View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0618_low_15 (Length: 321)
Name: NF0618_low_15
Description: NF0618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0618_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 48415824 - 48415684
Alignment:
| Q |
8 |
cgaataatatcaacatttttatcaatcacatgaggcacaccagcataaatttcaaccatcacaacaacaacaaacacattctttgggtgacattattgta |
107 |
Q |
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| T |
48415824 |
cgaagaatatcaacatttttatcaatcacatgaggtacaccagcataaatttcaaccatcacaacaacaacaaacacattctttgggtgacattattgta |
48415725 |
T |
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| Q |
108 |
aatcgttacatcgaatgcgaaggatccaatgccagagtatc |
148 |
Q |
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| T |
48415724 |
aatcgttacattgaatgcgaaggatccaatgccagagtatc |
48415684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 48415604 - 48415557
Alignment:
| Q |
222 |
ctcaacatatagttatatagaccgttctttataaaactaacaccatca |
269 |
Q |
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| T |
48415604 |
ctcaacatatagttatatagaccgttctttataaaactaacaccatca |
48415557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 17166779 - 17166829
Alignment:
| Q |
265 |
catcactattggtaaagatgaaggcaaatttttctttacataagaaaataa |
315 |
Q |
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| T |
17166779 |
catcactattggtaaagatgaaggcaaatttttctttgcataagaaaataa |
17166829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 17149133 - 17149183
Alignment:
| Q |
265 |
catcactattggtaaagatgaaggcaaatttttctttacataagaaaataa |
315 |
Q |
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||||||| |||||||||||||| ||||| |||||||||| |||||||||| |
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| T |
17149133 |
catcactgttggtaaagatgaatgcaaacttttctttactcaagaaaataa |
17149183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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