View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0619_high_44 (Length: 239)
Name: NF0619_high_44
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0619_high_44 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 6 - 221
Target Start/End: Original strand, 25376973 - 25377188
Alignment:
| Q |
6 |
cgagtgagatgaacatgagaaagtgttgtaggtttgatttggtgttgatggactatgataagatttggtggaaccatttaatttgagggttnnnnnnnca |
105 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
25376973 |
cgagagagaagaacatgagaaagtgttgtagatttaatttggtgttgatggactatgataagatttggtggaaccatctaatttgagggttaaaaaaaca |
25377072 |
T |
|
| Q |
106 |
agtacatgttggaccaattttttcataggtccaaattatactcaaccccacataataagcataagaaactttgagcttgttacatgccattaagtgggtg |
205 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25377073 |
agtatatgttggaccaatttttccataggtccaaattatactcaaccccacgtaataagtataagaaactttgagcttgttacatgccattaagtgggtg |
25377172 |
T |
|
| Q |
206 |
caatgcatgatctaat |
221 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
25377173 |
caatgcatgatctaat |
25377188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 41422426 - 41422285
Alignment:
| Q |
11 |
gagatgaacatgagaaagtgttgtaggtttgatttggtgttgatggactatgataagatttggtggaaccatttaatttgagggttnnnnnnncaagtac |
110 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| || || | |
|
|
| T |
41422426 |
gagaagaacatgagaaagtattgtaggtttgatttggtgttgatggactataataagatttggtggaaccatctaatttgagggttaaaaaaacaggttc |
41422327 |
T |
|
| Q |
111 |
atgttggaccaattttttcataggtccaaattatactcaacc |
152 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||| |||| |
|
|
| T |
41422326 |
atgttggaccaatttttccatagatccaaattatactgaacc |
41422285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 24994745 - 24994686
Alignment:
| Q |
36 |
ggtttgatttggtgttgatggactatgataagatttggtggaaccatttaatttgagggt |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || | | |||||||||||| |
|
|
| T |
24994745 |
ggtttgatttggtgttgatggactatgataagatttggtgcaatcttctaatttgagggt |
24994686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 21458413 - 21458359
Alignment:
| Q |
32 |
tgtaggtttgatttggtgttgatggactatgataagatttggtggaaccatttaat |
87 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||| |||||||||| |||| |
|
|
| T |
21458413 |
tgtaggtttgatttagtgttggtggactatgataagattt-gtggaaccatctaat |
21458359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1294 times since January 2019
Visitors: 3844