View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0618_low_7 (Length: 437)

Name: NF0618_low_7
Description: NF0618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0618_low_7
NF0618_low_7
[»] chr4 (59 HSPs)
chr4 (182-359)||(11417686-11417862)
chr4 (194-359)||(29651217-29651381)
chr4 (194-358)||(10424123-10424286)
chr4 (182-354)||(38143610-38143781)
chr4 (182-358)||(38694824-38695002)
chr4 (194-359)||(31836344-31836509)
chr4 (194-359)||(21166260-21166424)
chr4 (194-353)||(26610350-26610509)
chr4 (194-358)||(45235845-45236008)
chr4 (198-359)||(26611172-26611332)
chr4 (197-358)||(36865605-36865765)
chr4 (194-358)||(21165447-21165610)
chr4 (194-358)||(45230365-45230528)
chr4 (194-359)||(10424944-10425108)
chr4 (246-358)||(11417873-11417985)
chr4 (197-357)||(29650416-29650575)
chr4 (194-359)||(39522374-39522538)
chr4 (194-358)||(31835148-31835311)
chr4 (182-360)||(9939123-9939297)
chr4 (194-357)||(36864818-36864978)
chr4 (246-359)||(9939307-9939420)
chr4 (246-358)||(38694702-38694814)
chr4 (246-340)||(38143506-38143600)
chr4 (260-358)||(39523221-39523319)
chr4 (260-344)||(25970120-25970203)
chr4 (309-359)||(47377597-47377647)
chr4 (247-344)||(36450742-36450839)
chr4 (260-320)||(11806129-11806189)
chr4 (278-358)||(47376852-47376932)
chr4 (247-360)||(25970740-25970853)
chr4 (310-359)||(47198604-47198653)
chr4 (310-353)||(3847891-3847934)
chr4 (310-353)||(3848578-3848621)
chr4 (309-358)||(30808621-30808670)
chr4 (309-358)||(37275088-37275137)
chr4 (310-359)||(42544487-42544536)
chr4 (310-358)||(25371545-25371593)
chr4 (309-360)||(23425206-23425257)
chr4 (309-360)||(28684231-28684282)
chr4 (285-344)||(36451402-36451461)
chr4 (324-358)||(10424385-10424419)
chr4 (309-351)||(11680283-11680325)
chr4 (309-351)||(11688562-11688604)
chr4 (324-358)||(21166137-21166171)
chr4 (311-353)||(25370511-25370553)
chr4 (324-358)||(29650655-29650689)
chr4 (310-360)||(30478307-30478357)
chr4 (324-358)||(31836221-31836255)
chr4 (324-358)||(45235733-45235767)
chr4 (310-360)||(47199395-47199445)
chr4 (306-344)||(52077116-52077154)
chr4 (310-352)||(55159186-55159228)
chr4 (310-359)||(48013316-48013365)
chr4 (310-359)||(52757812-52757861)
chr4 (310-359)||(55160067-55160115)
chr4 (309-365)||(1014005-1014061)
chr4 (309-341)||(23383327-23383359)
chr4 (314-358)||(23865321-23865365)
chr4 (311-359)||(46765169-46765217)
[»] chr8 (26 HSPs)
chr8 (182-359)||(34992137-34992313)
chr8 (194-358)||(32536708-32536871)
chr8 (194-359)||(41859309-41859473)
chr8 (194-351)||(37639718-37639874)
chr8 (194-358)||(38023624-38023787)
chr8 (194-359)||(41859981-41860145)
chr8 (246-358)||(34992015-34992127)
chr8 (246-359)||(5034897-5035010)
chr8 (194-361)||(32537373-32537536)
chr8 (260-358)||(5035226-5035324)
chr8 (194-282)||(38024416-38024502)
chr8 (194-237)||(37640482-37640525)
chr8 (310-360)||(61452-61502)
chr8 (310-359)||(25876520-25876569)
chr8 (310-358)||(1365829-1365877)
chr8 (286-350)||(37640538-37640601)
chr8 (321-359)||(44098432-44098470)
chr8 (309-358)||(27918046-27918095)
chr8 (310-358)||(39254787-39254835)
chr8 (266-358)||(43924490-43924582)
chr8 (310-360)||(39255752-39255802)
chr8 (310-363)||(62240-62293)
chr8 (309-358)||(41092172-41092221)
chr8 (266-351)||(43924974-43925059)
chr8 (310-359)||(44751607-44751656)
chr8 (310-358)||(42345166-42345214)
[»] chr7 (34 HSPs)
chr7 (182-358)||(17145622-17145798)
chr7 (194-359)||(38071897-38072061)
chr7 (194-358)||(668179-668342)
chr7 (194-359)||(37864192-37864356)
chr7 (200-359)||(4261487-4261645)
chr7 (194-358)||(668988-669151)
chr7 (246-360)||(38778852-38778966)
chr7 (201-354)||(7677421-7677573)
chr7 (246-358)||(38779500-38779611)
chr7 (246-358)||(17145808-17145920)
chr7 (246-358)||(38072227-38072339)
chr7 (281-358)||(37468976-37469053)
chr7 (246-354)||(4261209-4261317)
chr7 (260-356)||(7677759-7677855)
chr7 (262-360)||(41194511-41194608)
chr7 (301-359)||(37468909-37468967)
chr7 (260-358)||(24322301-24322399)
chr7 (309-364)||(29006341-29006396)
chr7 (310-351)||(20890206-20890247)
chr7 (311-360)||(45887981-45888030)
chr7 (311-359)||(44909360-44909408)
chr7 (311-359)||(47331954-47332002)
chr7 (309-359)||(29007198-29007248)
chr7 (309-359)||(41224842-41224892)
chr7 (324-357)||(668420-668453)
chr7 (311-360)||(4985395-4985444)
chr7 (311-360)||(4989493-4989542)
chr7 (260-297)||(24321487-24321524)
chr7 (309-358)||(27599211-27599260)
chr7 (309-358)||(27600094-27600143)
chr7 (279-344)||(42607095-42607160)
chr7 (275-319)||(33323871-33323915)
chr7 (312-344)||(40319620-40319652)
chr7 (311-351)||(45887286-45887326)
[»] chr6 (24 HSPs)
chr6 (194-356)||(33479698-33479860)
chr6 (182-356)||(3542816-3542989)
chr6 (184-358)||(33018167-33018340)
chr6 (194-358)||(15083203-15083366)
chr6 (194-358)||(33480513-33480676)
chr6 (194-358)||(22579935-22580098)
chr6 (194-354)||(22587195-22587354)
chr6 (246-358)||(3542999-3543111)
chr6 (194-353)||(15082402-15082560)
chr6 (246-351)||(33018352-33018457)
chr6 (182-359)||(7193337-7193504)
chr6 (263-354)||(22582432-22582523)
chr6 (246-360)||(7193514-7193628)
chr6 (278-358)||(24126686-24126766)
chr6 (309-358)||(24125972-24126021)
chr6 (310-358)||(7531829-7531877)
chr6 (310-360)||(7159341-7159391)
chr6 (324-358)||(15082638-15082672)
chr6 (324-358)||(22580597-22580631)
chr6 (324-358)||(22587083-22587117)
chr6 (324-358)||(33479938-33479972)
chr6 (310-359)||(7532440-7532489)
chr6 (310-359)||(14337557-14337606)
chr6 (310-358)||(9574571-9574619)
[»] chr3 (41 HSPs)
chr3 (194-362)||(36750323-36750489)
chr3 (184-359)||(32490070-32490244)
chr3 (182-358)||(19132685-19132860)
chr3 (194-358)||(38923550-38923713)
chr3 (194-358)||(45242872-45243035)
chr3 (194-357)||(38922744-38922906)
chr3 (194-357)||(45242067-45242229)
chr3 (194-360)||(41755497-41755662)
chr3 (194-360)||(3997926-3998091)
chr3 (194-356)||(3970994-3971155)
chr3 (198-360)||(3971791-3971952)
chr3 (194-360)||(44686253-44686417)
chr3 (194-359)||(41756317-41756481)
chr3 (7-189)||(47676400-47676606)
chr3 (194-358)||(52491891-52492049)
chr3 (194-356)||(3998726-3998887)
chr3 (246-358)||(19132563-19132675)
chr3 (252-358)||(32489946-32490052)
chr3 (204-359)||(44687058-44687212)
chr3 (246-353)||(36750050-36750157)
chr3 (246-359)||(52492215-52492328)
chr3 (359-434)||(47671868-47671943)
chr3 (311-358)||(31556217-31556264)
chr3 (309-360)||(49756273-49756324)
chr3 (36-150)||(47676617-47676732)
chr3 (309-359)||(14667296-14667345)
chr3 (312-358)||(17226968-17227014)
chr3 (309-359)||(37105076-37105126)
chr3 (246-324)||(45500507-45500584)
chr3 (101-150)||(47675224-47675273)
chr3 (309-358)||(49757181-49757230)
chr3 (309-357)||(42145277-42145325)
chr3 (311-358)||(31556188-31556235)
chr3 (310-361)||(43638078-43638129)
chr3 (324-358)||(38923438-38923472)
chr3 (316-358)||(42144369-42144411)
chr3 (324-358)||(45242307-45242341)
chr3 (317-358)||(17227955-17227996)
chr3 (310-359)||(25329382-25329431)
chr3 (266-351)||(38337433-38337518)
chr3 (310-358)||(39901846-39901894)
[»] chr2 (20 HSPs)
chr2 (182-359)||(38834386-38834562)
chr2 (194-358)||(21471839-21472002)
chr2 (194-360)||(21471015-21471180)
chr2 (194-359)||(37547997-37548163)
chr2 (246-359)||(38834572-38834685)
chr2 (246-358)||(13134318-13134430)
chr2 (246-358)||(14573261-14573372)
chr2 (247-360)||(14573936-14574049)
chr2 (260-358)||(4479652-4479750)
chr2 (310-358)||(33433160-33433208)
chr2 (322-359)||(1164788-1164825)
chr2 (310-359)||(5276464-5276513)
chr2 (310-360)||(4478849-4478899)
chr2 (309-359)||(30545434-30545484)
chr2 (309-358)||(16426553-16426602)
chr2 (310-359)||(19521917-19521966)
chr2 (309-358)||(40992222-40992271)
chr2 (306-358)||(30544727-30544779)
chr2 (311-359)||(41984726-41984774)
chr2 (312-360)||(45139690-45139738)
[»] scaffold0311 (1 HSPs)
scaffold0311 (194-359)||(44-209)
[»] chr1 (38 HSPs)
chr1 (194-358)||(16270207-16270371)
chr1 (182-358)||(43737729-43737904)
chr1 (194-360)||(51974435-51974600)
chr1 (194-358)||(51975112-51975275)
chr1 (184-358)||(23440617-23440789)
chr1 (194-360)||(48972330-48972495)
chr1 (197-358)||(16271036-16271196)
chr1 (197-358)||(9947995-9948155)
chr1 (246-358)||(23440801-23440913)
chr1 (194-363)||(38931131-38931300)
chr1 (246-359)||(43737914-43738027)
chr1 (246-358)||(9948823-9948935)
chr1 (194-358)||(48971705-48971868)
chr1 (194-358)||(38930312-38930475)
chr1 (246-358)||(50827027-50827138)
chr1 (194-344)||(6076753-6076901)
chr1 (260-358)||(193850-193948)
chr1 (264-328)||(27888701-27888765)
chr1 (260-344)||(6075988-6076072)
chr1 (195-334)||(31390713-31390847)
chr1 (309-359)||(1012546-1012596)
chr1 (246-340)||(47334217-47334310)
chr1 (260-358)||(47334850-47334948)
chr1 (310-359)||(51987826-51987875)
chr1 (309-360)||(1013471-1013522)
chr1 (310-359)||(35616775-35616824)
chr1 (310-358)||(8560839-8560887)
chr1 (279-323)||(40649536-40649580)
chr1 (310-358)||(51988464-51988512)
chr1 (324-358)||(16270901-16270935)
chr1 (324-358)||(38930574-38930608)
chr1 (310-359)||(45064685-45064734)
chr1 (312-357)||(49611562-49611607)
chr1 (310-358)||(194701-194749)
chr1 (311-351)||(14924681-14924721)
chr1 (311-351)||(14925343-14925383)
chr1 (310-358)||(37874064-37874112)
chr1 (310-358)||(49610706-49610754)
[»] chr5 (28 HSPs)
chr5 (194-358)||(15183902-15184065)
chr5 (194-358)||(15183088-15183252)
chr5 (198-359)||(33002705-33002865)
chr5 (194-358)||(686417-686579)
chr5 (210-361)||(8204117-8204267)
chr5 (182-359)||(8040194-8040370)
chr5 (194-357)||(687233-687395)
chr5 (246-359)||(12190094-12190207)
chr5 (246-359)||(8040380-8040493)
chr5 (246-360)||(36626566-36626680)
chr5 (260-359)||(33001931-33002030)
chr5 (311-358)||(39950404-39950451)
chr5 (260-359)||(33283973-33284072)
chr5 (182-237)||(36626501-36626556)
chr5 (309-358)||(4608589-4608638)
chr5 (310-359)||(13654932-13654981)
chr5 (322-358)||(39950444-39950480)
chr5 (311-358)||(2319266-2319313)
chr5 (309-352)||(4607470-4607513)
chr5 (324-358)||(686667-686701)
chr5 (266-352)||(17767547-17767633)
chr5 (311-360)||(2319968-2320017)
chr5 (312-353)||(39167442-39167483)
chr5 (308-360)||(13404701-13404753)
chr5 (310-358)||(16971033-16971081)
chr5 (311-359)||(26268343-26268391)
chr5 (310-358)||(26688166-26688214)
chr5 (310-358)||(26957897-26957945)
[»] scaffold0041 (3 HSPs)
scaffold0041 (260-358)||(27221-27319)
scaffold0041 (269-358)||(27534-27623)
scaffold0041 (194-234)||(27498-27538)
[»] scaffold0332 (1 HSPs)
scaffold0332 (246-358)||(9194-9306)
[»] scaffold0155 (1 HSPs)
scaffold0155 (309-358)||(17339-17388)


Alignment Details
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 59)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 182 - 359
Target Start/End: Complemental strand, 11417862 - 11417686
Alignment:
Q  182 attatctttcacatgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgt 281  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||    
T  11417862 attatctttcacatgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaata-taatctagtggttgagagagtatgataggaatatgt 11417764  T
Q  282 tcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11417763 tcctcatttaatctaatggacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 11417686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 194 - 359
Target Start/End: Original strand, 29651217 - 29651381
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  29651217 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgttcctcatttaat 29651315  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29651316 ctaatagatatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 29651381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 194 - 358
Target Start/End: Complemental strand, 10424286 - 10424123
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10424286 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgatagaaatatgttcctcatttaat 10424188  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  10424187 ctaatggacatgatcaactttcctatggtgggaaagaactctcctttcccaaattaaatggcacc 10424123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 182 - 354
Target Start/End: Original strand, 38143610 - 38143781
Alignment:
Q  182 attatctttcacatgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgt 281  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||    
T  38143610 attatctttcacatgggtgtgtgaggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgt 38143708  T
Q  282 tcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatgg 354  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||    
T  38143709 tcctcatttaatctaatggacatgaccaactttcccatggtgggaaagaactctcatttcccaaattaaatgg 38143781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 182 - 358
Target Start/End: Original strand, 38694824 - 38695002
Alignment:
Q  182 attatctttcacatgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnn--taatctagtggttaagagagtatgatagaaatat 279  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||           ||||||||||||| |||||||||||||  |||||    
T  38694824 attatctttcacatgggtgtgtggggacatgaaagagagagtgtgaaagatagtagtataaaaaaataatctagtggttgagagagtatgatatgaatat 38694923  T
Q  280 gttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
     ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  38694924 tttcctcatttaatctaatagacatgatcaactttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 38695002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 194 - 359
Target Start/End: Original strand, 31836344 - 31836509
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    |||||||||||||| ||| |||||||| |||||||||||| |||        ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31836344 atgggtgtgtgggggcataaaagagagagtgtgaaagataatataaaaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaat 31836443  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  31836444 ctaatggacatgatcaactttcccatggtgggaaagaactctcctttctcaaattaaatggcacct 31836509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 194 - 359
Target Start/End: Original strand, 21166260 - 21166424
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  21166260 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgttcctcatttaat 21166358  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||| ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||    
T  21166359 ctaatggacatgatcaactttcccatgatgggaaagaactctcctttctcaaattaaatggcacct 21166424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 194 - 353
Target Start/End: Complemental strand, 26610509 - 26610350
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  26610509 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaat 26610410  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatg 353  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||    
T  26610409 ctaatggacatgatcaattttcccatggtgggaaagaactctcatttcccaaattaaatg 26610350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 194 - 358
Target Start/End: Original strand, 45235845 - 45236008
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  45235845 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagaatatgatagaaatatgttcctcatttaat 45235943  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  45235944 ctaatggacatgattaactttcccatggtgggaaagaactctccttttccaaattaaatggcacc 45236008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 198 - 359
