View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0619_low_10 (Length: 451)
Name: NF0619_low_10
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0619_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 113 - 420
Target Start/End: Complemental strand, 32408899 - 32408594
Alignment:
| Q |
113 |
catagcaggggtattttactatttttctttagcaatcctaactttgaaagaattatctccctcgctcagcatagcgacagcttaaacccttgccgccgtg |
212 |
Q |
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| T |
32408899 |
catagcaggggtattttactatttttctttagcaatcctaactttgaaagaatt--ctccctcgctcagcatagcgacagcttaaacccttgccgccgtg |
32408802 |
T |
|
| Q |
213 |
gaagctagccagggtttaccgttcgatttctatctccgatcatggaaggaatcgaaatggaggaatcaacattcaacaacgaatccaacgatgatatatg |
312 |
Q |
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| T |
32408801 |
gaagctagccagggtttaccgtttgatttctatctccgatcatggaaggaatcgagatggaggaatcaacattcaacaacgaatccaacgatgatatatg |
32408702 |
T |
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| Q |
313 |
caattcaattctctctcgtttctcaaactccaccgctgtaaaccaccaacacctctgtgccgtcatcggcgcaatgtcacaggaactcaaagatcacaac |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32408701 |
caattcaattctctctcgtttctcaaactccaccgctgtaaaccaccaacacctctgtgccgtcatcggcgcaatgtcacaggaactcaaagatcacaac |
32408602 |
T |
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| Q |
413 |
ctctcttc |
420 |
Q |
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|||||||| |
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| T |
32408601 |
ctctcttc |
32408594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 195 - 420
Target Start/End: Original strand, 32385082 - 32385317
Alignment:
| Q |
195 |
taaacccttgccgccgtggaagctagc----cagggtttaccgttcgatttctatctcc------gatcatggaaggaatcgaaatggaggaatcaacat |
284 |
Q |
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||||||||||||||||||| ||||||| |||||||||| |||||||||| || ||| ||||||||||||||||||||||||| || |||||| |
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| T |
32385082 |
taaacccttgccgccgtgggagctagctaaccagggtttactgttcgatttccatttccatttccgatcatggaaggaatcgaaatggagcaaccaacat |
32385181 |
T |
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| Q |
285 |
tcaacaacgaatccaacgatgatatatgcaattcaattctctctcgtttctcaaactccaccgctgtaaaccaccaacacctctgtgccgtcatcggcgc |
384 |
Q |
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| T |
32385182 |
tcaacaacgaatccaacgatgatatatgcaattcaatcctctctcgtttctcaaaatccaccgccgttagccaccaacacctctgcaccgtcatcggcgc |
32385281 |
T |
|
| Q |
385 |
aatgtcacaggaactcaaagatcacaacctctcttc |
420 |
Q |
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||||||||||||||||||||| ||||||||| |||| |
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| T |
32385282 |
aatgtcacaggaactcaaagaccacaacctcccttc |
32385317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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