View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0618_low_5 (Length: 559)
Name: NF0618_low_5
Description: NF0618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0618_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 269 - 545
Target Start/End: Complemental strand, 35995512 - 35995239
Alignment:
| Q |
269 |
agtcaattttttatttaaatagtataatttaaaaatacacatttctgtcaaaaaggatgagtatagaagaccacaagttccatacaagtatttggcacca |
368 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35995512 |
agtcaattttttatttaaatagtatagtttaaaagtacacatttctgtcaaaaaggatgagtatagaagaccacaagttccatacaagtatttggcacca |
35995413 |
T |
|
| Q |
369 |
tattataatataaatcattgaaataacttaatgctgcaaggtacaaaattgcacattgcctaatatttttcaaagnnnnnnnnnnnctcttttttagaaa |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
35995412 |
tattataatataaatcattgaaataacttaatgctgcaaggtac-aaattgcacattgcctaatatttttcaaag--aaaaaaatactcctttttagaaa |
35995316 |
T |
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| Q |
469 |
atcgtttccaatagctttgttttgatggatttggtttatgccctcacctttgttttcttttttcttattgaataata |
545 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35995315 |
atcgttcccgatagctttgttttgatggatttggtttatgccctcacctttgttttcttttttcttattgaataata |
35995239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 129 - 269
Target Start/End: Complemental strand, 35995689 - 35995549
Alignment:
| Q |
129 |
gaggggacctccatcttaagctcttgtcaaggatttcaacaaaaatataatcttgtcaaagnnnnnnnnntgctgaagnnnnnnnnnnnnnnnnnccggg |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
35995689 |
gaggggacctccatcttaagctcttgtcaaggatttcaacaaaaatataatcttgtcaaagaaaaacaaatgctgaagttttcttttttctttttccggg |
35995590 |
T |
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| Q |
229 |
gttttaccaaattcaatactctaattgtaggatagtgatta |
269 |
Q |
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| T |
35995589 |
gttttaccaaattcaatactctaattgtaggatagtgatta |
35995549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 35995764 - 35995716
Alignment:
| Q |
65 |
attttgacgcttaatcataataattgtcggtgatgattcctccatcttt |
113 |
Q |
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| T |
35995764 |
attttgacgcttaatcataataattgtcggtgatgattcctccatcttt |
35995716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 19308671 - 19308735
Alignment:
| Q |
3 |
aaaagtaggtatgggtagtaaagagattttgatagtcatttgtttttatatattgttagtggatt |
67 |
Q |
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|||| |||| |||||||||||||| ||| || |||| |||| ||| |||||||||||||||||| |
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| T |
19308671 |
aaaattagggatgggtagtaaagaaattatggtagtactttgctttcatatattgttagtggatt |
19308735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 530
Target Start/End: Complemental strand, 5954244 - 5954194
Alignment:
| Q |
480 |
tagctttgttttgatggatttggtttatgccctcacctttgttttcttttt |
530 |
Q |
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|||| |||||||| ||| |||||||||||||| |||| ||||||||||||| |
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| T |
5954244 |
tagccttgttttggtgggtttggtttatgcccccacccttgttttcttttt |
5954194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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