View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0618_low_8 (Length: 426)

Name: NF0618_low_8
Description: NF0618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0618_low_8
NF0618_low_8
[»] chr7 (3 HSPs)
chr7 (1-415)||(32413543-32413961)
chr7 (285-357)||(45498200-45498272)
chr7 (284-346)||(6889134-6889196)
[»] chr6 (8 HSPs)
chr6 (249-357)||(7115535-7115647)
chr6 (249-357)||(7120607-7120719)
chr6 (249-357)||(7124011-7124123)
chr6 (252-346)||(8656643-8656741)
chr6 (256-346)||(7175430-7175524)
chr6 (272-357)||(7140752-7140837)
chr6 (272-357)||(8680366-8680451)
chr6 (276-317)||(33844310-33844351)
[»] chr8 (1 HSPs)
chr8 (159-333)||(27701805-27701983)
[»] chr3 (9 HSPs)
chr3 (272-369)||(7104294-7104391)
chr3 (258-376)||(4149545-4149667)
chr3 (258-376)||(4165317-4165439)
chr3 (282-369)||(2996512-2996599)
chr3 (279-346)||(7177938-7178005)
chr3 (272-357)||(476016-476101)
chr3 (272-310)||(25601731-25601769)
chr3 (243-357)||(7125904-7126021)
chr3 (272-369)||(7177801-7177898)
[»] chr1 (1 HSPs)
chr1 (285-357)||(14288925-14288997)
[»] chr4 (3 HSPs)
chr4 (272-379)||(3978055-3978162)
chr4 (277-309)||(29676507-29676539)
chr4 (272-348)||(52186813-52186889)
[»] chr5 (3 HSPs)
chr5 (272-348)||(25064237-25064313)
chr5 (311-376)||(38142201-38142266)
chr5 (305-357)||(7022045-7022097)
[»] chr2 (1 HSPs)
chr2 (272-333)||(43864075-43864136)
[»] scaffold0896 (1 HSPs)
scaffold0896 (252-317)||(1474-1543)


Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 32413961 - 32413543
Alignment:
Q  1 gtccgacaagaaaagaaactaggtggaaagtattccatattaccagcaacagatatatctaattgctggacgttgtgcgaaacagcatattttacaannn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||       
T  32413961 gtccgacaagaaaagaaactaggtggaaagtattccatattaccagcaacagatacatctaattgctggacgttgtgcgaaacagcatattttacaattt 32413862  T
Q  101 nnnnnagtaggtaaggctctacgattgcagtgcggcaaaaatccacagtatgcaatgaggttgagtcatttcgaagagacaaaactcgagacacgaattt 200  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32413861 ttttgagtaggtaaggctctacgattgcagtgcggcaaaaatccacagtatgcaatgaggttgagtcatttcgaagagacaaaactcgagacacgaattt 32413762  T
Q  201 cgcgaatctcttgacatttctaaagtctgaagaccttaacgcaagggatggaagacgcttccagagattct----tcttgtggacaaaatgcaagtttga 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  32413761 cgcgaatctcttgacatttctaaagtctgaagaccttaacgcaagggatggaagacgcttccagagattcttccatcttgtggacaaaatgcaagtttga 32413662  T
Q  297 acggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcaccgagtctgtcttgattttcgctattattgctgttatgtt 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  32413661 acggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcactgagtctgtcttgattttcactattattgctgttatgtt 32413562  T
Q  397 caagctttcgtttcttcat 415  Q
    |||||||||||||||||||    
T  32413561 caagctttcgtttcttcat 32413543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 357
Target Start/End: Original strand, 45498200 - 45498272
Alignment:
Q  285 atgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcac 357  Q
    ||||||||||||||||||  |||||| |||||| | || |  |||||||||||||| ||||||| ||||||||    
T  45498200 atgcaagtttgaacggcgcatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcac 45498272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 346
Target Start/End: Complemental strand, 6889196 - 6889134
Alignment:
Q  284 aatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatc 346  Q
    ||||||||||||||| |||| | |||||| |||| | |||||||||||||| | |||||||||    
T  6889196 aatgcaagtttgaacagcgtctatggtgtccaaaaaagagagtatgtgaagaataacacaatc 6889134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 249 - 357
Target Start/End: Original strand, 7115535 - 7115647
Alignment:
Q  249 tggaagacgcttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaa 344  Q