Target Start/End: Original strand, 26611172 - 26611332
Alignment:
Q  198 gtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaa 297  Q
    ||||||||||||||||||||||| |||| |||||||||||        ||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  26611172 gtgtgtggggacatgaaagagagagtgtaaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgttcctcatttaatctaa 26611270  T
Q  298 tagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    | ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  26611271 tggacatgatcaactttcccatggtgggaaaaaactctcctttcccaaattaaatgacacct 26611332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 197 - 358
Target Start/End: Original strand, 36865605 - 36865765
Alignment:
Q  197 ggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaatcta 296  Q
    |||||||||||||||||||||||| |||| |||||||||||        ||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  36865605 ggtgtgtggggacatgaaagagagagtgtaaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgttcctcatttaatcta 36865703  T
Q  297 atagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    || || |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  36865704 atggatatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatgtcacc 36865765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 194 - 358
Target Start/End: Complemental strand, 21165610 - 21165447
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    |||||||||||||||||||||||||||  |||||||||||||||        ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21165610 atgggtgtgtggggacatgaaagagagactgtgaaagatagtataaaaaat-taatctagtggttgagagagtatgatagaaatatgttcctcatttaat 21165512  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    | ||| |||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||||    
T  21165511 caaatggacatgatcaactttctcatggtgggaaagaactattctttcccaaattaaatggcacc 21165447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 194 - 358
Target Start/End: Complemental strand, 45230528 - 45230365
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  45230528 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgttcctcatttaat 45230430  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||  | |||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||    
T  45230429 ctaatgaatatgatcaactttcccatggtgggaaagaactctcttttcccgaattaaatggcacc 45230365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 194 - 359
Target Start/End: Original strand, 10424944 - 10425108
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||| ||||||||||||||||| |||||||||||| |||        ||||||||||||| |||||||||||||| ||||| |||||||||||||    
T  10424944 atgggtgtgaggggacatgaaagagagagtgtgaaagataatataaaaaaa-taatctagtggttgagagagtatgataggaatatattcctcatttaat 10425042  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  10425043 ctaatggatatgatcaactttcccatggtgggaaagaactctcctttcctaaattaaatggcacct 10425108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 246 - 358
Target Start/End: Original strand, 11417873 - 11417985
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  11417873 taatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatggtgggaaagaactctcctttcccaa 11417972  T
Q  346 attaaatggcacc 358  Q
    |||||||| ||||    
T  11417973 attaaatgacacc 11417985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 197 - 357
Target Start/End: Complemental strand, 29650575 - 29650416
Alignment:
Q  197 ggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaatcta 296  Q
    ||||||||||||||||||| |||| ||||||||||||||||        ||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  29650575 ggtgtgtggggacatgaaaaagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgttcctcatttaatcta 29650477  T
Q  297 atagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcac 357  Q
    || ||||||||||||||||||| | ||| ||| ||||||| ||||||||||||||||||||    
T  29650476 atggacatgatcaactttcccaagatggaaaagaactctcatttcccaaattaaatggcac 29650416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 194 - 359
Target Start/End: Complemental strand, 39522538 - 39522374
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||| | ||| ||||||||||||        ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  39522538 atgggtgtgtggggacatgaaagagggagtgcgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgttcctcatttaat 39522440  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||| || |||||||||||||||||||||  ||| |||| ||||||||||||||||||| |||||    
T  39522439 ctaatggatatgatcaactttcccatggtgaaaaagaactatcctttcccaaattaaatgacacct 39522374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 194 - 358
Target Start/End: Complemental strand, 31835311 - 31835148
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||||||| ||||||    
T  31835311 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaga-taatctagtggttgagagagtatgataggaatatgttcctcgtttaat 31835213  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| ||||| ||||||||||| ||||||||||| |||| | ||||  ||||||||||||||||    
T  31835212 ctaatggacataatcaactttcctatggtgggaaagaactatactttttcaaattaaatggcacc 31835148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 182 - 360
Target Start/End: Complemental strand, 9939297 - 9939123
Alignment:
Q  182 attatctttcacatgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgt 281  Q
    ||||||||||||||||||||||||||| |||||||||||  |||||||||||||||        ||||||||||||| |||||||||||||  |||||||    
T  9939297 attatctttcacatgggtgtgtggggatatgaaagagagaatgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataagaatatgt 9939199  T
Q  282 tcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    | ||||||||||||||| |||||||||||||||||||| |    ||| |||||| ||||||||||||||||| ||||||    
T  9939198 ttctcatttaatctaatggacatgatcaactttcccataga---aaagaactctactttcccaaattaaatgacaccta 9939123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 194 - 357
Target Start/End: Complemental strand, 36864978 - 36864818
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||| |||||||||||||||||||||  | |||||||||||||        ||||||||||||| |||||||||||||| |||||||| ||||||||||    
T  36864978 atgggagtgtggggacatgaaagagag--tatgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgtttctcatttaat 36864882  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcac 357  Q
    ||||| |||||||||||||||| ||||||| |||| ||||||||||||||||||||||| ||||    
T  36864881 ctaatggacatgatcaactttctcatggtgagaaagaactctcctttcccaaattaaatagcac 36864818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 246 - 359
Target Start/End: Original strand, 9939307 - 9939420
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    |||| |||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||| |||    
T  9939307 taatatagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaacttttccatggtgggaaagaactcccctttctcaa 9939406  T
Q  346 attaaatggcacct 359  Q
    ||||||||||||||    
T  9939407 attaaatggcacct 9939420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 246 - 358
Target Start/End: Complemental strand, 38694814 - 38694702
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||  | |||||||||||| ||||| ||||||| ||||||||||| ||||    
T  38694814 taatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatgaatatgatcaacttttccatgctgggaaagaactctccttttccaa 38694715  T
Q  346 attaaatggcacc 358  Q
    |||||||||||||    
T  38694714 attaaatggcacc 38694702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 246 - 340
Target Start/End: Complemental strand, 38143600 - 38143506
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctccttt 340  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |||||||||||    
T  38143600 taatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcctatggtggaaaagaactctccttt 38143506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 260 - 358
Target Start/End: Original strand, 39523221 - 39523319
Alignment:
Q  260 agagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||||||| || | || | |||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  39523221 agagagtatggtaaagatgtattcctcatttaatctaatggacatgatcaactttcccatggtggaaaagaactctcctttcccaaattaaatggcacc 39523319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 260 - 344
Target Start/End: Complemental strand, 25970203 - 25970120
Alignment:
Q  260 agagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttccca 344  Q
    ||||||||||||| | || |||| ||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||    
T  25970203 agagagtatgataaagatttgtttctcatttaatctaatggacat-atcaactttcccatggtgggaaacaactcccctttccca 25970120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 359
Target Start/End: Original strand, 47377597 - 47377647
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  47377597 aactttcccatggtgggaaacaactcccctttcccaaattaaatggcacct 47377647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 344
Target Start/End: Complemental strand, 36450839 - 36450742
Alignment:
Q  247 aatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttccca 344  Q
    |||||||||  | |||||||| |||| | || |||| ||||||||||| ||| ||||| ||||||||||||||||||| ||| ||||| |||||||||    
T  36450839 aatctagtgtatgagagagtaggataaagatttgttactcatttaatccaatggacataatcaactttcccatggtggaaaacaactcccctttccca 36450742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 11806189 - 11806129
Alignment:
Q  260 agagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatg 320  Q
    |||||||| |||| |||| |||||||||||||||||||| |||||||| ||||||||||||    
T  11806189 agagagtaggataaaaatgtgttcctcatttaatctaatggacatgattaactttcccatg 11806129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 358
Target Start/End: Complemental strand, 47376932 - 47376852
Alignment:
Q  278 atgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||| |||||||||| || ||  | |||||||||||||||| ||||||| ||||| |||||||||||||||||| ||||    
T  47376932 atgttcttcatttaatccaaaagttaagatcaactttcccatgatgggaaacaactcccctttcccaaattaaatgccacc 47376852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 247 - 360
Target Start/End: Original strand, 25970740 - 25970853
Alignment:
Q  247 aatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaa 346  Q
    |||||||||  | |||||||| |||| | || |||| ||||||||||  ||| ||||| |||||||||| |||||||||||| ||||| | ||||||| |    
T  25970740 aatctagtgtatgagagagtaggataaagatttgttactcatttaattcaatggacataatcaactttctcatggtgggaaacaactcccttttcccata 25970839  T
Q  347 ttaaatggcaccta 360  Q
     |||||| ||||||    
T  25970840 ctaaatgccaccta 25970853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 47198653 - 47198604
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||||||||||||||| || ||||||||||||||||||||| |||||    
T  47198653 actttcccatggtgggaaagaagtctcctttcccaaattaaatgtcacct 47198604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 353
Target Start/End: Complemental strand, 3847934 - 3847891
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatg 353  Q
    ||||||||||||||||||| || |||||||||||||||||||||    
T  3847934 actttcccatggtgggaaaaaagtctcctttcccaaattaaatg 3847891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 353
Target Start/End: Original strand, 3848578 - 3848621
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatg 353  Q
    ||||||||||||||||||| || |||||||||||||||||||||    
T  3848578 actttcccatggtgggaaagaagtctcctttcccaaattaaatg 3848621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 30808670 - 30808621
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||||||||||||||||| |||||||||||||||  ||||||| ||||    
T  30808670 aactttcccatggtgggaaacaactctcctttcccattttaaatgccacc 30808621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 37275137 - 37275088
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||| |||||||||||| || ||||||||||||||||||| ||||||    
T  37275137 aactttctcatggtgggaaagaagtctcctttcccaaattaaacggcacc 37275088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 42544536 - 42544487
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||| ||||||||||||| || ||| |||||||||||||||||||||||    
T  42544536 acttttccatggtgggaaaaaagtcttctttcccaaattaaatggcacct 42544487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 25371545 - 25371593
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||| |||||||||||| || ||||||||||||||||||||| ||||    
T  25371545 actttctcatggtgggaaagaagtctcctttcccaaattaaatgtcacc 25371593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 360
Target Start/End: Original strand, 23425206 - 23425257
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    |||||||||||||||||||| |||||||| |||||| | |||||| ||||||    
T  23425206 aactttcccatggtgggaaacaactctccattcccatactaaatgccaccta 23425257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 360
Target Start/End: Original strand, 28684231 - 28684282
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    |||||||| ||||| ||||| || ||||||||||||||||||||| ||||||    
T  28684231 aactttcctatggtaggaaaaaagtctcctttcccaaattaaatgtcaccta 28684282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 344
Target Start/End: Original strand, 36451402 - 36451461
Alignment:
Q  285 tcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttccca 344  Q
    |||||||||||||| ||||| ||||||||| |||||||| |||| |||||  ||||||||    
T  36451402 tcatttaatctaatggacataatcaacttttccatggtgagaaacaactcctctttccca 36451461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 358
Target Start/End: Original strand, 10424385 - 10424419
Alignment:
Q  324 ggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| |||||||||||||||||||||||||||||    
T  10424385 ggaaagaactctcctttcccaaattaaatggcacc 10424419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 11680325 - 11680283
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaa 351  Q
    |||||||||||||||||||| ||||  ||||||||||||||||    
T  11680325 aactttcccatggtgggaaaaaactaacctttcccaaattaaa 11680283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 11688604 - 11688562
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaa 351  Q
    |||||||||||||||||||| ||||  ||||||||||||||||    
T  11688604 aactttcccatggtgggaaaaaactaacctttcccaaattaaa 11688562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 358
Target Start/End: Complemental strand, 21166171 - 21166137
Alignment:
Q  324 ggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| |||||||||||||||||||||||||||||    
T  21166171 ggaaagaactctcctttcccaaattaaatggcacc 21166137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 353
Target Start/End: Complemental strand, 25370553 - 25370511
Alignment:
Q  311 ctttcccatggtgggaaataactctcctttcccaaattaaatg 353  Q
    |||||||||||||||||| ||||  ||||||||||||||||||    
T  25370553 ctttcccatggtgggaaaaaactagcctttcccaaattaaatg 25370511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 358
Target Start/End: Original strand, 29650655 - 29650689
Alignment:
Q  324 ggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| |||||||||||||||||||||||||||||    
