View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0619_low_1 (Length: 1169)

Name: NF0619_low_1
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0619_low_1
NF0619_low_1
[»] chr3 (12 HSPs)
chr3 (85-461)||(33628238-33628614)
chr3 (311-595)||(33624556-33624844)
chr3 (85-338)||(33609753-33610006)
chr3 (616-863)||(33624884-33625136)
chr3 (85-310)||(33619035-33619260)
chr3 (85-307)||(33596326-33596548)
chr3 (85-191)||(33623851-33623957)
chr3 (85-309)||(33603457-33603681)
chr3 (85-307)||(33589154-33589376)
chr3 (706-752)||(33628610-33628656)
chr3 (85-215)||(33563573-33563703)
chr3 (814-863)||(1744783-1744832)
[»] chr5 (2 HSPs)
chr5 (432-528)||(12059786-12059882)
chr5 (439-558)||(12053055-12053171)
[»] chr4 (1 HSPs)
chr4 (939-999)||(36867638-36867698)


Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 85 - 461
Target Start/End: Original strand, 33628238 - 33628614
Alignment:
Q  85 tagctgttgctgtgcatttcataatgatatttgtgttatcgcaaacattcttgactatgttatgccacttgaagtttggggcatttttgttctatgctgg 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33628238 tagctgttgctgtgcatttcataatgatatttgtgttatcgcaaacattcttgactatgttatgccacttgaagtttggggcatttttgttctatgctgg 33628337  T
Q  185 ttgggttgttgtgatgactcttttcattatannnnnnnngccggagactaaaggaattgctttggattcaatgcacatcatatggggtaaacattggttt 284  Q
    |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33628338 ttgggttgttgtgatgactcttttcattatattttttttgccggagactaaaggaattgctttggattcaatgcacatcatatggggtaaacattggttt 33628437  T
Q  285 tggtatcggtttgttaaaggagaagacggagaaggaaatcatccatgaagtttgcatgcaaaattgaaagaaaaattattgatgtattttttgaaacatt 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33628438 tggtatcggtttgttaaaggagaagacggagaaggaaatcatccatgaagtttgcatgcaaaattgaaagaaaaattgttgatgtattttttgaaacatt 33628537  T
Q  385 atatgtactatttcttatatttgtactagattttttaaaattcagttttgtttagatttgataaaatctatcattca 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33628538 atatgtactatttcttatatttgtactagattttttaaaattcagttttgtttagatttgataaaatctataattca 33628614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 4e-72
Query Start/End: Original strand, 311 - 595
Target Start/End: Original strand, 33624556 - 33624844
Alignment:
Q  311 cggagaaggaaatcatccatgaagtttgcatgcaaaattgaaagaaaaat-tattgatgtattttttgaaacattatatgtactatttcttatatttgta 409  Q
    |||||||||||||| ||||||||||||| || ||||  |||||||||||  | ||||| |||| ||||||| | |||||  ||||||||||||||| ||     
T  33624556 cggagaaggaaatcgtccatgaagtttgtatacaaacatgaaagaaaaaaatgttgatatattctttgaaaaaatatat--actatttcttatattagtg 33624653  T
Q  410 ctagattttttaa-aattcagttttgtttagatttgataaaatctatcattcatagttgttaggagttcacttgtgttaaaagttagttaagaagtttgt 508  Q
    ||| ||||||| | || ||| | ||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  33624654 ctatattttttcagaagtcaatgttgcttagatttgatgaaatctataattcatagttgttaggagttcacttgtgttaaaggttagttaagaagtgtgt 33624753  T
Q  509 taataattgagagtttttagcaagttaattagcatgtgtgagtgtatat----ttaacaccacaatgcaataagaatgtaatcttcatgat 595  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    |||||||||||||||||| |||||| ||| ||||||||    
