View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0618_high_7 (Length: 371)
Name: NF0618_high_7
Description: NF0618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0618_high_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 30 - 359
Target Start/End: Complemental strand, 17166829 - 17166500
Alignment:
| Q |
30 |
ttattttcttatgtaaagaaaaatttgccttcatctttaccaatagtgatgatataatacatgctgcaagtgaattagcttatcttcttggtataacaat |
129 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
17166829 |
ttattttcttatgcaaagaaaaatttgccttcatctttaccaatagtgatgatataatacatgctgcaagtgaattagcttaccttcttggtatgacaat |
17166730 |
T |
|
| Q |
130 |
ggttatcaacagtatttcacaaaccatatcaggttataatttacttgcttttggattagaaaaagtttaatctaagtttaattgcagttttgaccccttt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17166729 |
ggttatcaacagtatttcacaaaccatatcaggttataatttacttgcttttggactagaaaaagtttaatctaagtttaattgcagttttgaccccttt |
17166630 |
T |
|
| Q |
230 |
attttattagagtaaagaaaatagtctctcgttttcaaaatcgaactttttggtcatttatataggtgtggtaattggatgtgggtggcaagttatggtt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17166629 |
attttattagagtaaagaaaatagtctctcgttttcaaaatcgaactttttggtcatttatataggtgtggtaattggatgtgggtggcaagttatggtt |
17166530 |
T |
|
| Q |
330 |
ggttacataaatttggcatgctattatatt |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
17166529 |
ggttacataaatttggcatgctattatatt |
17166500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 17149183 - 17149013
Alignment:
| Q |
30 |
ttattttcttatgtaaagaaaaatttgccttcatctttaccaatagtgatgatataatacatgctgcaagtgaattagcttatcttcttggtataacaat |
129 |
Q |
| |
|
|||||||||| |||||||||| ||||| |||||||||||||| ||||||||| | ||||||||||||||||||||||| || |||||||||||||| || |
|
|
| T |
17149183 |
ttattttcttgagtaaagaaaagtttgcattcatctttaccaacagtgatgatttgatacatgctgcaagtgaattagcataccttcttggtataaccat |
17149084 |
T |
|
| Q |
130 |
ggttatcaacagtatttcacaaaccatatcaggttataatttacttgctt-ttggattagaaaaagtttaat |
200 |
Q |
| |
|
||||||||||||||| |||||||| || |||||| || | |||||||||| | || ||||||||||||||| |
|
|
| T |
17149083 |
ggttatcaacagtatctcacaaactatttcaggtgatta-ttacttgcttggttgactagaaaaagtttaat |
17149013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 17135402 - 17135269
Alignment:
| Q |
30 |
ttattttcttatgtaaagaaaaatttgccttcatctttaccaatagtgatgatataatacatgctgcaagtgaattagcttatcttcttggtataacaat |
129 |
Q |
| |
|
|||||||||| | ||| || |||||||| |||||||||||| |||| ||||| ||||||||||| ||||||||||| ||| ||||||||||||| || |
|
|
| T |
17135402 |
ttattttcttgagcaaacaagaatttgccaccatctttaccaaaagtgtggatatgatacatgctgctagtgaattagcatattttcttggtataaccat |
17135303 |
T |
|
| Q |
130 |
ggttatcaacagtatttcacaaaccatatcaggt |
163 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||| |
|
|
| T |
17135302 |
ggttctcaacagtatttcacaaactatatcaggt |
17135269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 292 - 359
Target Start/End: Complemental strand, 17148823 - 17148756
Alignment:
| Q |
292 |
taggtgtggtaattggatgtgggtggcaagttatggttggttacataaatttggcatgctattatatt |
359 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
17148823 |
taggtgtggtcattggatgtggatggcaagttatggttggttacataaacttggcatgttattatatt |
17148756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 290 - 355
Target Start/End: Complemental strand, 17134965 - 17134900
Alignment:
| Q |
290 |
tataggtgtggtaattggatgtgggtggcaagttatggttggttacataaatttggcatgctatta |
355 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| ||| ||||| |
|
|
| T |
17134965 |
tataggtgtggtcattggatgtggatggcaagttatggttggttacataaacttgggatgttatta |
17134900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3069 times since January 2019
Visitors: 3831