T  29650655 ggaaagaactctcctttcccaaattaaatggcacc 29650689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 360
Target Start/End: Complemental strand, 30478357 - 30478307
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    ||||||||||| ||||||| || | | ||||||||||||||||||||||||    
T  30478357 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcaccta 30478307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 358
Target Start/End: Complemental strand, 31836255 - 31836221
Alignment:
Q  324 ggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| |||||||||||||||||||||||||||||    
T  31836255 ggaaagaactctcctttcccaaattaaatggcacc 31836221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 358
Target Start/End: Complemental strand, 45235767 - 45235733
Alignment:
Q  324 ggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| |||||||||||||||||||||||||||||    
T  45235767 ggaaagaactctcctttcccaaattaaatggcacc 45235733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 360
Target Start/End: Original strand, 47199395 - 47199445
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    ||||||| ||||||||||| || |||| |||||||||||||||| ||||||    
T  47199395 actttcctatggtgggaaagaagtctcttttcccaaattaaatgccaccta 47199445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 344
Target Start/End: Complemental strand, 52077154 - 52077116
Alignment:
Q  306 atcaactttcccatggtgggaaataactctcctttccca 344  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  52077154 atcaactttcccatcatgggaaataactctcctttccca 52077116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 352
Target Start/End: Complemental strand, 55159228 - 55159186
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaat 352  Q
    ||||||||||||| ||||| || ||||||||||||||||||||    
T  55159228 actttcccatggtaggaaagaagtctcctttcccaaattaaat 55159186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 48013365 - 48013316
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||||||| ||||||| || | | |||||||||||||||||||||||    
T  48013365 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacct 48013316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 52757861 - 52757812
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||| |||| |||||| || ||| |||||||||||||||||||||||    
T  52757861 actttcctatggagggaaaaaagtcttctttcccaaattaaatggcacct 52757812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 55160067 - 55160115
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    |||||||||||||| |||| || ||||||||||||||||||||| |||||    
T  55160067 actttcccatggtgagaaa-aagtctcctttcccaaattaaatgccacct 55160115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 365
Target Start/End: Original strand, 1014005 - 1014061
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcacctagtttc 365  Q
    |||||||||||||||||||| ||||   ||| ||||||||||||| |||||| ||||    
T  1014005 aactttcccatggtgggaaacaacttcacttacccaaattaaatgtcacctattttc 1014061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 23383359 - 23383327
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttc 341  Q
    |||||||||||||||||||| ||||||||||||    
T  23383359 aactttcccatggtgggaaacaactctcctttc 23383327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 23865321 - 23865365
Alignment:
Q  314 tcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||||||||||| || ||||||||| ||||||||| ||||||    
T  23865321 tcccatggtgggaaacaagtctcctttcacaaattaaacggcacc 23865365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 359
Target Start/End: Original strand, 46765169 - 46765217
Alignment:
Q  311 ctttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    |||||||||||||||||| ||||   ||||||||||||||||| |||||    
T  46765169 ctttcccatggtgggaaaaaactagtctttcccaaattaaatgccacct 46765217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 3e-64; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 182 - 359
Target Start/End: Original strand, 34992137 - 34992313
Alignment:
Q  182 attatctttcacatgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgt 281  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||        |||| |||||||| |||||||||||||| |||||||    
T  34992137 attatctttcacatgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatttagtggttgagagagtatgataggaatatgt 34992235  T
Q  282 tcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34992236 tcctcatttaatctaatggacatgatcaactttcccatggtgggaaaaaactctcctttcccaaattaaatggcacct 34992313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 194 - 358
Target Start/End: Complemental strand, 32536871 - 32536708
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||||| ||||||||    
T  32536871 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgttccccatttaat 32536773  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||    
T  32536772 ctaatggacatgatcaactttcccatggtgggaaagaactctcatttcctaaattaaatggcacc 32536708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 194 - 359
Target Start/End: Complemental strand, 41859473 - 41859309
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||  ||||||||| |||||||||    
T  41859473 atgggtgtgtggggatatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgatatgaatatgttcttcatttaat 41859375  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41859374 ctaacggacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 41859309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 194 - 351
Target Start/End: Complemental strand, 37639874 - 37639718
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| ||||||||| |||| |||||||||||||||||||    
T  37639874 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatcataggaatatgttcctcatttaat 37639776  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaa 351  Q
    |||||  | |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37639775 ctaatgaatatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaa 37639718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 194 - 358
Target Start/End: Complemental strand, 38023787 - 38023624
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38023787 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgatagaaatatgttcctcatttaat 38023689  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||  |||||||||||||| ||||| ||| ||| || ||||||||||||||||||||| ||||    
T  38023688 ctaatgaacatgatcaacttttccatgatggaaaagaattctcctttcccaaattaaatgacacc 38023624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 194 - 359
Target Start/End: Original strand, 41859981 - 41860145
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        |||| |||||||| ||| ||||||||||||||||||||||||||||||    
T  41859981 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatatagtggttgagaaagtatgatagaaatatgttcctcatttaat 41860079  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||| ||||||||||||||| |||| ||   |||||||||| |||||||||||||||||||||||    
T  41860080 ctaatggacatgatcaacttttccatagtaaaaaataactcttctttcccaaattaaatggcacct 41860145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 246 - 358
Target Start/End: Complemental strand, 34992127 - 34992015
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||||    
T  34992127 taatttagtggttgagagagtatgatagaaatatgttcctcatttaatctaatggacatgatcaacttttccatggtggaaaataactctcgtttcccaa 34992028  T
Q  346 attaaatggcacc 358  Q
    |||||||||||||    
T  34992027 attaaatggcacc 34992015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 246 - 359
Target Start/End: Complemental strand, 5035010 - 5034897
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    ||||||||||||| |||||||||||||  ||||||||||||||| |||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  5035010 taatctagtggttgagagagtatgatatgaatatgttcctcattcaatctaatggacatgatcaactttcccatggtggaaaagaactctcctttcccaa 5034911  T
Q  346 attaaatggcacct 359  Q
    ||||||||||||||    
T  5034910 attaaatggcacct 5034897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 194 - 361
Target Start/End: Original strand, 32537373 - 32537536
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||        ||||||||||||| |||||||||||||  ||||||||||| |||||||    
T  32537373 atgggtgtgtggggacatgaaagagagagtgcgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataagaatatgttccttatttaat 32537471  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacctag 361  Q
     |||| |||||||| ||||||| ||   ||| ||| ||||||| ||||||||||||||||| ||||||    
T  32537472 ataatggacatgattaactttctca---tggaaaagaactctcatttcccaaattaaatggtacctag 32537536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 260 - 358
Target Start/End: Original strand, 5035226 - 5035324
Alignment:
Q  260 agagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||||||||||  ||| | |||||||||||||||||| ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||    
T  5035226 agagagtatgataagaatgtattcctcatttaatctaatggacatgatcaactttcctatggtggaaaagaactctcctttcccaaattaaatggcacc 5035324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 38024416 - 38024502
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgtt 282  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||||||||||||    
T  38024416 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtat--aaaaaataatctagtggttgagagagtatgatagaaatatgtt 38024502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 37640482 - 37640525
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtat 237  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  37640482 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtat 37640525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 310 - 360
Target Start/End: Complemental strand, 61502 - 61452
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    ||||||||||||||||||| || ||||||||||||||||||||| ||||||    
T  61502 actttcccatggtgggaaagaagtctcctttcccaaattaaatgccaccta 61452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 25876569 - 25876520
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||||||||||||||| || ||| |||||||||||||||||||||||    
T  25876569 actttcccatggtgggaaaaaaatcttctttcccaaattaaatggcacct 25876520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 1365877 - 1365829
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||||||||||||||| || ||||||||||||||||||||| ||||    
T  1365877 actttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 1365829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 37640538 - 37640601
Alignment:
Q  286 catttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaa 350  Q
    |||||||||||||| ||||||||||| ||||||| |||  ||| |||||||||||||||||||||    
T  37640538 catttaatctaataaacatgatcaac-ttcccatagtgtaaaaaaactctcctttcccaaattaa 37640601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 44098432 - 44098470
Alignment:
Q  321 gtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  44098432 gtgggaaagaactctcctttcccaaattaaatggcacct 44098470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 27918046 - 27918095
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||||||||||||||||| || |||| |||||||||||||| ||||||    
T  27918046 aactttcccatggtgggaaaaaagtctcatttcccaaattaaacggcacc 27918095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 39254835 - 39254787
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||| ||||||||||| || ||||||||||||||||||||| ||||    
T  39254835 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 39254787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 358
Target Start/End: Complemental strand, 43924582 - 43924490
Alignment:
Q  266 tatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||| ||||||||||   |||||||||||  | ||  || | |||||||||||||||||| ||||  |||||||||||||||||| ||||    
T  43924582 tatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaattaaatgccacc 43924490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 360
Target Start/End: Original strand, 39255752 - 39255802
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    ||||||||||||||||||| || |||| |||||||| ||||||| ||||||    
T  39255752 actttcccatggtgggaaagaagtctcatttcccaagttaaatgccaccta 39255802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 62240 - 62293
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacctagtt 363  Q
    ||||||| ||||||||||| || ||||||||| ||||||||||| |||| ||||    
T  62240 actttcctatggtgggaaagaagtctcctttctcaaattaaatgtcacccagtt 62293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 41092221 - 41092172
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||| ||||||||||||| |||   |||||||||||||||||||||||    
T  41092221 aacttttccatggtgggaaaaaacaagcctttcccaaattaaatggcacc 41092172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 43924974 - 43925059
Alignment:
Q  266 tatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaa 351  Q
    ||||||| ||||||||||   |||||||||||  | ||  || ||||||| |||||||||||| ||||  ||||||||||||||||    
T  43924974 tatgataaaaatatgttctctatttaatctaacggtcaaaattaactttctcatggtgggaaacaacttccctttcccaaattaaa 43925059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 44751656 - 44751607
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||||||| ||||||| || ||||||||||||| ||||||| |||||    
T  44751656 actttcccatgatgggaaagaagtctcctttcccaagttaaatgccacct 44751607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 42345214 - 42345166
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||||||| ||||||| || | | ||||||||||||||||||||||    
T  42345214 actttcccatgatgggaaagaagtttactttcccaaattaaatggcacc 42345166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 182 - 358
Target Start/End: Complemental strand, 17145798 - 17145622
Alignment:
Q  182 attatctttcacatgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgt 281  Q
    |||||||||||||||  |||||||||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||    
T  17145798 attatctttcacatgaatgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaaataatctagtggttgagagagtatgataggaatatgt 17145699  T
Q  282 tcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17145698 tcctcatttaatctaatggacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 17145622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 194 - 359
Target Start/End: Complemental strand, 38072061 - 38071897
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  38072061 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgttcctcatttaat 38071963  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||| ||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||    
T  38071962 ctaatggacatgatcaactttcccatgatgggaaagaactctcctttcctaaattaaatggcacct 38071897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 194 - 358
Target Start/End: Complemental strand, 668342 - 668179
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        |||||| |||||| |||||||||||||| ||||||||| |||||||||    
T  668342 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctggtggttgagagagtatgataggaatatgttcttcatttaat 668244  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  668243 ctaatggacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 668179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 194 - 359