T  33624754 taataattgagagtttttagcaagttaattagaatgtgtgagtgtatataagcttaacaccacaatgcaattagaatgaaattttcatgat 33624844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 85 - 338
Target Start/End: Original strand, 33609753 - 33610006
Alignment:
Q  85 tagctgttgctgtgcatttcataatgatatttgtgttatcgcaaacattcttgactatgttatgccacttgaagtttggggcatttttgttctatgctgg 184  Q
    ||||| ||||| | || ||||||||  |||||||| |||| |||||||||||||| |||||||| ||||| |||||||| || || ||||||||||||||    
T  33609753 tagctattgctatacaattcataatagtatttgtgctatcacaaacattcttgacaatgttatgtcactttaagtttggagccttcttgttctatgctgg 33609852  T
Q  185 ttgggttgttgtgatgactcttttcattatannnnnnnngccggagactaaaggaattgctttggattcaatgcacatcatatggggtaaacattggttt 284  Q
    |||||||| ||||||||||||||| ||||||        ||| ||||||||||||||| |||||||||||||| ||| ||||||||  ||||||||||||    
T  33609853 ttgggttgctgtgatgactctttttattatatttttcttgcctgagactaaaggaattcctttggattcaatgtacaccatatgggaaaaacattggttt 33609952  T
Q  285 tggtatcggtttgttaaaggagaagacggagaaggaaatcatccatgaagtttg 338  Q
    |||| ||| |||||||||||||||||  |  ||| |||||||||||||||||||    
T  33609953 tggtgtcgatttgttaaaggagaagatcgtcaagaaaatcatccatgaagtttg 33610006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 616 - 863
Target Start/End: Original strand, 33624884 - 33625136
Alignment:
Q  616 tttccttcttttctttgctatacacgttccttttagaattcat----taagcaagatttatcgcaacaaattggtatcaaagagcattggttcgattcaa 711  Q
    ||||||| |||||||| |||||||| ||  ||||| |||||||    |||| |||||||||| | |||||||| |||| ||||| || ||||||||| ||    
T  33624884 tttccttgttttctttcctatacactttaattttacaattcatcaattaagaaagatttatccccacaaattgctatctaagagtat-ggttcgatttaa 33624982  T
Q  712 gctttc-gtcaatggcaaatggaagcacaacctcaaaccaattccc-tgcaaatctgctagttttcaaagaagaacactatgacagatggtgcgcacata 809  Q
    |||||  ||| || || ||||||||  ||||||||||||||| ||| || |||||||  |||||| |||| |||||| ||||| ||||||||||||||||    
T  33624983 gctttatgtcgatagcgaatggaagatcaacctcaaaccaatccccatgtaaatctgtaagtttttaaaggagaacattatgagagatggtgcgcacata 33625082  T
Q  810 tgagagtcatattcacgtttcaagatgttcttgagatcgtgaatgatggcatac 863  Q
    ||||||||||||||| | |||||||| ||||||||||||| |||||||||||||    
T  33625083 tgagagtcatattcaagcttcaagattttcttgagatcgtaaatgatggcatac 33625136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 85 - 310
Target Start/End: Original strand, 33619035 - 33619260
Alignment:
Q  85 tagctgttgctgtgcatttcataatgatatttgtgttatcgcaaacattcttgactatgttatgccacttgaagtttggggcatttttgttctatgctgg 184  Q
    |||||||||||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||  | |||||||||      
T  33619035 tagctgttgctgtgcaattcataataatctttgtgttatcgcaaacattcttgacaatgttatgccacatgaagtttggggccttcgtcttctatgcttt 33619134  T
Q  185 ttgggttgttgtgatgactcttttcattatannnnnnnngccggagactaaaggaattgctttggattcaatgcacatcatatggggtaaacattggttt 284  Q
    ||||||| ||||||||||||| ||  ||||         ||| ||||| ||||||||| ||||||| |||||| |||  |||||||| | ||| ||||||    
T  33619135 ttgggttattgtgatgactctgtttgttatcttcttcttgcctgagaccaaaggaattcctttggagtcaatgtacactatatggggcagacactggttt 33619234  T
Q  285 tggtatcggtttgttaaaggagaaga 310  Q
    |||| ||||| |||||||||| ||||    
T  33619235 tggtctcggtatgttaaaggacaaga 33619260  T

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Target: chr3; HSP #6
