View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0618_low_4 (Length: 576)
Name: NF0618_low_4
Description: NF0618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0618_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 15 - 404
Target Start/End: Complemental strand, 43455532 - 43455142
Alignment:
| Q |
15 |
tatcatggtcactttttaaatcaaacatgaaacatcttttgtcctgtcaaatgccttgttattttgcaaatcaaagggatcccaagcctgcacaaacact |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43455532 |
tatcatggtcactttttaaatcaaacatgaaacatcttttgtcctgtcaaatgccttgttaatttgcaaatcaaagggatcccaagcctgcacaaacact |
43455433 |
T |
|
| Q |
115 |
tactaaaaaa-taaaagttgtaacgaactttcaatgattgtaagccttttaatcaaaatttggtacatgttgtttattattatgttgacatgtatagtgg |
213 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43455432 |
tactaaaaaaataaaagttgtaacgaactttcaatgattgtaagccttttaatcaaaatttggtacatgttgtttattattatgttgacatgtatagtgg |
43455333 |
T |
|
| Q |
214 |
ttccatatatgcaggttatttgtgaaataccatatgtttttggtcaaactatatttttctcagtcatagtgtatcctatggtgagctttgaatggaaagt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43455332 |
ttccatatatgcaggttatttgtgaaataccatatgtttttggtcaaactatatttttctcagtcatagtgtatcctatggtgagctttgaatggaaagt |
43455233 |
T |
|
| Q |
314 |
ggcgaaggtgtgttggttcttctttgtgagcttcttctctttcttgtacttcacatattatgggatgatgacggtttccattacaccaaac |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43455232 |
ggcgaaggtgtgttggttcttctttgtgagcttcttctctttcttgtacttcacatattatgggatgatgacggtttccattacaccaaac |
43455142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 272 - 404
Target Start/End: Original strand, 4503229 - 4503361
Alignment:
| Q |
272 |
ctcagtcatagtgtatcctatggtgagctttgaatggaaagtggcgaaggtgtgttggttcttctttgtgagcttcttctctttcttgtacttcacatat |
371 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||||||||||| | | ||| | | ||||||| |||| || ||||||||||| |||||||||||||| || |
|
|
| T |
4503229 |
ctcactcatagtgtatgctatggtgagttttgaatggaagttagaaaagttcttttggttcgtcttcgtcagcttcttctccttcttgtacttcacttac |
4503328 |
T |
|
| Q |
372 |
tatgggatgatgacggtttccattacaccaaac |
404 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||| |
|
|
| T |
4503329 |
tatggaatgatgactgtttccatcacaccaaac |
4503361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2034 times since January 2019
Visitors: 3811