    |||||||| ||||||||||||||||    || |||||||||  ||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||||    
T  7115535 tggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaa 7115634  T
Q  345 tcagataaatcac 357  Q
    |||| ||||||||    
T  7115635 tcaggtaaatcac 7115647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 249 - 357
Target Start/End: Original strand, 7120607 - 7120719
Alignment:
Q  249 tggaagacgcttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaa 344  Q
    |||||||| ||||||||||||||||    || |||||||||  ||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||||    
T  7120607 tggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaa 7120706  T
Q  345 tcagataaatcac 357  Q
    |||| ||||||||    
T  7120707 tcaggtaaatcac 7120719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 249 - 357
Target Start/End: Original strand, 7124011 - 7124123
Alignment:
Q  249 tggaagacgcttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaa 344  Q
    |||||||| ||||||||||||||||    || |||||||||  ||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||||    
T  7124011 tggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaa 7124110  T
Q  345 tcagataaatcac 357  Q
    |||| ||||||||    
T  7124111 tcaggtaaatcac 7124123  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 252 - 346
Target Start/End: Original strand, 8656643 - 8656741
Alignment:
Q  252 aagacgcttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatc 346  Q
    ||||||||||||||||||||||    || ||| |||||  ||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||||||    
T  8656643 aagacgcttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatc 8656741  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 256 - 346
Target Start/End: Original strand, 7175430 - 7175524
Alignment:
Q  256 cgcttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatc 346  Q
    ||||||||||||||||||    | ||||| ||||||||||||||||| ||||| ||||| || ||  ||||||||||||||||||||||||||||    
T  7175430 cgcttccagagattcttccatctagtggataaaatgcaagtttgaactgcgtgcttggtttttaacaaggagagtatgtgaagtaaaacacaatc 7175524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 7140752 - 7140837
Alignment:
Q  272 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcac 357  Q
    |||| |||||||||| ||||||||||| |||| ||| || |||||| | ||||||||||||||||||||||| || | ||||||||    
T  7140752 tcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaacacagtcgggtaaatcac 7140837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 8680366 - 8680451
Alignment:
Q  272 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcac 357  Q
    |||| |||||||||| ||||||||||| |||| ||| || |||||| | ||||||||||||||||||||||| || | ||||||||    
T  8680366 tcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaacacagtcggctaaatcac 8680451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 33844310 - 33844351
Alignment:
Q  276 gtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaa 317  Q
    |||||||||||||||||||||||||||| || ||| ||||||    
T  33844310 gtggacaaaatgcaagtttgaacggcgttttcggttttcaaa 33844351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 159 - 333
Target Start/End: Original strand, 27701805 - 27701983
Alignment:
Q  159 ggttgagtcatttcgaagagacaaaactcgagacacgaatttcgcgaatctcttgacatttctaaagtctgaagaccttaacgcaagggatggaagacgc 258  Q
    |||||||||||  |||||||||||||| |||||||||||||| |  || ||||||| | || |||||| ||| ||  ||||   ||||| |||||||||     
T  27701805 ggttgagtcatcgcgaagagacaaaacccgagacacgaatttggtaaaactcttgagagttttaaagtgtgaggagtttaatctaagggttggaagacgt 27701904  T
Q  259 ttccagagatt----cttcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaa 333  Q
    |||||||||||    | ||||||||| | ||||  |||||||||||| |||||||| |  |||||||||||||||||||    