Target Start/End: Original strand, 37864192 - 37864356
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||| ||||||||||    
T  37864192 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgtttctcatttaat 37864290  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||| ||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||    
T  37864291 ctaatggacatgatcaactttcccatggtgggaaagaactcttatttcccaaattaaatggcacct 37864356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 200 - 359
Target Start/End: Original strand, 4261487 - 4261645
Alignment:
Q  200 gtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaata 299  Q
    ||||||||||||||||||||| ||||||||||||||||        ||||||| ||||| |||||||||||||||||||||||||||||||||||||||     
T  4261487 gtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctaatggttgagagagtatgatagaaatatgttcctcatttaatctaatg 4261585  T
Q  300 gacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    || |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  4261586 gagatgatcaactttcccatggtgggaaagaactctcctttcctaaattaaatggcacct 4261645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 194 - 358
Target Start/End: Original strand, 668988 - 669151
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||||||||||| ||    
T  668988 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgttcctcatttgat 669086  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| || |||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||    
T  669087 ctaatggatatgatcaactttcctatggtgggaaaaaactctcatttcccaaattaaatggcacc 669151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 246 - 360
Target Start/End: Complemental strand, 38778966 - 38778852
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    ||||||||||||| |||||||||||||| |||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||    
T  38778966 taatctagtggttgagagagtatgataggaatatgctcctcatttaatctaatggatatgatcaactttcccatggtgggaaagaactctcctttcccaa 38778867  T
Q  346 attaaatggcaccta 360  Q
    |||||||||||||||    
T  38778866 attaaatggcaccta 38778852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 201 - 354
Target Start/End: Complemental strand, 7677573 - 7677421
Alignment:
Q  201 tgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatag 300  Q
    |||||||||||||||||||| |||| |||||||||||        |||| |||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  7677573 tgtggggacatgaaagagagagtgtaaaagatagtataaaaaaa-taatttagtggttgagagagtatgatagaaatatgttcctcatttaatctaatgg 7677475  T
Q  301 acatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatgg 354  Q
    ||||||||||||||  |||||||||||| || ||||||||||||||||||||||    
T  7677474 acatgatcaactttttcatggtgggaaagaattctcctttcccaaattaaatgg 7677421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 246 - 358
Target Start/End: Original strand, 38779500 - 38779611
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    |||||||||| || ||||||||| |||  ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  38779500 taatctagtg-ttgagagagtattataagaatatattcctcatttaatctaatggacatgatcaactttcccatggtgggaaagaactctcctttcccaa 38779598  T
Q  346 attaaatggcacc 358  Q
    |||||||||||||    
T  38779599 attaaatggcacc 38779611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 246 - 358
Target Start/End: Original strand, 17145808 - 17145920
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    ||||||||||||| |||||||||||||| ||||||||  |||||||||||||| |||||||||||||||||||| ||   ||| ||||||||||||||||    
T  17145808 taatctagtggttgagagagtatgataggaatatgttattcatttaatctaatggacatgatcaactttcccatagtaaaaaagaactctcctttcccaa 17145907  T
Q  346 attaaatggcacc 358  Q
    |||||||||||||    
T  17145908 attaaatggcacc 17145920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 246 - 358
Target Start/End: Original strand, 38072227 - 38072339
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    ||||||||||||| |||||||||||||  ||| | ||| |||||||||||||| ||||||||||||||||||||||||| ||| ||||||| ||||||||    
T  38072227 taatctagtggttgagagagtatgataagaatgtattcatcatttaatctaatggacatgatcaactttcccatggtggaaaagaactctcatttcccaa 38072326  T
Q  346 attaaatggcacc 358  Q
    |||||||||||||    
T  38072327 attaaatggcacc 38072339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 281 - 358
Target Start/End: Original strand, 37468976 - 37469053
Alignment:
Q  281 ttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37468976 ttcctcatttaatctaatggacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 37469053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 246 - 354
Target Start/End: Complemental strand, 4261317 - 4261209
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    ||||||||||||| |||||||||||||  ||| | |||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||||||||| ||    
T  4261317 taatctagtggttgagagagtatgataagaatgtattcctcatttaatctaatggacatgatcaactttcccatggtagaaaagaactctcctttcctaa 4261218  T
Q  346 attaaatgg 354  Q
    |||||||||    
T  4261217 attaaatgg 4261209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 260 - 356
Target Start/End: Original strand, 7677759 - 7677855
Alignment:
Q  260 agagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggca 356  Q
    ||||| |||||||  ||| ||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7677759 agagaatatgataagaatgtgttcctcatttaatctaatgaacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggca 7677855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 262 - 360
Target Start/End: Complemental strand, 41194608 - 41194511
Alignment:
Q  262 agagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    |||||||||||  ||||||||||||||| ||| |||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41194608 agagtatgataagaatatgttcctcatt-aatttaatggacatgattaactttcccatggtgggaaagaactctcctttcccaaattaaatggcaccta 41194511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 301 - 359
Target Start/End: Complemental strand, 37468967 - 37468909
Alignment:
Q  301 acatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37468967 acatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 37468909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 260 - 358
Target Start/End: Original strand, 24322301 - 24322399
Alignment:
Q  260 agagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||||||||| |||| |||||||||||| ||||||  | ||  |  | |||||||||||||||| | ||||  |||||||||||||||||||||||    
T  24322301 agagagtatgataaaaatgtgttcctcatttgatctaacggtcaaaaaaacctttcccatggtgggataaaactaacctttcccaaattaaatggcacc 24322399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 29006396 - 29006341
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcacctagttt 364  Q
    |||||||||||||||||||| |||   |||||||||||||||||||||||| ||||    
T  29006396 aactttcccatggtgggaaaaaacaagcctttcccaaattaaatggcacctggttt 29006341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 351
Target Start/End: Complemental strand, 20890247 - 20890206
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaa 351  Q
    ||||||||||||||||||| |||| |||||||||||||||||    
T  20890247 actttcccatggtgggaaaaaactgtcctttcccaaattaaa 20890206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 45887981 - 45888030
Alignment:
Q  311 ctttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    |||||||||||||||||| ||||  |||||||||||||||||| ||||||    
T  45887981 ctttcccatggtgggaaaaaactagcctttcccaaattaaatgccaccta 45888030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 359
Target Start/End: Original strand, 44909360 - 44909408
Alignment:
Q  311 ctttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    |||||||||||||||||| ||||  |||||||||||||||| |||||||    
T  44909360 ctttcccatggtgggaaaaaacttacctttcccaaattaaacggcacct 44909408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 359
Target Start/End: Original strand, 47331954 - 47332002
Alignment:
Q  311 ctttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    |||||||||||||||||| ||||  |||||||||||||||||| |||||    
T  47331954 ctttcccatggtgggaaaaaactagcctttcccaaattaaatgtcacct 47332002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 359
Target Start/End: Original strand, 29007198 - 29007248
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    |||||||||||||||||||| |||   |||||||||||||||||| |||||    
T  29007198 aactttcccatggtgggaaaaaacaagcctttcccaaattaaatgacacct 29007248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 359
Target Start/End: Original strand, 41224842 - 41224892
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    |||||||||||||||||||| ||    ||||||||||||||||||||||||    
T  41224842 aactttcccatggtgggaaaaaataagcctttcccaaattaaatggcacct 41224892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 668420 - 668453
Alignment:
Q  324 ggaaataactctcctttcccaaattaaatggcac 357  Q
    ||||| ||||||||||||||||||||||||||||    
T  668420 ggaaagaactctcctttcccaaattaaatggcac 668453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 4985395 - 4985444
Alignment:
Q  311 ctttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    |||||||||||||||||| ||||  | |||||||||||||||| ||||||    
T  4985395 ctttcccatggtgggaaaaaactagcatttcccaaattaaatgtcaccta 4985444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 4989493 - 4989542
Alignment:
Q  311 ctttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    |||||||||||||||||| ||||  | |||||||||||||||| ||||||    
T  4989493 ctttcccatggtgggaaaaaactagcatttcccaaattaaatgtcaccta 4989542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 297
Target Start/End: Complemental strand, 24321524 - 24321487
Alignment:
Q  260 agagagtatgatagaaatatgttcctcatttaatctaa 297  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  24321524 agagagtatgataaaaatatgttcctcatttgatctaa 24321487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 27599260 - 27599211
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||||||||||||||||| ||||| |||||||||  ||||||| ||||    
T  27599260 aactttcccatggtgggaaacaactcccctttcccattttaaatgccacc 27599211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 27600094 - 27600143
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||||||||||||||||| ||||| |||||||||  ||||||| ||||    
T  27600094 aactttcccatggtgggaaacaactcccctttcccattttaaatgccacc 27600143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 42607160 - 42607095
Alignment:
Q  279 tgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttccca 344  Q
    |||| ||||||| ||||||| ||||  | ||||||||||||||||||||| || || |||||||||    
T  42607160 tgtttctcatttgatctaatggacaaaaacaactttcccatggtgggaaacaattcccctttccca 42607095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 33323871 - 33323915
Alignment:
Q  275 aatatgttcctcatttaatctaatagacatgatcaactttcccat 319  Q
    ||||||||||||||||||||||| |||||| ||||| ||| ||||    
T  33323871 aatatgttcctcatttaatctaacagacataatcaatttttccat 33323915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 344
Target Start/End: Complemental strand, 40319652 - 40319620
Alignment:
Q  312 tttcccatggtgggaaataactctcctttccca 344  Q
    |||||||||||||||||||||||||| ||||||    
T  40319652 tttcccatggtgggaaataactctccattccca 40319620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 45887326 - 45887286
Alignment:
Q  311 ctttcccatggtgggaaataactctcctttcccaaattaaa 351  Q
    |||||||||||||||||| ||||  ||||||||||||||||    
T  45887326 ctttcccatggtgggaaaaaactagcctttcccaaattaaa 45887286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 5e-63; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 194 - 356
Target Start/End: Complemental strand, 33479860 - 33479698
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    |||||||||||||||||||||| |||| ||||||||||||||||        ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33479860 atgggtgtgtggggacatgaaatagagagtgtgaaagatagtataaaaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaat 33479761  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggca 356  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33479760 ctaatggacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggca 33479698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 182 - 356
Target Start/End: Complemental strand, 3542989 - 3542816
Alignment:
Q  182 attatctttcacatgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgt 281  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |        ||||||||||||| |||||||||||||| |||||||    
T  3542989 attatctttcacatgggtgtgtggggacatgaaagagagagtgtgaaagatagt-ttaaaaaaataatctagtggttgagagagtatgataggaatatgt 3542891  T
Q  282 tcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggca 356  Q
    |||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3542890 tcctcatttaatctaatgaacatgatcaactttcccatggtgggaaaaaactctcctttcccaaattaaatggca 3542816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 184 - 358
Target Start/End: Complemental strand, 33018340 - 33018167
Alignment:
Q  184 tatctttcacatgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttc 283  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||        ||||||| ||||| ||||||||||||| ||||||||||    
T  33018340 tatctttcacatgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctaatggttgagagagtatgataaaaatatgttc 33018242  T
Q  284 ctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||    
T  33018241 ctcatttaatctaatggacatgatcaactttccaatgatgggaaagaactctcctttcccaaattaaatggcacc 33018167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 194 - 358
Target Start/End: Original strand, 15083203 - 15083366
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  15083203 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgttcctcatttaat 15083301  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  15083302 ctaatagatatgatcaactttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 15083366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 194 - 358
Target Start/End: Original strand, 33480513 - 33480676
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  33480513 atgggtgtgtgggaacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgttcctcatttaat 33480611  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33480612 ctaatggacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 33480676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 194 - 358
Target Start/End: Complemental strand, 22580098 - 22579935
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    |||||||||| |||||||||||||||| ||||||||||||||||        |||||||||| || |||||||||||||| |||||||||||||||||||    
T  22580098 atgggtgtgtagggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtgattgagagagtatgataggaatatgttcctcatttaat 22580000  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| || |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  22579999 ctaatggatatgatcaactttcccatggtggaaaagaactctcctttcccaaattaaatggcacc 22579935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 194 - 354
Target Start/End: Original strand, 22587195 - 22587354
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||        |||||||||| || || |||||| ||||||||||||||||||||||||    
