View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0618_low_3 (Length: 581)
Name: NF0618_low_3
Description: NF0618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0618_low_3 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 126 - 534
Target Start/End: Complemental strand, 41309072 - 41308664
Alignment:
| Q |
126 |
tcagaggcctaattgtatagatctaatgcaccatggatgaatttttatgtggtttgaatgttgtaggagaagatgtcaaaggaagaacctgagatgaact |
225 |
Q |
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| T |
41309072 |
tcagacgcctaattgtatagatctaatgcaccatggatgaattttcatgtggtttgaatgttgtaggagaagatgtcaaaggaagaacctgagatgaact |
41308973 |
T |
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| Q |
226 |
tgtagttgtagcctttgttacattaagtgaatttttaacctcaaattctgaaacagaaccatgattttcctctagtgcttttcttctagattcctccatc |
325 |
Q |
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| T |
41308972 |
tgtagttgtagcctttgttacattaagtgaatttttaacctcaaattctgaaacagaaccatgattttcctctagtgcttttcttttagattcctccatc |
41308873 |
T |
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| Q |
326 |
aatcttctatacaatttctcctctgcatcccttagaaacttgaactttggtggtggagaagatctaaacctgttgaattcagattctgctgagacttcaa |
425 |
Q |
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| T |
41308872 |
aatcttctatacaatttctcctctgcatcccttagaaacttgaactttggtggtggagaagatctaaacctgttgaattcagattctgctgagacttcaa |
41308773 |
T |
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| Q |
426 |
atagaggattgaacccttgatgcttataagattcaagagggtctaaagaacacttcataggagaatcaataaaatcacttaaactctttgttctagaccc |
525 |
Q |
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| T |
41308772 |
agagaggattgaacccttgatgcttataagattcaagagggtctaaagaacacttcataggagaatcaataaaatcacttaaactctttgttctagaccc |
41308673 |
T |
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| Q |
526 |
ttctctgct |
534 |
Q |
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| T |
41308672 |
ttttctgct |
41308664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 534 - 581
Target Start/End: Original strand, 110123 - 110170
Alignment:
| Q |
534 |
tcctcctcatataactaaattcggtcttatgttgctagttctccgtat |
581 |
Q |
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| T |
110123 |
tcctcctcatataacgaaattcggtcttatgttgctagttctccgtat |
110170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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