View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0619_high_53 (Length: 208)

Name: NF0619_high_53
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0619_high_53
NF0619_high_53
[»] chr4 (2 HSPs)
chr4 (70-186)||(28258432-28258548)
chr4 (30-87)||(28258567-28258624)
[»] chr8 (2 HSPs)
chr8 (35-145)||(41205984-41206095)
chr8 (35-87)||(22215887-22215939)
[»] chr3 (3 HSPs)
chr3 (144-184)||(36545306-36545346)
chr3 (144-184)||(36562968-36563008)
chr3 (35-129)||(12121554-12121648)
[»] chr1 (1 HSPs)
chr1 (109-147)||(4639110-4639148)
[»] chr6 (1 HSPs)
chr6 (35-147)||(31258943-31259056)
[»] chr2 (1 HSPs)
chr2 (35-88)||(6433046-6433099)


Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 28258548 - 28258432
Alignment:
Q  70 aaaatttagtttatagttgattactcataacttgtaactgaaaatatagcttattaaaattacaatgtttgataaaatggctgatgaatataaaatgaca 169  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||| |||||||| ||||||| ||| | ||||||||||||||    
T  28258548 aaaatttagtttatagttaattactgataacttgtaactgaaaatatagcctattaaaattaaaatgtttggtaaaatgactggtaaatataaaatgaca 28258449  T
Q  170 tatttgtttatttttat 186  Q
    |||||||||||||||||    
T  28258448 tatttgtttatttttat 28258432  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 28258624 - 28258567
Alignment:
Q  30 gtgtgttggtaaaaataagttataagctggttgatagttgaaaatttagtttatagtt 87  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28258624 gtgtgttggtaaaaataagatataagctggttgatagttgaaaatttagtttatagtt 28258567  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 145
Target Start/End: Original strand, 41205984 - 41206095
Alignment:
Q  35 ttggtaaaaataagttataagctggttgatagttgaaaatttagtttatagttgattactcataacttgtaactgaaaata-tagcttattaaaattaca 133  Q
    |||||||||||||| ||||| ||  ||||| |||||||| ||||||||||||||||  || |||| || || | ||||| | ||| |||||| ||||| |    
T  41205984 ttggtaaaaataagctataaactaattgatggttgaaaagttagtttatagttgatggctgataatttatagcggaaaaaactagtttattagaattaaa 41206083  T
Q  134 atgtttgataaa 145  Q
    ||||||||||||    
T  41206084 atgtttgataaa 41206095  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 22215939 - 22215887
Alignment:
Q  35 ttggtaaaaataagttataagctggttgatagttgaaaatttagtttatagtt 87  Q
    |||||||||||||| |||||||| |||||||| |||||| |||| | ||||||    
T  22215939 ttggtaaaaataagctataagctagttgatagctgaaaagttagctgatagtt 22215887  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 36545346 - 36545306
Alignment:
Q  144 aaatggctgatgaatataaaatgacatatttgtttattttt 184  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  36545346 aaatgactgatgaatataaaatgacatgtttgtttattttt 36545306  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 36562968 - 36563008
Alignment:
Q  144 aaatggctgatgaatataaaatgacatatttgtttattttt 184  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  36562968 aaatgactgatgaatataaaatgacatgtttgtttattttt 36563008  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 12121554 - 12121648
Alignment:
Q  35 ttggtaaaaataagttataagctggttgatagttgaaaatttagtttatagttgattactcataacttgtaactgaaaatatagcttattaaaat 129  Q
    |||||||||||||| ||||||||   |||||| ||||||  ||| ||||||||||| ||| ||| ||| || |||||||  || |||||||||||    
T  12121554 ttggtaaaaataagctataagctaactgatagctgaaaagctagcttatagttgatgactgatagcttatagctgaaaagttaacttattaaaat 12121648  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 147
Target Start/End: Complemental strand, 4639148 - 4639110
Alignment:
Q  109 gaaaatatagcttattaaaattacaatgtttgataaaat 147  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  4639148 gaaaatatagtttattaaaattaaaatgtttgataaaat 4639110  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 31258943 - 31259056
Alignment:
Q  35 ttggtaaaaataagttataagctggttgatagttgaaaatttagtttatagttgattactcataacttgtaactgaaaatatagcttattaaaattacaa 134  Q
    |||||||||| ||| |||||| | |||||||||||||||  |||||||||| ||||  || ||| ||| || || ||||  ||||| |||||||||| ||    
T  31258943 ttggtaaaaaaaagctataagttagttgatagttgaaaagctagtttatagctgatggctgatagcttatagctaaaaagttagctgattaaaattaaaa 31259042  T
Q  135 -tgtttgataaaat 147  Q
     |||||| ||||||    
T  31259043 gtgtttggtaaaat 31259056  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 6433099 - 6433046
Alignment:
Q  35 ttggtaaaaataagttataagctggttgatagttgaaaatttagtttatagttg 88  Q
    |||| |||||| ||||||||||| | ||||||||||||| |||| |||||||||    
T  6433099 ttggcaaaaatgagttataagctagctgatagttgaaaagttagcttatagttg 6433046  T

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