View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0619_high_5 (Length: 486)
Name: NF0619_high_5
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0619_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 150 - 431
Target Start/End: Original strand, 17379766 - 17380050
Alignment:
| Q |
150 |
ctaaacaaaattaattattccataaaaaattatcagcagactaatataaccaaaaaacaatcaataacgcaagttaacattgtcttctaaggtggagaca |
249 |
Q |
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| T |
17379766 |
ctaaacaaaattaattattccataaaaaattatcatcagactaatataaccaaaaaacaatcaataacgcaagttaacattgtcttctaaggtatagaga |
17379865 |
T |
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| Q |
250 |
gattaatagtccggtcaagccaaatgctcaaaaccaaaccacataggaaaattaatatttcacacaggtt-aaaatgctgcagattgtcccaaacttcaa |
348 |
Q |
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| T |
17379866 |
gattaatagtctgatcaagccaaatgctcaaaatcaaaccacataggaaaattaatatttcacacaggttaaaaatgctacagattggcccaaacttcaa |
17379965 |
T |
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| Q |
349 |
actcttaactttataaagattagtttgacacatcaatgggtagtttatactgnnnnnnnactc--tcttatcttctgagtatttt |
431 |
Q |
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| T |
17379966 |
actcttaactttataaagatttgtttgacacatcaatgggtagtttatgctgtttttttactcgatcttatcttctgagtatttt |
17380050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 175 - 300
Target Start/End: Original strand, 17395245 - 17395366
Alignment:
| Q |
175 |
aaaattatcagcagactaatataaccaaaaaacaatcaataacgcaagttaacattgtcttctaaggtggagacagattaatagtccggtcaagcc-aaa |
273 |
Q |
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| T |
17395245 |
aaaattattagcaaactaatataatcaaataacaatcaatagcgcaagttaacagtttcttctaaggtgg-gaca----aatagtccagtcaaaccaaaa |
17395339 |
T |
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| Q |
274 |
tgctcaaaaccaaaccacataggaaaa |
300 |
Q |
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| T |
17395340 |
tgttcaaaatcaaaccacataggaaaa |
17395366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 17398821 - 17398900
Alignment:
| Q |
103 |
ctcataatggggataacaaagagaaataaaagccttttctcatcatgctaaacaaaattaattattccataaaaaattat |
182 |
Q |
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| T |
17398821 |
ctcataattgagataacaaagagaaataagagctttttgccatcatgctaaacaaaagaaattattccacaaaaaattat |
17398900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 4816540 - 4816584
Alignment:
| Q |
116 |
taacaaagagaaataaaagccttttctcatcatgctaaacaaaat |
160 |
Q |
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| T |
4816540 |
taacaaagagaaataagagccttttggcatcatgctaaacaaaat |
4816584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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