View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0619_high_21 (Length: 309)

Name: NF0619_high_21
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0619_high_21
NF0619_high_21
[»] chr2 (32 HSPs)
chr2 (1-195)||(39458447-39458641)
chr2 (30-131)||(39473988-39474089)
chr2 (25-131)||(39136541-39136647)
chr2 (34-131)||(39152158-39152255)
chr2 (34-131)||(39416084-39416181)
chr2 (30-93)||(39415192-39415255)
chr2 (30-86)||(39390639-39390695)
chr2 (34-90)||(39422204-39422260)
chr2 (120-173)||(39390633-39390686)
chr2 (139-192)||(39474055-39474108)
chr2 (34-99)||(38792654-38792719)
chr2 (1-78)||(39389938-39390015)
chr2 (30-131)||(39487902-39488003)
chr2 (30-78)||(39415576-39415624)
chr2 (31-79)||(39467650-39467698)
chr2 (35-74)||(38792931-38792970)
chr2 (139-190)||(39152141-39152192)
chr2 (139-182)||(39416147-39416190)
chr2 (139-193)||(38792342-38792395)
chr2 (1-79)||(39192989-39193067)
chr2 (1-79)||(39198669-39198747)
chr2 (111-173)||(39222765-39222827)
chr2 (139-192)||(39136522-39136575)
chr2 (30-79)||(39161624-39161673)
chr2 (30-79)||(39207521-39207570)
chr2 (30-79)||(39389400-39389449)
chr2 (111-148)||(39390708-39390745)
chr2 (111-171)||(39215514-39215574)
chr2 (30-74)||(39389799-39389843)
chr2 (111-147)||(39390792-39390828)
chr2 (31-79)||(39398533-39398581)
chr2 (30-70)||(39415108-39415148)
[»] chr5 (3 HSPs)
chr5 (38-192)||(17059082-17059224)
chr5 (30-79)||(33560745-33560794)
chr5 (110-146)||(33560228-33560264)
[»] chr7 (2 HSPs)
chr7 (25-131)||(19806902-19807008)
chr7 (139-195)||(19806880-19806936)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 39458641 - 39458447
Alignment:
Q  1 tccttcacctgctcttcaaaatctctcttttttgactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39458641 tccttcacctgctcttcaaaatctctcttttttgactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctcct 39458542  T
Q  101 tcgcctggatttcaaattccttctcttttgattcaaaatccttcacttgtctttcaaaatgcttctgttttgaaatgttatccttgacttgatga 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39458541 tcgcctggatttcaaattccttctcttttgattcaaaatccttcacttgtctttcaaaatgcttctgttttgaaatgttatccttgacttgatga 39458447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 39473988 - 39474089
Alignment:
Q  30 ttttgactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctccttcgcctggatttcaaattccttctctttt 129  Q
    |||||||| ||||| || ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| | ||| ||||||||||||||| ||||    
T  39473988 ttttgacttaagcttctccatgcggctttcaaaatgcttctgttttgataccaaatcattcactagctccttcacttggctttcaaattccttctgtttt 39474087  T
Q  130 ga 131  Q
    ||    
T  39474088 ga 39474089  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 39136647 - 39136541
Alignment:
Q  25 ctcttttttgactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctccttcgcctggatttcaaattccttct 124  Q
    |||| ||| |||||||||||||| ||  ||||||||||||||||||||||||||| |||||||||||| ||||||||| | ||| |||| |||||||| |    
T  39136647 ctctctttcgactcaagctccttaatatggctttcgaaatgcttctgttttgataccaaatcattcaccagctccttcacttggctttccaattcctttt 39136548  T
Q  125 cttttga 131  Q
     ||||||    
T  39136547 gttttga 39136541  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 39152255 - 39152158
Alignment:
Q  34 gactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctccttcgcctggatttcaaattccttctcttttga 131  Q
    |||||||| ||||| || |||||||| |||||||||||||| |||| |||||||||||| ||||||||  | ||| ||||||||||||||| ||||||    
T  39152255 gactcaagttccttaatccggctttcaaaatgcttctgtttggataccaaatcattcaccagctcctttacttggctttcaaattccttctgttttga 39152158  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 39416084 - 39416181
Alignment:
Q  34 gactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctccttcgcctggatttcaaattccttctcttttga 131  Q
    ||||||||||||||||| ||||||| | ||||| | |||| ||||| |||||||||| ||||||||||| | ||| ||||||||||||||| ||||||    
T  39416084 gactcaagctccttcatgcggcttttgtaatgcatgtgttctgataccaaatcattccctagctccttcacttggctttcaaattccttctgttttga 39416181  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 39415192 - 39415255
Alignment:
Q  30 ttttgactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcact 93  Q
    |||||||||||||||||||||||||||||| ||||| ||| ||||||||| |||||||||||||    
T  39415192 ttttgactcaagctccttcattcggctttcaaaatgattcagttttgataccaaatcattcact 39415255  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 39390639 - 39390695
Alignment:
Q  30 ttttgactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatc 86  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||||||| ||||||    
T  39390639 ttttgactcaaactccttcatttggctttcaaaatgcttctgttttgatagcaaatc 39390695  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 39422204 - 39422260
Alignment:
Q  34 gactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattc 90  Q
    |||||||| ||||||||||||||||| || |||||||||||||||| ||||||||||    
T  39422204 gactcaaggtccttcattcggctttcaaattgcttctgttttgataccaaatcattc 39422260  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 39390633 - 39390686
Alignment:
Q  120 cttctcttttgattcaaaatccttcacttgtctttcaaaatgcttctgttttga 173  Q
    |||||||||||| ||||| ||||||| ||| |||||||||||||||||||||||    
T  39390633 cttctcttttgactcaaactccttcatttggctttcaaaatgcttctgttttga 39390686  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 39474055 - 39474108
Alignment:
Q  139 tccttcacttgtctttcaaaatgcttctgttttgaaatgttatccttgacttga 192  Q
    ||||||||||| |||||||| | |||||||||||||||||||||| ||||||||    
T  39474055 tccttcacttggctttcaaattccttctgttttgaaatgttatccatgacttga 39474108  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 38792719 - 38792654
Alignment:
Q  34 gactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctcc 99  Q
    |||||||| |||||||||||| |||||||| ||||||||||  |||  ||||||||||| ||||||    
T  38792719 gactcaaggtccttcattcggttttcgaaaagcttctgtttcaatacaaaatcattcaccagctcc 38792654  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 39389938 - 39390015
Alignment:
Q  1 tccttcacctgctcttcaaaatctctcttttttgactcaagctccttcattcggctttcgaaatgcttctgttttgat 78  Q
    |||||||| ||  ||||||| | ||||| |||||| ||||||||| |||||||| |||| |||| |||||||||||||    
T  39389938 tccttcacttggccttcaaactttctctcttttgaatcaagctccctcattcggttttcaaaatccttctgttttgat 39390015  T

