View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0618_low_13 (Length: 340)
Name: NF0618_low_13
Description: NF0618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0618_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 330
Target Start/End: Original strand, 43964012 - 43964321
Alignment:
| Q |
20 |
catcatcaccaccataagaaggtttgatattttcaccagtaacaatgctgacatttccagccaataaaccatgaagttcatatgccatctgaagttagag |
119 |
Q |
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| T |
43964012 |
catcatcaccaccataagaaggtttgatattttcaccagtaacaatgctgacatttccagccaataaaccatgaagttcatatgccatctgaagttagag |
43964111 |
T |
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| Q |
120 |
ttaaacattattaatatactatttttcttaatnnnnnnnnnngagttgcatttcatatgcaaagataatctagcccaagatactgtgaaatgtatgaaaa |
219 |
Q |
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| T |
43964112 |
ttaaacattattaatatactatttttcttaataaaaaaaaa-gagttgcatttcatatccaaagataatctagcccaagatactgtgaaatgtatgaaaa |
43964210 |
T |
|
| Q |
220 |
caatgtgctcacattgtgaaatatgtagcatatacactctggcatgaagcgaagattggacgcttcaccccatattagaagatacaagcccatataaagc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43964211 |
caatgtgctcacattgtgaaatatgtagcatatacactctggcatgaagcgaagattggacgcttcaccccatatgagaagatacaagcccatataaagc |
43964310 |
T |
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| Q |
320 |
aactttctctg |
330 |
Q |
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||||||||||| |
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| T |
43964311 |
aactttctctg |
43964321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 39166514 - 39166603
Alignment:
| Q |
22 |
tcatcaccaccataagaaggtttgatattttcaccagtaacaatgctgacatttccagccaataaaccatgaagttcatatgccatctga |
111 |
Q |
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| T |
39166514 |
tcatctccaccataagaaggcttgatattttcaccagtgacaatgctgacatttccagccaataaaccatgcagttcatatgccatctga |
39166603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 227 - 332
Target Start/End: Original strand, 39166736 - 39166841
Alignment:
| Q |
227 |
ctcacattgtgaaatatgtagcatatacactctggcatgaagcgaagattggacgcttcaccccatattagaagatacaagcccatataaagcaactttc |
326 |
Q |
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||||||||||||||||| ||||| | ||||||||||||||| |||| ||| |||||||||||||| || ||||||||||| ||||||||||||||||| | |
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| T |
39166736 |
ctcacattgtgaaatatatagcacagacactctggcatgaatcgaacatttgacgcttcaccccaaatgagaagatacaatcccatataaagcaacttcc |
39166835 |
T |
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| Q |
327 |
tctgct |
332 |
Q |
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|||||| |
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| T |
39166836 |
tctgct |
39166841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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