/End: Complemental strand, 4166085 - 4165970
Alignment:
Q  119 ctacgtcaattttcacatgtttgatagaagagagattgctcttgctcccgtagagtttctgaacaggaatacccctaaaatcaaagctacaaagacttgg 218  Q
    |||| |||||||| |||||||||||||||||||||||| | ||| ||||   ||||||||||| |||| ||||| |||||||||||||||  ||||||||    
T  4166085 ctacatcaatttttacatgtttgatagaagagagattgttattgttcccactgagtttctgaataggattacccttaaaatcaaagctacggagacttgg 4165986  T
Q  219 agctgatagctcgatt 234  Q
    ||  |||| |||||||    
T  4165985 agtagataactcgatt 4165970  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 13490286 - 13490373
Alignment:
Q  133 acatgtttgatagaagagagattgctcttgctcccgtagagtttctgaacaggaatacccctaaaatcaaagctacaaagacttggag 220  Q
    |||||||| |||||||||||||| ||||||||||  | ||||||||||| |||||||||   ||| |||||| |||||||||||||||    
T  13490286 acatgtttaatagaagagagatttctcttgctccgatggagtttctgaataggaataccatgaaactcaaaggtacaaagacttggag 13490373  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 13490198 - 13490242
Alignment:
Q  44 tgattcaatattagcaagctcaagcagccagtcgagtagaaccaa 88  Q
    |||||||||||||||||||||||  ||||||| ||| ||||||||    
T  13490198 tgattcaatattagcaagctcaactagccagttgagcagaaccaa 13490242  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 230
Target Start/End: Original strand, 14288276 - 14288374
Alignment:
Q  132 cacatgtttgatagaagagagattgctcttgctcccgtagagtttctgaacaggaatacccctaaaatcaaagctacaaagacttggagctgatagctc 230  Q
    ||||||||||||||||||||||||| | || |||||   |||||| |||| |||| |||||||||||| |||| |||| ||||||||||  ||||||||    
T  14288276 cacatgtttgatagaagagagattgattttactcccacggagtttttgaagaggagtacccctaaaataaaagttacagagacttggagtggatagctc 14288374  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 28927836 - 28927920
Alignment:
Q  134 catgtttgatagaagagagattgctcttgctcccgtagagtttctgaacaggaatacccctaaaatcaaagctacaaagacttgg 218  Q
    |||| ||||||||||||||||||||||| |||||  |||||||| ||| |||  || | | ||| |||||| |||||||| ||||    
T  28927836 catgcttgatagaagagagattgctcttactcccacagagtttcggaagaggtgtaactccaaattcaaaggtacaaagatttgg 28927920  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 234
Target Start/End: Complemental strand, 28091797 - 28091696
Alignment:
Q  133 acatgtttgatagaagagagattgctcttgctcccgtagagtttctgaacaggaatacccctaaaatcaaagctacaaagacttggagctgatagctcga 232  Q
    |||||||||||||||| ||||||| |||||||||| |||||||| |||| ||||  |||  |||||  |||| |||||||| ||||||  |||| |||||    
T  28091797 acatgtttgatagaagcgagattggtcttgctcccatagagtttgtgaaaaggagaaccaataaaagtaaaggtacaaagatttggagtagataactcga 28091698  T
Q  233 tt 234  Q
    ||    
T  28091697 tt 28091696  T

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Target: scaffold0210 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 15739 - 15815
Alignment:
Q  144 agaagagagattgctcttgctcccgtagagtttctgaacaggaatacccctaaaatcaaagctacaaagacttggag 220  Q
    ||||||||||||||  ||||| ||  | ||||| |||| |||||||||| |||||||||||||| ||||||||||||    
T  15739 agaagagagattgcatttgcttccacatagtttttgaagaggaatacccgtaaaatcaaagctataaagacttggag 15815  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 7227543 - 7227489
Alignment:
Q  44 tgattcaatattagcaagctcaagcagccagtcgagtagaaccaaatgagtatcc 98  Q
    ||||||||||||||||||||||| |||||||  || |||||||||| ||||||||    
T  7227543 tgattcaatattagcaagctcaatcagccagctgaatagaaccaaaggagtatcc 7227489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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