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Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 39487902 - 39488003
Alignment:
Q  30 ttttgactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctccttcgcctggatttcaaattccttctctttt 129  Q
    ||||||||||| ||| ||| ||||| |||| ||||| || ||| |  ||| |||||||||||| |||||||||  |||| ||||||||| ||||| ||||    
T  39487902 ttttgactcaatctcattcgttcggttttcaaaatggttatgtctgaataacaaatcattcaccagctccttcatctggctttcaaatttcttctgtttt 39488001  T
Q  130 ga 131  Q
    ||    
T  39488002 ga 39488003  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 39415576 - 39415624
Alignment:
Q  30 ttttgactcaagctccttcattcggctttcgaaatgcttctgttttgat 78  Q
    ||||| |||||||||||||||||  |||| |||||||||||||||||||    
T  39415576 ttttgcctcaagctccttcattctccttttgaaatgcttctgttttgat 39415624  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 39467698 - 39467650
Alignment:
Q  31 tttgactcaagctccttcattcggctttcgaaatgcttctgttttgata 79  Q
    |||||||| | |||||||| ||||||||| |||||||||||||||||||    
T  39467698 tttgactctaactccttcaatcggctttcaaaatgcttctgttttgata 39467650  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 38792970 - 38792931
Alignment:
Q  35 actcaagctccttcattcggctttcgaaatgcttctgttt 74  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  38792970 actcaagttccttcatttggctttcgaaatgcttctgttt 38792931  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 39152192 - 39152141
Alignment:
Q  139 tccttcacttgtctttcaaaatgcttctgttttgaaatgttatccttgactt 190  Q
    ||||| ||||| |||||||| | |||||||||||||||||||||| ||||||    
T  39152192 tcctttacttggctttcaaattccttctgttttgaaatgttatccatgactt 39152141  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 39416147 - 39416190
Alignment:
Q  139 tccttcacttgtctttcaaaatgcttctgttttgaaatgttatc 182  Q
    ||||||||||| |||||||| | |||||||||||||||||||||    
T  39416147 tccttcacttggctttcaaattccttctgttttgaaatgttatc 39416190  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 38792395 - 38792342
Alignment:
Q  139 tccttcacttgtctttcaaaatgcttctgttttgaaatgttatccttgacttgat 193  Q
    ||||||||||| ||||| ||||||||||| |||||||||| |||| |||||||||    
T  38792395 tccttcacttggctttccaaatgcttctg-tttgaaatgtcatccatgacttgat 38792342  T

