View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0618_low_23 (Length: 276)
Name: NF0618_low_23
Description: NF0618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0618_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 30 - 264
Target Start/End: Original strand, 27422485 - 27422719
Alignment:
| Q |
30 |
ggattgatgaaagaaacctgatgttttctgctatagctaatccaatggttgacatccattagacatctcatatgcttcttctaattgatgttgtagctaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
27422485 |
ggattgatgaaagaaacctgatgttttctgctatagctaatccaatggttgacatccattagacatctcatatgtttcttctaattgatgttatagctaa |
27422584 |
T |
|
| Q |
130 |
tatacatctaccaactaaatacatctcagatttttgtgcaacttgttaggcttgtgttggaacagtgtgaggaggagagaagagaaccgatattgaacac |
229 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27422585 |
tatacatctaccagctaaatacatctcagatttgtgtgcaacttgttaggcttgtgttggaacagtgtgaggaggagagaagagaaccgatattgaacac |
27422684 |
T |
|
| Q |
230 |
aagaacatgagccactatgaaccacattttatatt |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
27422685 |
aagaacatgagccactatgaaccacattttatatt |
27422719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 150 - 264
Target Start/End: Original strand, 27412058 - 27412172
Alignment:
| Q |
150 |
acatctcagatttttgtgcaacttgttaggcttgtgttggaacagtgtgaggaggagagaagagaaccgatattgaacacaagaacatgagccactatga |
249 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||| |||||| |||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
27412058 |
acatcttagatttatgtgcaacttgttaggcttgtgatggaacggtgtgaggaggaaagaagcgaaccgatattgaacacaagaacttgagctactatga |
27412157 |
T |
|
| Q |
250 |
accacattttatatt |
264 |
Q |
| |
|
|||| ||||| |||| |
|
|
| T |
27412158 |
accaaattttttatt |
27412172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 173
Target Start/End: Original strand, 27419691 - 27419803
Alignment:
| Q |
61 |
tatagctaatccaatggttgacatccattagacatctcatatgcttcttctaattgatgttgtagctaatatacatctaccaactaaatacatctcagat |
160 |
Q |
| |
|
||||| ||||||||| || ||||| | |||||||||||| ||| ||||||||||||| ||| ||| |||||||||||||||||| |||| || ||| || |
|
|
| T |
27419691 |
tatagataatccaattgtagacatgctttagacatctcacatgtttcttctaattgacattgcagcaaatatacatctaccaactgaatatatatcatat |
27419790 |
T |
|
| Q |
161 |
ttttgtgcaactt |
173 |
Q |
| |
|
|| |||| ||||| |
|
|
| T |
27419791 |
ttatgtgaaactt |
27419803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 27415010 - 27415083
Alignment:
| Q |
190 |
aacagtgtgaggaggagagaagagaaccgatattgaacacaagaacatgagccactatgaaccacattttatatt |
264 |
Q |
| |
|
|||||||||||||||| | ||||||||| || |||||||||||| |||| ||| ||||||||||||||||||||| |
|
|
| T |
27415010 |
aacagtgtgaggaggaaa-aagagaaccaattttgaacacaagatcatgggcctctatgaaccacattttatatt |
27415083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 27566815 - 27566735
Alignment:
| Q |
37 |
tgaaagaaacctgatgttttctgctatagctaatccaatggttgacatccattagacatctcatatgcttcttctaattga |
117 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||| ||||| | ||||||||||| |||| ||||| ||||||| |
|
|
| T |
27566815 |
tgaaagaaacctggaatttgttgctatagctaatccaatggtagacatgctttagacatctcgtatgtttcttgtaattga |
27566735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 27570856 - 27570794
Alignment:
| Q |
124 |
agctaatatacatctaccaactaaatacatctcagatttttgtgcaacttgttaggcttgtgt |
186 |
Q |
| |
|
||||||||||||||||||| | |||| || |||||||| |||||||||||| | |||||||| |
|
|
| T |
27570856 |
agctaatatacatctaccatttgaatatatatcagatttatgtgcaacttgtaaagcttgtgt |
27570794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 27414844 - 27414889
Alignment:
| Q |
30 |
ggattgatgaaagaaacctgatgttttctgctatagctaatccaat |
75 |
Q |
| |
|
|||||| |||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
27414844 |
ggattggtgaaagaaacttgatgtttgttgctatagctaatccaat |
27414889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 263
Target Start/End: Complemental strand, 27566638 - 27566577
Alignment:
| Q |
202 |
aggagagaagagaaccgatattgaacacaagaacatgagccactatgaaccacattttatat |
263 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||| || | ||||||| ||||||||||||||| |
|
|
| T |
27566638 |
aggaaagaagagaaccaatatagaacacaagatcacaaaccactataaaccacattttatat |
27566577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2313 times since January 2019
Visitors: 3818