T  27701905 ttccagagattgttccatcttgtggaaagaatggtagtttgaacggcatgtttggtttctaaagaggagagtatgtgaa 27701983  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 369
Target Start/End: Original strand, 7104294 - 7104391
Alignment:
Q  272 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcaccgagtctgtctt 369  Q
    |||||| ||||||| ||| ||||||||||| |||||||| | |||||||||||||||| |||| | |||||| || |  ||||||| |||||||||||    
T  7104294 tcttgtagacaaaacgcatgtttgaacggcttgtttggtatgcaaagaggagagtatgcgaagaagaacacagtccggcaaatcactgagtctgtctt 7104391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 376
Target Start/End: Complemental strand, 4149667 - 4149545
Alignment:
Q  258 cttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaa 353  Q
    ||||||||||||||||    | |||||||||| ||| ||||||||||| | |||||||||||||   || |||||| ||||||| |||||||  | ||||    
T  4149667 cttccagagattcttccatctcgtggacaaaacgcaggtttgaacggcctctttggtgttcaaaatcgacagtatgagaagtaacacacaattcggtaaa 4149568  T
Q  354 tcaccgagtctgtcttgattttc 376  Q
    |||| || |||||||| ||||||    
T  4149567 tcactgattctgtcttcattttc 4149545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 376
Target Start/End: Complemental strand, 4165439 - 4165317
Alignment:
Q  258 cttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaa 353  Q
    ||||||||||||||||    | |||||||||| ||| ||||||||||| | |||||||||||||   || |||||| ||||||| |||||||  | ||||    
T  4165439 cttccagagattcttccatctcgtggacaaaacgcaggtttgaacggcctctttggtgttcaaaatcgacagtatgagaagtaacacacaattcggtaaa 4165340  T
Q  354 tcaccgagtctgtcttgattttc 376  Q
    |||| || |||||||| ||||||    
T  4165339 tcactgattctgtcttcattttc 4165317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 369
Target Start/End: Original strand, 2996512 - 2996599
Alignment:
Q  282 aaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcaccgagtctgtctt 369  Q
    ||||||||||||||||| || | ||| ||||||||| | || ||||||||||| | ||||||||||| ||| |||| ||| |||||||    
T  2996512 aaaatgcaagtttgaactgcatcttttgtgttcaaaaatgaaagtatgtgaaggataacacaatcagttaagtcactgagcctgtctt 2996599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 346
Target Start/End: Complemental strand, 7178005 - 7177938
Alignment:
Q  279 gacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatc 346  Q
    |||||||  ||||||||||  |||| ||||||||||||| ||||| |||||||||||| |||||||||    
T  7178005 gacaaaacacaagtttgaaaagcgtatttggtgttcaaaaaggagtgtatgtgaagtagaacacaatc 7177938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 357
Target Start/End: Complemental strand, 476101 - 476016
Alignment:
Q  272 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcac 357  Q
    |||| |||| ||||| |||||||||||||| | ||||| ||| ||| |||||||| ||||||| | || |||||| ||||||||||    
T  476101 tcttttggataaaatacaagtttgaacggcttctttggcgtttaaaaaggagagtgtgtgaaggagaatacaatctgataaatcac 476016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 25601769 - 25601731
Alignment:
Q  272 tcttgtggacaaaatgcaagtttgaacggcgtgtttggt 310  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  25601769 tcttgtggacaaaatgcaagtttgaacagcatgtttggt 25601731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 357
Target Start/End: Complemental strand, 7126021 - 7125904
Alignment:
Q  243 aagggatggaagacgcttccagagattct----tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaa 338  Q
    ||||| ||||||||| |||||||||||||    |||| ||||||| || |||||||||| |||  |||| || | |||||| |||||||| ||||| | |    
T  7126021 aagggttggaagacgtttccagagattcttccatcttttggacaagatacaagtttgaatggctagtttagtatccaaaga-gagagtatttgaagaaga 7125923  T
Q  339 acacaatcagataaatcac 357  Q
    |||||||| | ||||||||    
T  7125922 acacaatcgggtaaatcac 7125904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 369
Target Start/End: Complemental strand, 7177898 - 7177801
Alignment:
Q  272 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcaccgagtctgtctt 369  Q