T  22587195 atgggtgtgtggggacaggaaagagagagtgtgaaagatagtataaaaaaa-taatctagtgattgagtgagtataatagaaatatgttcctcatttaat 22587293  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatgg 354  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22587294 ctaatggacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatgg 22587354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 246 - 358
Target Start/End: Original strand, 3542999 - 3543111
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  3542999 taatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatggtgggaaaaaactctcctttcccaa 3543098  T
Q  346 attaaatggcacc 358  Q
    |||||||||||||    
T  3543099 attaaatggcacc 3543111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 194 - 353
Target Start/End: Complemental strand, 15082560 - 15082402
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    |||||||||| |||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  15082560 atgggtgtgtagggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgttcctcatttaat 15082462  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatg 353  Q
    ||||| ||||||||||||||||||||| ||| ||| ||||||| ||||||||||||||||    
T  15082461 ctaatggacatgatcaactttcccatgatggaaaagaactctcatttcccaaattaaatg 15082402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 246 - 351
Target Start/End: Original strand, 33018352 - 33018457
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  33018352 taatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatggacatgatcaactttcccatggtgggaaagaactctcctttcccaa 33018451  T
Q  346 attaaa 351  Q
    ||||||    
T  33018452 attaaa 33018457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 182 - 359
Target Start/End: Complemental strand, 7193504 - 7193337
Alignment:
Q  182 attatctttcacatgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgt 281  Q
    |||||||||||||||||||||||||||||||| ||      |||||||||||||||        ||||||   |||| |||||||||||||  |||||||    
T  7193504 attatctttcacatgggtgtgtggggacatgagag------tgtgaaagatagtataaaaaaa-taatct---ggttgagagagtatgataagaatatgt 7193415  T
Q  282 tcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7193414 tcctcatttaatctaatggagatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 7193337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 263 - 354
Target Start/End: Original strand, 22582432 - 22582523
Alignment:
Q  263 gagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatgg 354  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22582432 gagtataatagaaatatgttcctcatttaatctaatggacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatgg 22582523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 246 - 360
Target Start/End: Original strand, 7193514 - 7193628
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||| ||| ||| |||||| ||||| |||    
T  7193514 taatctagtggttgagagagtatgatagaaatatattcctcatttaatctaatggatatgatcaactttcccatgatggaaaagaactctactttctcaa 7193613  T
Q  346 attaaatggcaccta 360  Q
    |||||||||||||||    
T  7193614 attaaatggcaccta 7193628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 358
Target Start/End: Original strand, 24126686 - 24126766
Alignment:
Q  278 atgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||| |||||||||| || ||  | |||||||||||||||| ||||||| ||||| |||||||||||||||||| ||||    
T  24126686 atgttcttcatttaatccaaaagttaagatcaactttcccatgatgggaaacaactcccctttcccaaattaaatgccacc 24126766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 24126021 - 24125972
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||||||||||||||||| ||||| |||||||||||||||||| ||||    
T  24126021 aactttcccatggtgggaaacaactcccctttcccaaattaaatgccacc 24125972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 7531877 - 7531829
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||||||||| ||||| || ||||||||||||||||||||| ||||    
T  7531877 actttcccatggtaggaaagaagtctcctttcccaaattaaatgccacc 7531829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 360
Target Start/End: Original strand, 7159341 - 7159391
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    ||||||||||| ||||||| || | | ||||||||||||||||||||||||    
T  7159341 actttcccatgatgggaaaaaagtttgctttcccaaattaaatggcaccta 7159391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 358
Target Start/End: Original strand, 15082638 - 15082672
Alignment:
Q  324 ggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| |||||||||||||||||||||||||||||    
T  15082638 ggaaagaactctcctttcccaaattaaatggcacc 15082672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 358
Target Start/End: Complemental strand, 22580631 - 22580597
Alignment:
Q  324 ggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| |||||||||||||||||||||||||||||    
T  22580631 ggaaagaactctcctttcccaaattaaatggcacc 22580597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 358
Target Start/End: Complemental strand, 22587117 - 22587083
Alignment:
Q  324 ggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| |||||||||||||||||||||||||||||    
T  22587117 ggaaagaactctcctttcccaaattaaatggcacc 22587083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 358
Target Start/End: Original strand, 33479938 - 33479972
Alignment:
Q  324 ggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| |||||||||||||||||||||||||||||    
T  33479938 ggaaagaactctcctttcccaaattaaatggcacc 33479972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 7532440 - 7532489
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||||||||||  ||| || ||||||||||||||||||||| |||||    
T  7532440 actttcccatggtgaaaaagaagtctcctttcccaaattaaatgccacct 7532489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 14337557 - 14337606
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||||||| ||||||| || | | |||||||||||||||||||||||    
T  14337557 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacct 14337606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 9574571 - 9574619
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||| ||||||||||| || ||||||||||||| ||||||| ||||    
T  9574571 actttcctatggtgggaaagaagtctcctttcccaagttaaatgccacc 9574619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 194 - 362
Target Start/End: Original strand, 36750323 - 36750489
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36750323 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaa--taatctagtggttgagagagtatgatagaaatatgttcctcatttaat 36750420  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacctagt 362  Q
    |||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36750421 ctaatgaacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacctagt 36750489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 184 - 359
Target Start/End: Original strand, 32490070 - 32490244
Alignment:
Q  184 tatctttcacatgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttc 283  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||||    
T  32490070 tatctttcacatgggtgtgtggggacatgaaagagggagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgttc 32490168  T
Q  284 ctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||    
T  32490169 ctcatttaatctaatggacatgatcaacttttccatggtgggaaagaactctcctttcccaaattaaatggtacct 32490244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 182 - 358
Target Start/End: Original strand, 19132685 - 19132860
Alignment:
Q  182 attatctttcacatgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgt 281  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||| |||        ||||| ||||||| |||||||||||||  |||||||    
T  19132685 attatctttcacatgggtgtgtggggacatgaaagagagaatgtgaaagataatataaaaaaa-taatccagtggttgagagagtatgataagaatatgt 19132783  T
Q  282 tcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  19132784 tcctcatttaatctaatggacatgatcaactttcccatggtgggaaagaactttcctttcccaaattaaatggcacc 19132860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 194 - 358
Target Start/End: Original strand, 38923550 - 38923713
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38923550 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgatagaaatatgttcctcatttaat 38923648  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||  |||| ||||||||| ||||||||||||| ||||||| |||||||||||||||||||||    
T  38923649 ctaatgaacattatcaacttttccatggtgggaaagaactctcatttcccaaattaaatggcacc 38923713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 194 - 358
Target Start/End: Original strand, 45242872 - 45243035
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| |||||||||||| |||        ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  45242872 atgggtgtgtggggacatgaaagagagagtgtgaaagataatataaaaaaa-taatctagtggttgagagagtatgataggaatatgttcctcatttaat 45242970  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||||| |||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||    
T  45242971 ctaatagatatgatcaactttcccatggtggaaaagaactcttctttcccaaattaaatggcacc 45243035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 194 - 357
Target Start/End: Complemental strand, 38922906 - 38922744
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||| ||||||||||    
T  38922906 atgggtgtgtgaggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgtttctcatttaat 38922808  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcac 357  Q
    ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38922807 ctaatggatatgatcaactttcccatggtaggaaataactctcctttcccaaattaaatggcac 38922744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 194 - 357
Target Start/End: Complemental strand, 45242229 - 45242067
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  45242229 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgttcctcatttaat 45242131  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcac 357  Q
    ||||| ||||||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||||    
T  45242130 ctaatggacatgatcaactttcccatgatggaaaagaactctcatttcccaaattaaatggcac 45242067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 194 - 360
Target Start/End: Complemental strand, 41755662 - 41755497
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  41755662 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatatagtggttgagagagtatgatagaaatatgttcctcatttaat 41755564  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    |||||  |||||||||| |||| |||||||||||| |||||||||||||||||||||||| ||||||    
T  41755563 ctaatgaacatgatcaattttctcatggtgggaaaaaactctcctttcccaaattaaatgacaccta 41755497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 194 - 360
Target Start/End: Complemental strand, 3998091 - 3997926
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3998091 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgatagaaatatgttcctcatttaat 3997993  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    ||||| || |||||||||||||||||  ||||||| |||| || ||||| |||||||||||||||||    
T  3997992 ctaatggatatgatcaactttcccatcatgggaaagaactttcatttcctaaattaaatggcaccta 3997926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 194 - 356
Target Start/End: Complemental strand, 3971155 - 3970994
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||| ||||||| |||||||||||||| |||||||||||||||||||    
T  3971155 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatcaagtggttgagagagtatgataggaatatgttcctcatttaat 3971057  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggca 356  Q
    ||||| ||||||||||||||| ||||||||  ||| ||||||| |||||||||||||||||||    
T  3971056 ctaatggacatgatcaacttttccatggtgaaaaaaaactctcatttcccaaattaaatggca 3970994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 198 - 360
Target Start/End: Original strand, 3971791 - 3971952
Alignment:
Q  198 gtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaa 297  Q
    ||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3971791 gtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaa 3971889  T
Q  298 tagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    | || |||||||||||||||||  ||||||| |||| || ||||| |||||||||||||||||    
T  3971890 tggatatgatcaactttcccatcatgggaaagaactttcatttcctaaattaaatggcaccta 3971952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 194 - 360
Target Start/End: Complemental strand, 44686417 - 44686253
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||| ||||||||||    
T  44686417 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgtttctcatttaat 44686319  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    ||||| |||||||||||||||| |||||| | ||| ||||||||||| |||||||||||||||||||    
T  44686318 ctaatggacatgatcaactttctcatggt-gaaaaaaactctccttttccaaattaaatggcaccta 44686253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 194 - 359
Target Start/End: Original strand, 41756317 - 41756481
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||| ||||| |||||||||||||| |||||||||||||||||||    
T  41756317 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctaatggttgagagagtatgataggaatatgttcctcatttaat 41756415  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    |||||  |||||||||||||||||||| ||||||| ||||||||||||| || ||||||| |||||    
T  41756416 ctaatgaacatgatcaactttcccatgatgggaaagaactctcctttcctaacttaaatgacacct 41756481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 7 - 189
Target Start/End: Complemental strand, 47676606 - 47676400
Alignment:
Q  7 aaaatgcagtagactgcaacaatcttcagttgaaatgaaagtgtaaatcatcatcaaaacataaacaatc--------------atcacttaaaaagcac 92  Q
    ||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||    
T  47676606 aaaatgcagtaaaatgcaacaatcttaagttgaaatgaaagtgtaaatcatcatcaaaacataaacaatctacactaagtaatcatcacttaaaaagcac 47676507  T
Q  93 taaactgaaacaatctagagttgaaataaaagtgttaatcatcgtcaacactt----------aaaatgcaacaatttaaagttaaaataattgtgtgaa 182  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||| ||          ||||||||||||| |||||||||||||||||||| ||    
T  47676506 taaactgcaacaatctagagtggaaataaaagtgttaatcatcgtcaacatttaaaatgcagcaaaatgcaacaatctaaagttaaaataattgtgttaa 47676407  T
Q  183 ttatctt 189  Q
    |||||||    
T  47676406 ttatctt 47676400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 194 - 358
Target Start/End: Complemental strand, 52492049 - 52491891
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||||||||||||||| |||||||    
T  52492049 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgatagaaatatgttccttatttaat 52491951  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| ||||||||||||||| |||     ||||| |||||||||||||||||||||||||||||    
T  52491950 ctaatggacatgatcaacttttcca-----ggaaagaactctcctttcccaaattaaatggcacc 52491891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 194 - 356
Target Start/End: Original strand, 3998726 - 3998887
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| |||| |||||||||||        ||||| ||||||| |||||||||||||| |||||||||||||||||||    
T  3998726 atgggtgtgtggggacatgaaagagagagtgtaaaagatagtataaaaaaa-taatcaagtggttgagagagtatgataggaatatgttcctcatttaat 3998824  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggca 356  Q
    ||||| ||||||||||||||| ||||||||  ||| ||||||| |||||||||||||||||||    
