View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0619_high_10 (Length: 410)
Name: NF0619_high_10
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0619_high_10 |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 30 - 352
Target Start/End: Complemental strand, 47649320 - 47648998
Alignment:
| Q |
30 |
gtatcggtggacaattttgtagtgcacttaatataatgtccgagcttgctcacaaggataataacaccacttcagagaaattgtaagtaatttttcttga |
129 |
Q |
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| T |
47649320 |
gtatcggtggacaattttgtagtgcacttaatataatgtccgagcgtgctcacaaggataataacaccacttcagagaaattgtaagtaatttttcttga |
47649221 |
T |
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| Q |
130 |
catttagcatacaattttgtccaaattttatttcgagttgagatggattcgtggagacacgacttgatgcatttgtgaggatattatgattgagaatttg |
229 |
Q |
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| T |
47649220 |
catttagcatacaattttgtccaaattttatttcgagttgagatggattcgtggagacacgacttgatgcatttgtgaggatattatgattgagaatttg |
47649121 |
T |
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| Q |
230 |
ttttagcaattcgtttttgtgctttactgtgatgttgattttggtgtggtagtgattactgttatggtgcaattggttaataatatatgcaattggtgtg |
329 |
Q |
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| T |
47649120 |
ttttagcaattcgtttttgtgctttactgtgatgttgattttggtgtggtagtgattactgttatggtgcaattggttaataatatatgcaattggtgtg |
47649021 |
T |
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| Q |
330 |
gctgtgttagcgtttgcacgcct |
352 |
Q |
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| T |
47649020 |
gctgtgtaagcgtttgcacgcct |
47648998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 54 - 306
Target Start/End: Complemental strand, 30753404 - 30753152
Alignment:
| Q |
54 |
cacttaatataatgtccgagcttgctcacaaggataataacaccacttcagagaaattgtaagtaatttttcttgacatttagcatacaattttgtccaa |
153 |
Q |
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| T |
30753404 |
cacttaagataatgtctgaacttgttcataaggataataacacgacttcagagaaattggaagtaatttttcttgacttttagaatacaattttgtctaa |
30753305 |
T |
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| Q |
154 |
attttatttcgagttgagatggattcgtggagacacgacttgatgcatttgtgaggatattatgattgagaatttgttttagcaattcgtttttgtgc-t |
252 |
Q |
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| T |
30753304 |
attttattttgaattgagatggcttgatggagaaacgacttgctgcgtttgtgaggatattctaattgagaatttgtttttgc-attagtttgtgtgctt |
30753206 |
T |
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| Q |
253 |
ttactgtgatgttgattttggtgtggtagtgattactgttatggtgcaattggt |
306 |
Q |
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| T |
30753205 |
ttactttgatgttgattttggtgtggtaatgtttagtgttatggtgcaattggt |
30753152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 91508 - 91410
Alignment:
| Q |
30 |
gtatcggtggacaattttgtagtgcacttaatataatgtccgagcttgctcacaaggataataacaccacttcagagaaattgtaagtaatttttcttga |
129 |
Q |
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| T |
91508 |
gtatcggtggacaattttctagtgcacttaatataatgtatgaacttgttcacaaggataataacatgactcc--agaaattgtaagcaatttttcttga |
91411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 36518168 - 36518223
Alignment:
| Q |
150 |
ccaaattttatttcgagttgagatggattcgtggagacacgacttgatgcatttgt |
205 |
Q |
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| T |
36518168 |
ccaaattttatttggagttgagatggattggtggagacatggtttaatgcatttgt |
36518223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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