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 85 - 307
Target Start/End: Original strand, 33596326 - 33596548
Alignment:
Q  85 tagctgttgctgtgcatttcataatgatatttgtgttatcgcaaacattcttgactatgttatgccacttgaagtttggggcatttttgttctatgctgg 184  Q
    |||| |||| ||| || ||||||||  | ||||||||||| |||||||||||||| ||| |||||||||| |||||||| || || |||||||||||       
T  33596326 tagcagttggtgtacaattcataatcttgtttgtgttatcacaaacattcttgacaatgctatgccacttcaagtttggtgctttcttgttctatgcatt 33596425  T
Q  185 ttgggttgttgtgatgactcttttcattatannnnnnnngccggagactaaaggaattgctttggattcaatgcacatcatatggggtaaacattggttt 284  Q
    ||||||||  ||||||||||| || || ||         ||| ||||| ||||||||||||||||| |||||| | || |||||||| |||||||||| |    
T  33596426 ttgggttgcagtgatgactctatttatcattttctttttgcctgagaccaaaggaattgctttggagtcaatgtatattatatggggcaaacattggtat 33596525  T
Q  285 tggtatcggtttgttaaaggaga 307  Q
    |||   |||||||||||||||||    
T  33596526 tggcggcggtttgttaaaggaga 33596548  T

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Target: chr3; HSP #7
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 85 - 191
Target Start/End: Original strand, 33623851 - 33623957
Alignment:
Q  85 tagctgttgctgtgcatttcataatgatatttgtgttatcgcaaacattcttgactatgttatgccacttgaagtttggggcatttttgttctatgctgg 184  Q
    ||||||||| |||||||||||||||| | |||||| ||||||||||||||||||||||||||||||| ||  | ||||||||  ||||||||||||| ||    
T  33623851 tagctgttgttgtgcatttcataatggtctttgtgctatcgcaaacattcttgactatgttatgccagttatactttggggccattttgttctatgcggg 33623950  T
Q  185 ttgggtt 191  Q
    |||||||    
T  33623951 ttgggtt 33623957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 85 - 309
Target Start/End: Original strand, 33603457 - 33603681
Alignment:
Q  85 tagctgttgctgtgcatttcataatgatatttgtgttatcgcaaacattcttgactatgttatgccacttgaagtttggggcatttttgttctatgctgg 184  Q
    |||| |||| ||| || ||||||||  | ||||||||||| |||||||||||||| ||| |||||||||| |||||||| || || |||||||||||       
T  33603457 tagcagttggtgtacaattcataatcttgtttgtgttatcacaaacattcttgacaatgctatgccacttcaagtttggtgctttcttgttctatgcatt 33603556  T
Q  185 ttgggttgttgtgatgactcttttcattatannnnnnnngccggagactaaaggaattgctttggattcaatgcacatcatatggggtaaacattggttt 284  Q
    ||||||||  ||||||||||| || || ||         ||| ||||| ||||||||||||||||| |||||| | || |||||||| |||||||||| |    
T  33603557 ttgggttgcagtgatgactctatttatcattttctttttgcctgagaccaaaggaattgctttggagtcaatgtatattatatggggcaaacattggtat 33603656  T
Q  285 tggtatcggtttgttaaaggagaag 309  Q
    |||   ||||||||||||| |||||    
T  33603657 tggcggcggtttgttaaagtagaag 33603681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 85 - 307
Target Start/End: Original strand, 33589154 - 33589376
Alignment:
Q  85 tagctgttgctgtgcatttcataatgatatttgtgttatcgcaaacattcttgactatgttatgccacttgaagtttggggcatttttgttctatgctgg 184  Q
    |||| |||| ||| || ||||||||  | ||| ||||||| |||||||||||||| ||| |||||||||| |||||||| || || |||||||||||       
T  33589154 tagcagttggtgtacaattcataatcttgtttatgttatcacaaacattcttgacaatgctatgccacttcaagtttggtgctttcttgttctatgcatt 33589253  T
Q  185 ttgggttgttgtgatgactcttttcattatannnnnnnngccggagactaaaggaattgctttggattcaatgcacatcatatggggtaaacattggttt 284  Q