T  3998825 ctaatggacatgatcaacttttccatggtgaaaaaaaactctcatttcccaaattaaatggca 3998887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 246 - 358
Target Start/End: Complemental strand, 19132675 - 19132563
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||    
T  19132675 taatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatagtaggaaagaactctcctttcccaa 19132576  T
Q  346 attaaatggcacc 358  Q
    |||||||||||||    
T  19132575 attaaatggcacc 19132563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 252 - 358
Target Start/End: Complemental strand, 32490052 - 32489946
Alignment:
Q  252 agtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaa 351  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||| || |||||||||||||||||||    
T  32490052 agtggttgagagagtatgatagaaatatgttccttatttaatctaatggacatgatcaactttcccatggtggaaaagaattctcctttcccaaattaaa 32489953  T
Q  352 tggcacc 358  Q
    |||||||    
T  32489952 tggcacc 32489946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 204 - 359
Target Start/End: Original strand, 44687058 - 44687212
Alignment:
Q  204 ggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagaca 303  Q
    ||||||||||||||||| ||||||||||||||||        ||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||  | |    
T  44687058 ggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctaatggttgagagagtatgataggaatattttcctcatttaatctaatgaata 44687156  T
Q  304 tgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||||||| ||||||||| ||| || |||||||||||||||||||||||||||    
T  44687157 tgatcaacttttccatggtggaaaagaattctcctttcccaaattaaatggcacct 44687212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 246 - 353
Target Start/End: Complemental strand, 36750157 - 36750050
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    ||||||||||||| |||||||||||||  ||| | ||||||||||||||||||  |||||||||||||| ||||||||| ||| ||||||||||||||||    
T  36750157 taatctagtggttgagagagtatgataagaatgtattcctcatttaatctaatgaacatgatcaacttttccatggtggaaaagaactctcctttcccaa 36750058  T
Q  346 attaaatg 353  Q
    ||||||||    
T  36750057 attaaatg 36750050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 246 - 359
Target Start/End: Original strand, 52492215 - 52492328
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    ||||||||||||| |||||||||||||  ||| | |||||||||||||||||| ||||||| ||||||| ||||||||| ||| ||||||| ||||||||    
T  52492215 taatctagtggttgagagagtatgataagaatgtattcctcatttaatctaatggacatgaacaacttttccatggtggaaaagaactctcatttcccaa 52492314  T
Q  346 attaaatggcacct 359  Q
    |||||||| |||||    
T  52492315 attaaatgacacct 52492328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 359 - 434
Target Start/End: Complemental strand, 47671943 - 47671868
Alignment:
Q  359 tagtttccattccacaaatcataaaacattttcaaccaatcaagtattactcaataagtaaagaggttttaaactt 434  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  47671943 tagtttccatcccacaaatcataaaacattttcaaccaatcaagtagtacccaataagtaaagaggttttaaactt 47671868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 358
Target Start/End: Original strand, 31556217 - 31556264
Alignment:
Q  311 ctttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||    
T  31556217 ctttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 31556264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 360
Target Start/End: Complemental strand, 49756324 - 49756273
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    ||||||||||||||||||||||||  |||||| |||||||||||||||||||    
T  49756324 aactttcccatggtgggaaataacattccttttccaaattaaatggcaccta 49756273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 150
Target Start/End: Complemental strand, 47676732 - 47676617
Alignment:
Q  36 ttgaaatgaaagtgtaaatcatcatcaaaacat-aaacaatcatcacttaaaaagcactaaactgaaacaatctagagttgaaataaaagtgttaatcat 134  Q
    |||||| |||||||| ||||||||| |||| || ||||||||| ||||||||| |||  ||| |  ||||  ||| | ||||||||||||||| ||||||    
T  47676732 ttgaaaagaaagtgtgaatcatcataaaaaaattaaacaatcaacacttaaaatgcataaaaattcaacagcctaaacttgaaataaaagtgtgaatcat 47676633  T
Q  135 cgtcaacacttaaaat 150  Q
    |||||| || ||||||    
T  47676632 cgtcaaaacctaaaat 47676617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 359
Target Start/End: Complemental strand, 14667345 - 14667296
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    |||||||||||||||||||| || ||||||||||||||||||| |||||||    
T  14667345 aactttcccatggtgggaaaaaa-tctcctttcccaaattaaacggcacct 14667296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 358
Target Start/End: Complemental strand, 17227014 - 17226968
Alignment:
Q  312 tttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||||||||||||| || ||||||||||||||||||||| ||||    
T  17227014 tttcccatggtgggaaagaaatctcctttcccaaattaaatgccacc 17226968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 359
Target Start/End: Original strand, 37105076 - 37105126
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    |||||||||||||||||||| || |||| |||||||||||||| |||||||    
T  37105076 aactttcccatggtgggaaaaaagtctcgtttcccaaattaaacggcacct 37105126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 324
Target Start/End: Complemental strand, 45500584 - 45500507
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgg 324  Q
    |||||||||| || ||||||||  |||  ||| |||||||||||||||||||| ||||| |||||||||||||| ||||    
T  45500584 taatctagtg-ttgagagagtagaataagaatgtgttcctcatttaatctaatggacataatcaactttcccattgtgg 45500507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 47675273 - 47675224
Alignment:
Q  101 aacaatctagagttgaaataaaagtgttaatcatcgtcaacacttaaaat 150  Q
    ||||||||| ||||||||||||||||  |||||||||||| |||||||||    
T  47675273 aacaatctaaagttgaaataaaagtgcgaatcatcgtcaaaacttaaaat 47675224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 49757181 - 49757230
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||||||||||| ||||| || ||||||||||||||||||| ||||||    
T  49757181 aactttcccatggtaggaaaaaagtctcctttcccaaattaaacggcacc 49757230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 42145277 - 42145325
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcac 357  Q
    |||||||| ||||||| ||| || |||||||||||||||||||||||||    
T  42145277 aactttcctatggtggaaaaaaagtctcctttcccaaattaaatggcac 42145325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 358
Target Start/End: Complemental strand, 31556235 - 31556188
Alignment:
Q  311 ctttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||||||  ||||||| ||||||||||| |||||||||||||||||    
T  31556235 ctttcccatcatgggaaagaactctccttttccaaattaaatggcacc 31556188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 43638078 - 43638129
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacctag 361  Q
    ||||||||||| ||||||| || | | |||||||||||||||||||||||||    
T  43638078 actttcccatgatgggaaagaagtttactttcccaaattaaatggcacctag 43638129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 358
Target Start/End: Complemental strand, 38923472 - 38923438
Alignment:
Q  324 ggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| |||||||||||||||||||||||||||||    
T  38923472 ggaaagaactctcctttcccaaattaaatggcacc 38923438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 358
Target Start/End: Complemental strand, 42144411 - 42144369
Alignment:
Q  316 ccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||||| |||||||  ||||||||||||||||||||||||    
T  42144411 ccatggtggaaaataacattcctttcccaaattaaatggcacc 42144369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 358
Target Start/End: Original strand, 45242307 - 45242341
Alignment:
Q  324 ggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| |||||||||||||||||||||||||||||    
T  45242307 ggaaagaactctcctttcccaaattaaatggcacc 45242341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 17227955 - 17227996
Alignment:
Q  317 catggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||||||||| || ||||||||||||||||||||| ||||    
T  17227955 catggtgggaaagaagtctcctttcccaaattaaatgccacc 17227996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 25329431 - 25329382
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||||||| |||||||||| | | |||||| ||||||||||||||||    
T  25329431 actttcccatgatgggaaataagtttgctttcctaaattaaatggcacct 25329382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 38337433 - 38337518
Alignment:
Q  266 tatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaa 351  Q
    ||||||| ||||||||||   |||||||||||  | ||  || | |||||||||||||||||| ||||  ||||||||||||||||    
T  38337433 tatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaattaaa 38337518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 39901894 - 39901846
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||||||||||||||| ||||||| |||||||  ||||| ||||||    
T  39901894 actttcccatggtgggaaagaactctcatttcccaggttaaacggcacc 39901846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 182 - 359
Target Start/End: Complemental strand, 38834562 - 38834386
Alignment:
Q  182 attatctttcacatgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgt 281  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| ||||||||||||| ||||||||    
T  38834562 attatctttcacatgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataaaaatatgt 38834464  T
Q  282 tcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||  || ||||||||||||||||||||||||||    
T  38834463 tcctcatttaatctaatggacatgatcaactttcccgtggtgggaaagtaccctcctttcccaaattaaatggcacct 38834386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 194 - 358
Target Start/End: Original strand, 21471839 - 21472002
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  21471839 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgttcctcatttaat 21471937  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21471938 ctaatggatatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 21472002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 194 - 360
Target Start/End: Complemental strand, 21471180 - 21471015
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||| | |||||||||||||| ||||||||| |||||||||    
T  21471180 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggctgagagagtatgataggaatatgttcttcatttaat 21471082  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21471081 ctaatggacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcaccta 21471015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 194 - 359
Target Start/End: Complemental strand, 37548163 - 37547997
Alignment:
Q  194 atgggtgtgtggggacatgaaagagaggg--tgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcattta 291  Q
    ||||||||||||||||||||||||||| |  |||||||||| ||||        ||||||||||||| |||||||||||||| |||||||||||||||||    
T  37548163 atgggtgtgtggggacatgaaagagagagagtgtgaaagatggtataaaaaaa-taatctagtggttgagagagtatgataggaatatgttcctcattta 37548065  T
Q  292 atctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  37548064 atctaatggacatgatcaactttcccatgatgggaaagaactctcctttcccaaattaaatggcacct 37547997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 246 - 359
Target Start/End: Original strand, 38834572 - 38834685
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| ||||| ||||||||||||||||    
T  38834572 taatctagtggttgagagagtatgatagaaatatgttcttcatttaatctaatggacatgatcaactttcccacggtaggaaaaaactctcctttcccaa 38834671  T
Q  346 attaaatggcacct 359  Q
    ||||||||||||||    
T  38834672 attaaatggcacct 38834685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 246 - 358
Target Start/End: Complemental strand, 13134430 - 13134318
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  13134430 taatctagtggttgatagagtatgatagaaatatgttcctcatttaatttaatggacatgatcaactttcctatggtgggaaagaactctcctttcccaa 13134331  T
Q  346 attaaatggcacc 358  Q
    |||||||||||||    
T  13134330 attaaatggcacc 13134318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 246 - 358
Target Start/End: Complemental strand, 14573372 - 14573261
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    |||||||||| || ||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  14573372 taatctagtg-ttgagagagtatgataaaaatatattcctcatttaatctaatggacatgatcaactttcccatggtgggaaaaaactctcctttcccaa 14573274  T
Q  346 attaaatggcacc 358  Q
    |||||||||||||    
T  14573273 attaaatggcacc 14573261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 247 - 360
Target Start/End: Original strand, 14573936 - 14574049
Alignment:
Q  247 aatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaa 346  Q
    |||||||||||| |||||||||||||| |||||||| ||||||||||||||| || |||||||||||||  ||||||||||| |||||||||||||||||    
T  14573936 aatctagtggttgagagagtatgataggaatatgtttctcatttaatctaatggatatgatcaactttcttatggtgggaaagaactctcctttcccaaa 14574035  T
Q  347 ttaaatggcaccta 360  Q
    ||||||||||||||    
T  14574036 ttaaatggcaccta 14574049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 260 - 358
Target Start/End: Original strand, 4479652 - 4479750
Alignment:
Q  260 agagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||||||||||  |||||||||||||||||||||||| |||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  4479652 agagagtatgataagaatatgttcctcatttaatctaatggacatgattaactttcccatggtgagaaagaactctcctttcccaaattaaatggcacc 4479750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 33433160 - 33433208
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||||||||||||||| |||||||||||| ||||||||| ||||||    
T  33433160 actttcccatggtgggaaagaactctcctttctcaaattaaacggcacc 33433208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 1164788 - 1164825
Alignment:
Q  322 tgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  1164788 tgggaaagaactctcctttcccaaattaaatggcacct 1164825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 5276513 - 5276464
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||||||||||||||| || ||||||||||||| ||||||| |||||    
T  5276513 actttcccatggtgggaaagaagtctcctttcccaagttaaatgccacct 5276464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 360
Target Start/End: Complemental strand, 4478899 - 4478849
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    ||||||||||| ||||||| || | | ||||||||||||||||||||||||    
T  4478899 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcaccta 4478849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 359
Target Start/End: Original strand, 30545434 - 30545484
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    |||||||||||  ||||||| ||||  ||||||||||||||||||||||||    
T  30545434 aactttcccatcatgggaaacaacttccctttcccaaattaaatggcacct 30545484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 16426602 - 16426553
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||| ||||||||||||| |||   |||||||||||||||||||||||    
T  16426602 aacttttccatggtgggaaaaaacaagcctttcccaaattaaatggcacc 16426553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 19521917 - 19521966
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||||||| ||||||| || | | |||||||||||||||||||||||    
T  19521917 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacct 19521966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 40992271 - 40992222
