View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0619_high_30 (Length: 274)
Name: NF0619_high_30
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0619_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 106 - 245
Target Start/End: Original strand, 41668085 - 41668224
Alignment:
| Q |
106 |
cgaaattatttgattccaggatcacagnnnnnnncattttttccatttatgatacacacggctacatgaattgttcaactactacgacttttctgttatg |
205 |
Q |
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| T |
41668085 |
cgaaattatttgattccaggatcacagaaaaaaacattttttccatttatgatacacacggctacatgaattgttcaactactacgacttttctgttatg |
41668184 |
T |
|
| Q |
206 |
agtagtaaccttcaacccaaatcttgcccaacattgtgcc |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
41668185 |
agtagtaaccttcaacccaaatcttgcccaacattgtgcc |
41668224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 41667976 - 41668009
Alignment:
| Q |
1 |
tttggtagggattttacgttgaagcctcgtgaat |
34 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
41667976 |
tttggtagggattttacgttgaagcctcgtgaat |
41668009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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