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Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 39192989 - 39193067
Alignment:
Q  1 tccttcacctgctcttcaaaatctctcttttttgactcaagctccttcattcggctttcgaaatgcttctgttttgata 79  Q
    ||||||||| | |||||||| | | ||| |||| | ||||| |||||||| ||| |||||||||||| |||||||||||    
T  39192989 tccttcacccgatcttcaaattttttctcttttaattcaagatccttcatccggttttcgaaatgctcctgttttgata 39193067  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 39198669 - 39198747
Alignment:
Q  1 tccttcacctgctcttcaaaatctctcttttttgactcaagctccttcattcggctttcgaaatgcttctgttttgata 79  Q
    ||||||||| | |||||||| | | ||| |||| | ||||| |||||||| ||| |||||||||||| |||||||||||    
T  39198669 tccttcacccgatcttcaaattttttctcttttaattcaagatccttcatccggttttcgaaatgctcctgttttgata 39198747  T

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Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 39222827 - 39222765
Alignment:
Q  111 ttcaaattccttctcttttgattcaaaatccttcacttgtctttcaaaatgcttctgttttga 173  Q
    |||||||| |||||||||||||| ||| ||||  ||||| ||||| |||||||||| ||||||    
T  39222827 ttcaaattgcttctcttttgatttaaactcctcgacttggctttcgaaatgcttcttttttga 39222765  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 39136575 - 39136522
Alignment:
Q  139 tccttcacttgtctttcaaaatgcttctgttttgaaatgttatccttgacttga 192  Q
    ||||||||||| ||||| || | ||| |||||||||||||||||| ||||||||    
T  39136575 tccttcacttggctttccaattccttttgttttgaaatgttatccatgacttga 39136522  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 39161673 - 39161624
Alignment:
Q  30 ttttgactcaagctccttcattcggctttcgaaatgcttctgttttgata 79  Q
    ||||||||||||||||| |||| || |||||| |||||||| ||||||||    
T  39161673 ttttgactcaagctcctacatttggttttcgacatgcttctcttttgata 39161624  T

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Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 39207521 - 39207570
Alignment:
Q  30 ttttgactcaagctccttcattcggctttcgaaatgcttctgttttgata 79  Q
    ||||||||||||||||| |||| || |||||| |||||||| ||||||||    
T  39207521 ttttgactcaagctcctacatttggttttcgacatgcttctcttttgata 39207570  T

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Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 39389400 - 39389449
Alignment:
Q  30 ttttgactcaagctccttcattcggctttcgaaatgcttctgttttgata 79  Q
    |||||||||||||||||||||| || |||||| | ||||||| |||||||    
T  39389400 ttttgactcaagctccttcatttggttttcgatacgcttctgatttgata 39389449  T

