View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0619_high_16 (Length: 340)
Name: NF0619_high_16
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0619_high_16 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 3069893 - 3069554
Alignment:
| Q |
1 |
tttggagaaattggtaaacattgctgtttggtgtgttcaagaggatccatgtcttagatcaaccatgagaaatgtggtacatatgcttgaaggtactgtt |
100 |
Q |
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| T |
3069893 |
tttggagaaattggtaaagattgctatttggtgtgttcaagaggatgcatgtcttagatcaaccatgagaaatgtgatacatatgcttgaaggtactgtt |
3069794 |
T |
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| Q |
101 |
gaagtgcaagctccgttaaacccctcaccatttagtattcaatattctctaaattaataagttgctaagcaaggggttcagcttgtgcttatccttgttt |
200 |
Q |
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| T |
3069793 |
gaagtgcaagctccgttaaacccctcaccgtttagtattcaatattctctaaattaataagttgctaagcaaggggttcagcttgtgcttatccttgttt |
3069694 |
T |
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| Q |
201 |
cgctgttttaagcatactgtgatattgcttttatgtctgtgtatcaagctgtggttttatgttccttcaagagtagttgtgttgtgtacccgtgtatatg |
300 |
Q |
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| T |
3069693 |
cgctgttttaagcatactgtgatattgcttttatgtctgtgtatcaagctgtggttttatgttccttcaagagtagttgtgttttgtacccgtgtatatg |
3069594 |
T |
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| Q |
301 |
ggtgcgactgtagtttctatatctaatatctatatctaca |
340 |
Q |
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| T |
3069593 |
ggtgcgactgtagtttctatatctaatatctatatctaca |
3069554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 3036151 - 3036314
Alignment:
| Q |
1 |
tttggagaaattggtaaacattgctgtttggtgtgttcaagaggatccatgtcttagatcaaccatgagaaatgtggtacatatgcttgaaggtactgtt |
100 |
Q |
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| T |
3036151 |
tttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatgtcttagaccaaccatgagaaatgtggtacatatgcttgaaggtactgtt |
3036250 |
T |
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| Q |
101 |
gaagtgcaagctccgttaaacccctcaccatttagtattcaatattctctaaattaataagttg |
164 |
Q |
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| T |
3036251 |
gaagtgcaagttccaccatacccctcaccaattagtattcaatattctctaaattaataagttg |
3036314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 3057019 - 3057180
Alignment:
| Q |
1 |
tttggagaaattggtaaacattgctgtttggtgtgttcaagaggatccatgtcttagatcaaccatgagaaatgtggtacatatgcttgaaggtactgtt |
100 |
Q |
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| T |
3057019 |
tttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatatcttagaccaaacatgagagatgtggtacatatgcttgaaggtactgtt |
3057118 |
T |
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| Q |
101 |
gaagtgcaagctccgttaaacccctcaccatttagtattcaatattctctaaattaataagt |
162 |
Q |
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| T |
3057119 |
gaagtgcaagttccaccatacccctcacaaattagtattcaatattctctaaattaataagt |
3057180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 3048932 - 3048840
Alignment:
| Q |
1 |
tttggagaaattggtaaacattgctgtttggtgtgttcaagaggatccatgtcttagatcaaccatgagaaatgtggtacatatgcttgaagg |
93 |
Q |
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| T |
3048932 |
tttggagaaattggtaaagattgctatttggtgtgttcaagaggatccatatcttagaccaaccatgagaaatgtgatacatatgcttgaagg |
3048840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 282
Target Start/End: Complemental strand, 3048436 - 3048235
Alignment:
| Q |
84 |
tgcttgaaggtactgttgaagtgcaagctccgt--taaacccctcaccatttagtattcaatattctctaaattaataagttgctaagcaaggggttcag |
181 |
Q |
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||||||||||||||||||||||||||| ||| || |||| |||||| |||||||| |||||||||||||||||||| || |||| ||| ||| |
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| T |
3048436 |
tgcttgaaggtactgttgaagtgcaagttccaccatacacccttcaccaattagtattgaatattctctaaattaataactttgtaaggaagattggcag |
3048337 |
T |
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| Q |
182 |
cttgtgcttatccttgtttcgctgttttaagcatactgtgatatt-gcttttatgtctgtgtatcaagctgtggttttatgttccttcaagagtagttgt |
280 |
Q |
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| T |
3048336 |
cttgtgctaattcttattatgttgttgcaagtgtactgtaatatttgcttttatgtgtgtgtatcaacctgtagttttatgtaccttcaagactagtagt |
3048237 |
T |
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| Q |
281 |
gt |
282 |
Q |
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|| |
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| T |
3048236 |
gt |
3048235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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