View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0619_high_35 (Length: 258)
Name: NF0619_high_35
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0619_high_35 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 30 - 258
Target Start/End: Original strand, 34582991 - 34583222
Alignment:
| Q |
30 |
gctattattaattctgacatgatcttgaatgattccatgtcagactgtttcatttggaatcataacttagattgaatatataatgcttctttagatatgg |
129 |
Q |
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| T |
34582991 |
gctattattaattctgacatgatcttgaatgattccatgtcagactgtttcatttggaatcataacttagattgaatatataatgcttctttagatatgg |
34583090 |
T |
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| Q |
130 |
aagttgaaagctcatgagaatattaaatttttcatttggtgtgcttgccaccatgttgttcctactcttg---ttgttgaaaaataggaacatgaccact |
226 |
Q |
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| T |
34583091 |
aagttgaaagctcatgagaatattaaatttttcatttagtgtgcttgccaccatgttgttcctactcttgtttttgttgaaaaataggaacatgaccact |
34583190 |
T |
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| Q |
227 |
tctaacttatgttctagatgtcaaagtagtga |
258 |
Q |
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| T |
34583191 |
tctaacttatgttctagatgtcaaagtagtga |
34583222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 11362041 - 11362127
Alignment:
| Q |
165 |
ttggtgtgcttgccaccatgttgttcctactcttg--ttgttgaaaaataggaacatgaccacttctaacttatgttctagatgtca |
249 |
Q |
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| T |
11362041 |
ttggtgtgcttgccaccatgttattcctactcctggtttgttgaaaaatatgaacatgactacttctaacttatgtgctacatgtca |
11362127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 118 - 196
Target Start/End: Complemental strand, 13754548 - 13754470
Alignment:
| Q |
118 |
ctttagatatggaagttgaaagctcatgagaatattaaatttttcatttggtgtgcttgccaccatgttgttcctactc |
196 |
Q |
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| T |
13754548 |
ctttggatatggaagttgagagcatctgagaatattaaatttttcatttggtgtgcttgtcaccatgttattcctactc |
13754470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 13753760 - 13753687
Alignment:
| Q |
186 |
tgttcctactcttgtt--gttgaaaaataggaacatgaccacttctaacttatgttctagatgtcaaagtagtga |
258 |
Q |
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| T |
13753760 |
tgttcctactcttgttttgttgaaaa-taggaacatgtccacttctaacttatgttctagatgtcaaactagtga |
13753687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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