    |||| ||||||  |||||||||||||   | ||||||||||||||| ||||||||||||  || | || |||||||| |||||| | |||||| ||||    
T  7177898 tcttatggacagtatgcaagtttgaataacctgtttggtgttcaaaaaggagagtatgtacagaagaatacaatcaggtaaatcgctgagtctatctt 7177801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 357
Target Start/End: Original strand, 14288925 - 14288997
Alignment:
Q  285 atgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcac 357  Q
    ||||||||||||||||||| |||||| |||||| | || |  |||||||||||||| ||||||| ||||||||    
T  14288925 atgcaagtttgaacggcgtatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcac 14288997  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 379
Target Start/End: Complemental strand, 3978162 - 3978055
Alignment:
Q  272 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcaccgagtctgtcttga 371  Q
    ||||||||| |||| |||||||||||| ||||| |||||||| ||| | |||||||||||||| | ||  |  |||| ||| || | ||||||||||| |    
T  3978162 tcttgtggataaaacgcaagtttgaaccgcgtggttggtgtttaaaaacgagagtatgtgaagaataatgctttcaggtaagtcgctgagtctgtcttca 3978063  T
Q  372 ttttcgct 379  Q
    ||||||||    
T  3978062 ttttcgct 3978055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 309
Target Start/End: Complemental strand, 29676539 - 29676507
Alignment:
Q  277 tggacaaaatgcaagtttgaacggcgtgtttgg 309  Q
    ||||||||||||||||||||||| |||||||||    
T  29676539 tggacaaaatgcaagtttgaacgacgtgtttgg 29676507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 348
Target Start/End: Complemental strand, 52186889 - 52186813
Alignment:
Q  272 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcag 348  Q
    |||| ||||||||||||| ||||||||||| ||||| | ||||| | ||||||||| ||| || | |||| ||||||    
T  52186889 tcttttggacaaaatgcaggtttgaacggcctgttttgcgttcagaaaggagagtaggtggaggagaacagaatcag 52186813  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 348
Target Start/End: Complemental strand, 25064313 - 25064237
Alignment:
Q  272 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcag 348  Q
    ||||| |||||| ||||| ||||| || || ||||||||||  | | |||||||||||||||||| |||||||||||    
T  25064313 tcttggggacaatatgcatgtttggactgcatgtttggtgtctagaaaggagagtatgtgaagtagaacacaatcag 25064237  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 376
Target Start/End: Original strand, 38142201 - 38142266
Alignment:
Q  311 gttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcaccgagtctgtcttgattttc 376  Q
    ||||||| |||||||||||||||| | |||||| |||| ||| || | ||||||||||| ||||||    
T  38142201 gttcaaaaaggagagtatgtgaaggataacacagtcaggtaagtcgctgagtctgtcttcattttc 38142266  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 7022097 - 7022045
Alignment:
Q  305 tttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcac 357  Q
    |||||||| |||| |||||||||||||||||| || ||||| || ||||||||    
T  7022097 tttggtgtccaaaaaggagagtatgtgaagtacaagacaattaggtaaatcac 7022045  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 333
Target Start/End: Original strand, 43864075 - 43864136
Alignment:
Q  272 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaa 333  Q
    |||| ||||||||||||||||||||||||| | ||| |  |||||| |||| ||||||||||    
T  43864075 tcttttggacaaaatgcaagtttgaacggccttttttgcattcaaaaaggacagtatgtgaa 43864136  T

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Target: scaffold0896 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 317
Target Start/End: Complemental strand, 1543 - 1474
Alignment:
Q  252 aagacgcttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaa 317  Q
    ||||||||||||||||||||||    || ||| |||||  ||||||||||| |||| |||||||||||||    
T  1543 aagacgcttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaa 1474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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