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||||||||||| ||||| |||   |||||||||||||||||||||||    
T  40992271 aactttcccatggtaggaaaaaacaaacctttcccaaattaaatggcacc 40992222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 30544779 - 30544727
Alignment:
Q  306 atcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||||||||||  ||||||| ||||  | |||||||||||||||||||||    
T  30544779 atcaactttcccatcatgggaaacaacttccatttcccaaattaaatggcacc 30544727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 359
Target Start/End: Complemental strand, 41984774 - 41984726
Alignment:
Q  311 ctttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||||||||| |||| ||||  |||||||||||||||||| |||||    
T  41984774 ctttcccatggtgagaaaaaactagcctttcccaaattaaatgccacct 41984726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 45139738 - 45139690
Alignment:
Q  312 tttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    ||||||||| ||| ||| || ||||||||||||||||||||| ||||||    
T  45139738 tttcccatgatggaaaagaagtctcctttcccaaattaaatgccaccta 45139690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 194 - 359
Target Start/End: Original strand, 44 - 209
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  44 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaat 143  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    |||||  |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  144 ctaatgaacataatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 194 - 358
Target Start/End: Complemental strand, 16270371 - 16270207
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    |||||||||| |||||||||||||| | ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  16270371 atgggtgtgtagggacatgaaagagggagtgtgaaagatagtataaaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaat 16270272  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16270271 ctaatggacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 16270207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 182 - 358
Target Start/End: Complemental strand, 43737904 - 43737729
Alignment:
Q  182 attatctttcacatgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgt 281  Q
    |||||||||||||||||||||||||||||| ||||||||  ||||||||||||| |        ||||||||||||| ||||||||||||| |||||| |    
T  43737904 attatctttcacatgggtgtgtggggacatcaaagagagaatgtgaaagatagtgtaaaaaaa-taatctagtggttgagagagtatgataaaaatatat 43737806  T
Q  282 tcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43737805 tcctcatttaatctaatggacatgatcaactttcccatggtgggaaataactctactttcccaaattaaatggcacc 43737729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 194 - 360
Target Start/End: Complemental strand, 51974600 - 51974435
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    |||||||||||||||||||||||||||  |||||||||||||||        ||||||||| ||| |||||||||||||| ||||||||| |||||||||    
T  51974600 atgggtgtgtggggacatgaaagagagaatgtgaaagatagtataaaaaaa-taatctagtagttgagagagtatgataggaatatgttcttcatttaat 51974502  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  51974501 ctaatagacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcaccta 51974435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 194 - 358
Target Start/End: Original strand, 51975112 - 51975275
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||| |||||||||||||||||||    
T  51975112 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttaagagagtatgataggaatatgttcctcatttaat 51975210  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| |||||||||||||||||||| |||  ||| |||||||||||||||||||||||||||||    
T  51975211 ctaattgacatgatcaactttcccatagtgaaaaagaactctcctttcccaaattaaatggcacc 51975275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 184 - 358
Target Start/End: Complemental strand, 23440789 - 23440617
Alignment:
Q  184 tatctttcacatgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttc 283  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| ||||||||     
T  23440789 tatctttcacatgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaa--taatctagtggttgagagagtatgataggaatatgttt 23440692  T
Q  284 ctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||||||||||| ||||| ||||||||| |||| || ||||| |||||||||||||||||||||||||||||    
T  23440691 ctcatttaatctaatggacataatcaacttttccatagttggaaagaactctcctttcccaaattaaatggcacc 23440617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 194 - 360
Target Start/End: Original strand, 48972330 - 48972495
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||| ||||||||||    
T  48972330 atgggtgtgtggggatatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgtttctcatttaat 48972428  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    ||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  48972429 ctaatggacatgatcaacttttccatggtgggaaagaactctcctttcccaaattaaatggcaccta 48972495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 197 - 358
Target Start/End: Original strand, 16271036 - 16271196
Alignment:
Q  197 ggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaatcta 296  Q
    |||||||||||||||||||||||| |||||||| |||||||        ||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  16271036 ggtgtgtggggacatgaaagagagagtgtgaaatatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgttcctcatttaatcta 16271134  T
Q  297 atagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    || ||||||||||||||||||||| || |||| ||||||||||||| |||||||||||||||    
T  16271135 atggacatgatcaactttcccatgatgagaaagaactctcctttcctaaattaaatggcacc 16271196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 197 - 358
Target Start/End: Complemental strand, 9948155 - 9947995
Alignment:
Q  197 ggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaatcta 296  Q
    |||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  9948155 ggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgttcctcatttaatcta 9948057  T
Q  297 atagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||  | |||||||||||| ||||||||||||| |||| | ||||||||||||||||||||||    
T  9948056 atgaatatgatcaacttttccatggtgggaaagaacttttctttcccaaattaaatggcacc 9947995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 246 - 358
Target Start/End: Original strand, 23440801 - 23440913
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    ||||||||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  23440801 taatctagtggttgagagagtatgataggaatatattcctcatttaatctaatggacatgatcaactttcccatggtgggaaagaactctcctttcccaa 23440900  T
Q  346 attaaatggcacc 358  Q
    |||||||||||||    
T  23440901 attaaatggcacc 23440913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 194 - 363
Target Start/End: Original strand, 38931131 - 38931300
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| |||||||||||| |||        |||| |||||||| ||||||||||||||||||||||| || |||||||    
T  38931131 atgggtgtgtggggacatgaaagagagagtgtgaaagataatataaaaaaaataatatagtggttgagagagtatgatagaaatatgtttcttatttaat 38931230  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacctagtt 363  Q
     |||| || |||||||||||||||||||| | ||| |||||| |||||||||||||||||||| ||||||    
T  38931231 ttaatggatatgatcaactttcccatggtagaaaagaactcttctttcccaaattaaatggcatctagtt 38931300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 246 - 359
Target Start/End: Original strand, 43737914 - 43738027
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||    
T  43737914 taatctagtggttgagagaatatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatgatgggaaagaactctcctttcccaa 43738013  T
Q  346 attaaatggcacct 359  Q
    ||||||||||||||    
T  43738014 attaaatggcacct 43738027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 246 - 358
Target Start/End: Original strand, 9948823 - 9948935
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    ||||||||||||| | |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||    
T  9948823 taatctagtggttgatagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatggtgggaaagaactctcctttcctaa 9948922  T
Q  346 attaaatggcacc 358  Q
    |||||||||||||    
T  9948923 attaaatggcacc 9948935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 194 - 358
Target Start/End: Complemental strand, 48971868 - 48971705
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||        |||| |||||||| |||||||||||||| |||||||||||||||||||    
T  48971868 atgggtgtgtgggaacatgaaagagagagtgtgaaagatagtataaaaaaa-taatatagtggttgagagagtatgataggaatatgttcctcatttaat 48971770  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||  | ||||||||||||| ||| |||||||| |||||||||||||||||||||||| ||||    
T  48971769 ctaatttatatgatcaactttctcattgtgggaaagaactctcctttcccaaattaaatgacacc 48971705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 194 - 358
Target Start/End: Complemental strand, 38930475 - 38930312
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| ||||||||||| |||||||    
T  38930475 atgggtgtgtgggaacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgttccttatttaat 38930377  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
     |||| || |||||||||||||||||||||  ||| |||| ||||||||||||||||||| ||||    
T  38930376 ttaatggatatgatcaactttcccatggtgaaaaagaactttcctttcccaaattaaatgacacc 38930312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 246 - 358
Target Start/End: Original strand, 50827027 - 50827138
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    |||| |||||||| ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||    
T  50827027 taatttagtggttgagagagtatgataaaaatatgtttctcatttaatctaatggacatgatcaactttcccatggtgggaaa-aactctcctttctcaa 50827125  T
Q  346 attaaatggcacc 358  Q
    |||||||||||||    
T  50827126 attaaatggcacc 50827138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 194 - 344
Target Start/End: Original strand, 6076753 - 6076901
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||| ||||| |||||||||||||| |||||||| ||||||||||    
T  6076753 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaa--taatctattggttgagagagtatgataggaatatgttactcatttaat 6076850  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttccca 344  Q
     |||| ||||||||||||||| |||| |||||||| ||||||| |||||||    
T  6076851 ataatggacatgatcaacttttccatagtgggaaagaactctcatttccca 6076901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 260 - 358
Target Start/End: Complemental strand, 193948 - 193850
Alignment:
Q  260 agagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||||||||||  ||||||||||||||||||| |||| |||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  193948 agagagtatgataagaatatgttcctcatttaatttaatggacatgattaactttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 193850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 328
Target Start/End: Complemental strand, 27888765 - 27888701
Alignment:
Q  264 agtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaa 328  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27888765 agtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatggtgggaaa 27888701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 260 - 344
Target Start/End: Complemental strand, 6076072 - 6075988
Alignment:
Q  260 agagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttccca 344  Q
    ||||| ||||||| |||| | |||||||||||||||||| |||||||||||||||| |||||| | ||| |||||||||||||||    
T  6076072 agagactatgataaaaatgtattcctcatttaatctaatggacatgatcaactttctcatggtagaaaagaactctcctttccca 6075988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 195 - 334
Target Start/End: Original strand, 31390713 - 31390847
Alignment:
Q  195 tgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaatc 294  Q
    |||||||||||||||||||||||||| |||  ||||||||| |        ||||||| || || |||||||| |||| |||| ||||||||||||| ||    
T  31390713 tgggtgtgtggggacatgaaagagagagtg--aaagatagtgtaaaaaa--taatctaatg-ttgagagagtaggataaaaatgtgttcctcatttattc 31390807  T
Q  295 taatagacatgatcaactttcccatggtgggaaataactc 334  Q
     ||| ||||| ||||||||||||||||||||||| |||||    
T  31390808 caatggacataatcaactttcccatggtgggaaagaactc 31390847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 359
Target Start/End: Complemental strand, 1012596 - 1012546
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    |||||||||||||||||||| || ||||||||||||||||||| |||||||    
T  1012596 aactttcccatggtgggaaaaaaatctcctttcccaaattaaacggcacct 1012546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 340
Target Start/End: Complemental strand, 47334310 - 47334217
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctccttt 340  Q
    |||||||||| || |||||||| ||||   || |||| ||||||||||||||| ||||| |||||||||||||| |||||||| ||||| |||||    
T  47334310 taatctagtg-ttgagagagtaggataaggatttgtttctcatttaatctaatggacataatcaactttcccattgtgggaaacaactccccttt 47334217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 260 - 358
Target Start/End: Original strand, 47334850 - 47334948
Alignment:
Q  260 agagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||||| |||| | || |||| ||||||||||| ||| ||||| ||||||||||| ||||||||||| ||||| | ||||||| | |||||| ||||    
T  47334850 agagagtaggataaagatttgttactcatttaatccaatggacataatcaactttcctatggtgggaaacaactcccttttcccatactaaatgccacc 47334948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 51987875 - 51987826
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||||||||||||||| || ||||||||||||||||||||| |||||    
T  51987875 actttcccatggtgggaaagaagtctcctttcccaaattaaatgccacct 51987826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 360
Target Start/End: Original strand, 1013471 - 1013522
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    |||||||||||||||| |||||||  ||||||||||||||||||| ||||||    
T  1013471 aactttcccatggtggaaaataacattcctttcccaaattaaatgacaccta 1013522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 35616775 - 35616824
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||||||||||||||| || ||||||||||||| ||||||| |||||    
T  35616775 actttcccatggtgggaaagaagtctcctttcccaagttaaatgccacct 35616824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 8560887 - 8560839
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||||||| ||||||| || ||||||||||||||||||||| ||||    
T  8560887 actttcccatgatgggaaagaagtctcctttcccaaattaaatgtcacc 8560839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 323
Target Start/End: Original strand, 40649536 - 40649580
Alignment:
Q  279 tgttcctcatttaatctaatagacatgatcaactttcccatggtg 323  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||||    
T  40649536 tgttccacatttaatctaatggacattatcaactttcccatggtg 40649580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 51988464 - 51988512
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||||||||||| ||| || ||||||||||||||||||||| ||||    
T  51988464 actttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 51988512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 358
Target Start/End: Complemental strand, 16270935 - 16270901
Alignment:
Q  324 ggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| |||||||||||||||||||||||||||||    
T  16270935 ggaaagaactctcctttcccaaattaaatggcacc 16270901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 358