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Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 39390708 - 39390745
Alignment:
Q  111 ttcaaattccttctcttttgattcaaaatccttcactt 148  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  39390708 ttcaaattccttctcttttgattcaaactcctttactt 39390745  T

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Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 39215574 - 39215514
Alignment:
Q  111 ttcaaattccttctcttttgattcaaaatccttcacttgtctttcaaaatgcttctgtttt 171  Q
    |||||||| ||||||||||||||||||   ||  |||||||||||||| ||||||| ||||    
T  39215574 ttcaaattgcttctcttttgattcaaagctctcaacttgtctttcaaattgcttctttttt 39215514  T

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Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 39389799 - 39389843
Alignment:
Q  30 ttttgactcaagctccttcattcggctttcgaaatgcttctgttt 74  Q
    |||||||||||||||||||||| ||||||   |||||||||||||    
T  39389799 ttttgactcaagctccttcatttggcttttataatgcttctgttt 39389843  T

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Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 39390792 - 39390828
Alignment:
Q  111 ttcaaattccttctcttttgattcaaaatccttcact 147  Q
    |||||||||||||| |||||||||||| |||||||||    
T  39390792 ttcaaattccttcttttttgattcaaattccttcact 39390828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 39398533 - 39398581
Alignment:
Q  31 tttgactcaagctccttcattcggctttcgaaatgcttctgttttgata 79  Q
    |||||||| | |||||||| |||| |||| |||||||||||||||||||    
T  39398533 tttgactctaactccttcaatcggatttcaaaatgcttctgttttgata 39398581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 39415108 - 39415148
Alignment:
Q  30 ttttgactcaagctccttcattcggctttcgaaatgcttct 70  Q
    |||||| ||||||||||||| | ||||||||||||||||||    
T  39415108 ttttgattcaagctccttcagttggctttcgaaatgcttct 39415148  T

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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 38 - 192
Target Start/End: Complemental strand, 17059224 - 17059082
Alignment:
Q  38 caagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctccttcgcctggatttcaaattccttctcttttgattcaaa 137  Q
    ||||||||||||||||||||||||||||||| ||  |||||| |||||| ||||||            |||||||||||||||||||||| |||||||||    
T  17059224 caagctccttcattcggctttcgaaatgcttatgaattgataccaaatccttcact------------tggatttcaaattccttctcttgtgattcaaa 17059137  T
Q  138 atccttcacttgtctttcaaaatgcttctgttttgaaatgttatccttgacttga 192  Q
     | ||||| ||  ||||||||||||||||||||||||||||||||| ||||||||    
T  17059136 cttcttcaatttgctttcaaaatgcttctgttttgaaatgttatccatgacttga 17059082  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 33560794 - 33560745
Alignment:
Q  30 ttttgactcaagctccttcattcggctttcgaaatgcttctgttttgata 79  Q
    ||||||||| |||||||||||| || |||||| |||||||||||||||||    
T  33560794 ttttgactcgagctccttcatttggttttcgacatgcttctgttttgata 33560745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 33560264 - 33560228
Alignment:
Q  110 tttcaaattccttctcttttgattcaaaatccttcac 146  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  33560264 tttcaaaatccttctcttttgattcaaactccttcac 33560228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 19807008 - 19806902
Alignment:
Q  25 ctcttttttgactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctccttcgcctggatttcaaattccttct 124  Q
    |||| ||| |||||||||||||| ||  ||||||||||||||||||||||||||| |||||||||||  ||||||||| | ||| |||| |||||||| |    
T  19807008 ctctctttcgactcaagctccttaatatggctttcgaaatgcttctgttttgataccaaatcattcatcagctccttcacgtggctttccaattcctttt 19806909  T
Q  125 cttttga 131  Q
     ||||||    
T  19806908 gttttga 19806902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 19806936 - 19806880
Alignment:
Q  139 tccttcacttgtctttcaaaatgcttctgttttgaaatgttatccttgacttgatga 195  Q
    |||||||| || ||||| || | ||| |||||||||||||||||| |||||||||||    
T  19806936 tccttcacgtggctttccaattccttttgttttgaaatgttatccatgacttgatga 19806880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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