    ||||||||  ||||||||||| || || ||         ||| ||||| ||||||||||||||||| |||||| | || |||||||| |||||||||| |    
T  33589254 ttgggttgcagtgatgactctatttatcattttctttttgcctgagaccaaaggaattgctttggagtcaatgtatattatatggggcaaacattggtat 33589353  T
Q  285 tggtatcggtttgttaaaggaga 307  Q
    |||   |||||||||||||||||    
T  33589354 tggcggcggtttgttaaaggaga 33589376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 706 - 752
Target Start/End: Original strand, 33628610 - 33628656
Alignment:
Q  706 attcaagctttcgtcaatggcaaatggaagcacaacctcaaaccaat 752  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33628610 attcaagctttcgtcaatggcaaatggaagcacaacctcaaaccaat 33628656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 215
Target Start/End: Original strand, 33563573 - 33563703
Alignment:
Q  85 tagctgttgctgtgcatttcataatgatatttgtgttatcgcaaacattcttgactatgttatgccacttgaagtttggggcatttttgttctatgctgg 184  Q
    ||||| || ||||||| |||||||  ||||||||||| || || ||||||||||| |||||||| |||||||||| ||| || || |||||| ||  ||     
T  33563573 tagctatttctgtgcaattcataactatatttgtgttgtctcagacattcttgacaatgttatgtcacttgaagtatggtgctttcttgttccatagtgc 33563672  T
Q  185 ttgggttgttgtgatgactcttttcattata 215  Q
    |||| ||||||| ||||| || || ||||||    
T  33563673 ttggattgttgtcatgaccctctttattata 33563703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 814 - 863
Target Start/End: Complemental strand, 1744832 - 1744783
Alignment:
Q  814 agtcatattcacgtttcaagatgttcttgagatcgtgaatgatggcatac 863  Q
    ||||||||| |  ||||||||||||| ||| |||||||||||||||||||    
T  1744832 agtcatatttagatttcaagatgttcctgaaatcgtgaatgatggcatac 1744783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 432 - 528
Target Start/End: Complemental strand, 12059882 - 12059786
Alignment:
Q  432 ttgtttagatttgataaaatctatcattcatagttgttaggagttcacttgtgttaaaagttagttaagaagtttgttaataattgagagtttttag 528  Q
    |||||| |||||||| ||||| || |||||||||||||| ||||| |||||||||| | |||||||||||||||||||| ||  |||||| ||||||    
T  12059882 ttgtttggatttgatcaaatccataattcatagttgttacgagtttacttgtgttacaggttagttaagaagtttgttattagatgagagattttag 12059786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 439 - 558
Target Start/End: Complemental strand, 12053171 - 12053055
Alignment:
Q  439 gatttgataaaa-tctatcattcatagttgttaggagttcacttgtgttaaaagttagttaagaagtttgttaataattgagagtttttagcaagttaat 537  Q
    |||||||||||| || || |||||||||||||||||||| |||||||||| |    ||||||||||| ||||| || ||||||  ||||||||||||  |    
T  12053171 gatttgataaaaatccataattcatagttgttaggagtttacttgtgttaca----agttaagaagtatgttagtagttgagaaattttagcaagtttct 12053076  T
Q  538 tagcatgtgtgagtgtatatt 558  Q
    ||| |  ||||||||||||||    
T  12053075 tagtaattgtgagtgtatatt 12053055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 939 - 999
Target Start/End: Original strand, 36867638 - 36867698
Alignment:
Q  939 tgttcttgatccattagtgtgtgggttcaaacatctttgagaagatcattgaggaagaaac 999  Q
    |||| |||||||||||||||| |||||||||||||||  ||||||| ||||| ||||||||    
T  36867638 tgttattgatccattagtgtgagggttcaaacatcttcaagaagataattgatgaagaaac 36867698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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