Target Start/End: Original strand, 38930574 - 38930608
Alignment:
Q  324 ggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| |||||||||||||||||||||||||||||    
T  38930574 ggaaagaactctcctttcccaaattaaatggcacc 38930608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 45064734 - 45064685
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||||||| ||||||| ||||   |||||||||||||||||||||||    
T  45064734 actttcccatgatgggaaaaaactaatctttcccaaattaaatggcacct 45064685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 49611562 - 49611607
Alignment:
Q  312 tttcccatggtgggaaataactctcctttcccaaattaaatggcac 357  Q
    ||||||||| ||||||| ||||  ||||||||||||||||||||||    
T  49611562 tttcccatgatgggaaaaaactagcctttcccaaattaaatggcac 49611607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 194701 - 194749
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||||||| ||||||| || | | ||||||||||||||||||||||    
T  194701 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 194749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 14924721 - 14924681
Alignment:
Q  311 ctttcccatggtgggaaataactctcctttcccaaattaaa 351  Q
    |||||||||||||||||| ||||  ||||||||||||||||    
T  14924721 ctttcccatggtgggaaacaacttccctttcccaaattaaa 14924681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 14925343 - 14925383
Alignment:
Q  311 ctttcccatggtgggaaataactctcctttcccaaattaaa 351  Q
    |||||||||||||||||| |||| ||||| |||||||||||    
T  14925343 ctttcccatggtgggaaacaactttccttccccaaattaaa 14925383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 37874112 - 37874064
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||||||||||||||| || |||| |||||||| ||||||| ||||    
T  37874112 actttcccatggtgggaaagaagtctcatttcccaagttaaatgtcacc 37874064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 49610754 - 49610706
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||||||||| |||||| || ||| ||||||||||| ||||||||||    
T  49610754 actttcccatggagggaaaaaagtcttctttcccaaataaaatggcacc 49610706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 194 - 358
Target Start/End: Original strand, 15183902 - 15184065
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||        ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  15183902 atgggtgtgtggggacatgaaagagagagtgtgaaagatagcataaaaaaa-taatctagtggttgagagagtatgataggaatatgttcctcatttaat 15184000  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15184001 ctaatggacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 15184065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 194 - 358
Target Start/End: Complemental strand, 15183252 - 15183088
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||        ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15183252 atgggtgtgtggggacatgaaagtgagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgatagaaatatgttcctcatttaat 15183154  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaat-aactctcctttcccaaattaaatggcacc 358  Q
    ||||| |||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||    
T  15183153 ctaatggacatgatcaactttctcatgatgggaaataaactctcctttcccaaattaaatggcacc 15183088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 198 - 359
Target Start/End: Original strand, 33002705 - 33002865
Alignment:
Q  198 gtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaa 297  Q
    |||| |||||||||||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  33002705 gtgtttggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagagtatgataggaatatgttcctcatttaatctaa 33002803  T
Q  298 tagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    | ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  33002804 tggacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatgacacct 33002865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 194 - 358
Target Start/End: Complemental strand, 686579 - 686417
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||| ||||| |||||||| ||||| |||||||||||||    
T  686579 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagagaatatgataggaatatattcctcatttaat 686481  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  686480 ctaatggacatgatcaactttcccatggtgggaaa-aactctcctttcccaaattaaatggcacc 686417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 210 - 361
Target Start/End: Complemental strand, 8204267 - 8204117
Alignment:
Q  210 atgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatca 309  Q
    ||||||||||| ||||||||||||||||        ||||||||||||| ||| |||||||||| |||||||||||||||||||||||| ||||||||||    
T  8204267 atgaaagagagagtgtgaaagatagtataaaaaaa-taatctagtggttgagatagtatgataggaatatgttcctcatttaatctaatggacatgatca 8204169  T
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacctag 361  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8204168 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacctag 8204117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 182 - 359
Target Start/End: Complemental strand, 8040370 - 8040194
Alignment:
Q  182 attatctttcacatgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgt 281  Q
    |||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||        |||| |||||||| |||||||||||||  ||||| |    
T  8040370 attatctttcacatggatgtgtagggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatgtagtggttgagagagtatgataagaatatat 8040272  T
Q  282 tcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||||||||||||| ||||||||||||||||||| | ||||||| |||| |||||||||||||||||||||||||    
T  8040271 tcctcatttaatctaatggacatgatcaactttcccacgatgggaaagaactgtcctttcccaaattaaatggcacct 8040194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 194 - 357
Target Start/End: Original strand, 687233 - 687395
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatagtatnnnnnnnntaatctagtggttaagagagtatgatagaaatatgttcctcatttaat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||        |||| ||||| || |||||||||||||| |||||||||||||||||||    
T  687233 atgggtgtgtggggacatgaaagagagagtgtgaaagatagtataaaaaaa-taatttagtgattgagagagtatgataggaatatgttcctcatttaat 687331  T
Q  294 ctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcac 357  Q
    ||||| ||||| ||||||||| |||| |||| ||| ||||||||||||||||||||||||||||    
T  687332 ctaatggacataatcaacttttccatagtggaaaagaactctcctttcccaaattaaatggcac 687395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 246 - 359
Target Start/End: Original strand, 12190094 - 12190207
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    ||||||| || || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||    
T  12190094 taatctaatgattgagagagtatgatagaaatatgttcctcatttaatctaatggacatgatcaactttcccatggtgggaaaaaactctcttttcccaa 12190193  T
Q  346 attaaatggcacct 359  Q
    ||||||||||||||    
T  12190194 attaaatggcacct 12190207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 246 - 359
Target Start/End: Original strand, 8040380 - 8040493
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    ||||||||||||| |||||||||||||||||||||||||  |||||||||||| |||||||| |||||||||| ||||||||| || | |||||||||||    
T  8040380 taatctagtggttgagagagtatgatagaaatatgttccctatttaatctaatggacatgattaactttcccacggtgggaaagaaatttcctttcccaa 8040479  T
Q  346 attaaatggcacct 359  Q
    ||||||||||||||    
T  8040480 attaaatggcacct 8040493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 246 - 360
Target Start/End: Original strand, 36626566 - 36626680
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    ||||||||||||| |||||||||||||  ||||| ||||| ||||||| |||  ||||||||||||||||||||||||||||| ||||||| ||||||||    
T  36626566 taatctagtggttgagagagtatgataagaatatattccttatttaatataacggacatgatcaactttcccatggtgggaaagaactctcatttcccaa 36626665  T
Q  346 attaaatggcaccta 360  Q
    |||||||||||||||    
T  36626666 attaaatggcaccta 36626680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 260 - 359
Target Start/End: Complemental strand, 33002030 - 33001931
Alignment:
Q  260 agagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||| |||||||  ||| | |||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||    
T  33002030 agagaatatgataagaatgtattcctcatttaatctaatggacatgatcaacttttccatggtgggaaagaactctcctttcccaaattaaatggtacct 33001931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 311 - 358
Target Start/End: Complemental strand, 39950451 - 39950404
Alignment:
Q  311 ctttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  39950451 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 39950404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 359
Target Start/End: Original strand, 33283973 - 33284072
Alignment:
Q  260 agagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||||||||| |||| |||||||||||| ||||||  | ||  |  | |||||||||||||||| | ||||  ||||||||||||||||||||||||    
T  33283973 agagagtatgataaaaatgtgttcctcatttgatctaacggtcaaaaaaacctttcccatggtgggataaaactaacctttcccaaattaaatggcacct 33284072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 36626556 - 36626501
Alignment:
Q  182 attatctttcacatgggtgtgtggggacatgaaagagagggtgtgaaagatagtat 237  Q
    |||||||||||||||||| ||||| ||||||||||||||  |||||||||||||||    
T  36626556 attatctttcacatgggtatgtggagacatgaaagagagaatgtgaaagatagtat 36626501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 4608589 - 4608638
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||    
T  4608589 aactttcccatggtgggaaataacattcctttcccagattaaatggcacc 4608638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 13654981 - 13654932
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    ||||||| ||||||||||| || ||||||||||||||||||||| |||||    
T  13654981 actttcctatggtgggaaagaagtctcctttcccaaattaaatgtcacct 13654932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 358
Target Start/End: Original strand, 39950444 - 39950480
Alignment:
Q  322 tgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||| |||||||||||||||||||||||||||||    
T  39950444 tgggaaagaactctcctttcccaaattaaatggcacc 39950480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 358
Target Start/End: Complemental strand, 2319313 - 2319266
Alignment:
Q  311 ctttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||||||||||||||| ||||  |||||||||||||||||| ||||    
T  2319313 ctttcccatggtgggaaaaaactagcctttcccaaattaaatgccacc 2319266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 352
Target Start/End: Complemental strand, 4607513 - 4607470
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaat 352  Q
    |||||||||||||||||||| || ||| ||||||||||||||||    
T  4607513 aactttcccatggtgggaaaaaagtctactttcccaaattaaat 4607470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 358
Target Start/End: Original strand, 686667 - 686701
Alignment:
Q  324 ggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| |||||||||||||||||||||||||||||    
T  686667 ggaaagaactctcctttcccaaattaaatggcacc 686701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 352
Target Start/End: Original strand, 17767547 - 17767633
Alignment:
Q  266 tatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaat 352  Q
    ||||||| |||||||||| | | |||||||||| | |   ||| ||||||||||||||||||| |||  |||||||||| |||||||    
T  17767547 tatgataaaaatatgttctttagttaatctaatggtctaaatctactttcccatggtgggaaacaacgatcctttcccatattaaat 17767633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 2319968 - 2320017
Alignment:
Q  311 ctttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    |||||| ||||||||||| ||||  |||||||||||||||||| ||||||    
T  2319968 ctttcctatggtgggaaaaaactagcctttcccaaattaaatgccaccta 2320017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 39167442 - 39167483
Alignment:
Q  312 tttcccatggtgggaaataactctcctttcccaaattaaatg 353  Q
    ||||||||| ||||||| || |||||||||||||||||||||    
T  39167442 tttcccatgatgggaaagaagtctcctttcccaaattaaatg 39167483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 13404701 - 13404753
Alignment:
Q  308 caactttcccatggtgggaaataactctcctttcccaaattaaatggcaccta 360  Q
    ||||||||||||||||||||| ||   ||| ||||||||||||||| ||||||    
T  13404701 caactttcccatggtgggaaaaaagagtccgttcccaaattaaatgccaccta 13404753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 16971033 - 16971081
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||||||| ||||||| ||||   ||||||||||||||||||||||    
T  16971033 actttcccatgatgggaaaaaactagtctttcccaaattaaatggcacc 16971081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 359
Target Start/End: Complemental strand, 26268391 - 26268343
Alignment:
Q  311 ctttcccatggtgggaaataactctcctttcccaaattaaatggcacct 359  Q
    |||||||||||||||||| ||||  | |||||||||||||||| |||||    
T  26268391 ctttcccatggtgggaaaaaactaacatttcccaaattaaatgccacct 26268343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 26688214 - 26688166
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||||||| ||||||| || | | ||||||||||||||||||||||    
T  26688214 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 26688166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 26957945 - 26957897
Alignment:
Q  310 actttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||||||||| ||||||| || | | ||||||||||||||||||||||    
T  26957945 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 26957897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 260 - 358
Target Start/End: Complemental strand, 27319 - 27221
Alignment:
Q  260 agagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||||||||||  ||| |||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  27319 agagagtatgataagaatgtgttcctcatttaatctaatggacatgatcaactttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 27221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 269 - 358
Target Start/End: Original strand, 27534 - 27623
Alignment:
Q  269 gatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    ||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  27534 gataggaatatgttcctcatttaatctaatggatatgatcaactttcccatggtgggaaaaaactctccttttccaaattaaatggcacc 27623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 27498 - 27538
Alignment:
Q  194 atgggtgtgtggggacatgaaagagagggtgtgaaagatag 234  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  27498 atgggtgtgtggggacatgaaagagagagtgtgaaagatag 27538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 246 - 358
Target Start/End: Original strand, 9194 - 9306
Alignment:
Q  246 taatctagtggttaagagagtatgatagaaatatgttcctcatttaatctaatagacatgatcaactttcccatggtgggaaataactctcctttcccaa 345  Q
    ||||||||||||| |||||||||||||  ||||||||| |||||||||||||| |||||||| |||||| ||||||||  ||| ||||||||||| ||||    
T  9194 taatctagtggttgagagagtatgataagaatatgttcatcatttaatctaatggacatgatgaacttttccatggtgaaaaaaaactctccttttccaa 9293  T
Q  346 attaaatggcacc 358  Q
    |||||||| ||||    
T  9294 attaaatgacacc 9306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 17388 - 17339
Alignment:
Q  309 aactttcccatggtgggaaataactctcctttcccaaattaaatggcacc 358  Q
    |||||||||||||||||||| |||   ||||| |||||||||||||||||    
T  17388 aactttcccatggtgggaaaaaacaagccttttccaaattaaatggcacc 17339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2614 times since January 2019
Visitors: 3822