View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0619_low_11 (Length: 421)

Name: NF0619_low_11
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0619_low_11
NF0619_low_11
[»] chr6 (10 HSPs)
chr6 (30-302)||(6436683-6436956)
chr6 (33-309)||(6432596-6432875)
chr6 (33-153)||(6403500-6403620)
chr6 (102-309)||(7993629-7993836)
chr6 (254-310)||(8913668-8913724)
chr6 (104-151)||(10579180-10579227)
chr6 (118-150)||(6427109-6427141)
chr6 (104-147)||(6596317-6596360)
chr6 (28-81)||(6602734-6602787)
chr6 (188-307)||(6403328-6403450)
[»] chr1 (7 HSPs)
chr1 (104-150)||(30827723-30827769)
chr1 (108-307)||(33160954-33161165)
chr1 (210-307)||(29658508-29658605)
chr1 (254-307)||(29691067-29691120)
chr1 (254-307)||(29718579-29718632)
chr1 (104-149)||(7555124-7555169)
chr1 (265-309)||(19468115-19468159)
[»] chr5 (2 HSPs)
chr5 (101-146)||(17205662-17205707)
chr5 (256-309)||(38267154-38267207)
[»] chr4 (4 HSPs)
chr4 (188-228)||(55908258-55908298)
chr4 (107-144)||(10633967-10634004)
chr4 (266-309)||(55908336-55908379)
chr4 (241-310)||(53761371-53761440)
[»] chr2 (2 HSPs)
chr2 (188-228)||(1037194-1037234)
chr2 (266-309)||(1037272-1037315)


Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 30 - 302
Target Start/End: Complemental strand, 6436956 - 6436683
Alignment:
Q  30 agttttctcccaaaaggtttctactttgacctctcttaatgcttccgacattcaatctcttaaaagctctcacctgttactcattgccgattgtttccct 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6436956 agttttctcccaaaaggtttctactttgacctctcttaatgcttccgacattcattctcttaaaagctctcacctgttactcattgccgattgtttccct 6436857  T
Q  130 ttgctcaaacaactcaacctcggtaaaactttgagcaacaatcacacttatgcaattcactctttgttatccaagtgtc-gtatacaacatttggatctt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6436856 ttgctcaaacaactcaacctcggtaaaactttgagcaacaatcacacttatgcaattcactctttgttatccaagtgtcagtatacaacatttggatctt 6436757  T
Q  229 gatcgtagttactttctgaagaataaacatgttgccaagttgtctttcttccttgctgatttggtgtctataaa 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6436756 gatcgtagttactttctgaagaataaacatgttgccaagttgtctttcttccttgctgatttggtgtctataaa 6436683  T

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Target: chr6; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 33 - 309
Target Start/End: Complemental strand, 6432875 - 6432596
Alignment:
Q  33 tttctcccaaaaggtttctactttgacctctcttaatgcttccgacattcaatctcttaaaagctctcacctgttactcattgccgattgtttccctttg 132  Q
    ||||||||  |||||  |||||||||||||||| |||  |||| ||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  6432875 tttctcccgtaaggtcactactttgacctctctcaattgttcccacattcattctcttaatagctctcacctcttactcattgccgattgtttccctttg 6432776  T
Q  133 ctcaaacaactcaacctcggtaaaactttgagcaacaatcacacttatgcaattcactctttgttatccaagtgtcg---tatacaacatttggatcttg 229  Q
    ||||||||||||||||| ||| | ||||| | | ||||||||||| ||||| |||| ||| | |||||||||||| |   |||||||||||||||||||     
T  6432775 ctcaaacaactcaaccttggtcacacttttatccacaatcacactaatgcatttcaatctctattatccaagtgtagatatatacaacatttggatcttt 6432676  T
Q  230 atcgtagttactttctgaagaataaacatgttgccaagttgtctttcttccttgctgatttggtgtctataaaccttagt 309  Q
     | |   | | ||||| ||  || |||||||||||  || |||||| || ||||||||||||||||||||||||||||||    
T  6432675 gtggacttcattttctaaatgatcaacatgttgccgggtcgtctttgtttcttgctgatttggtgtctataaaccttagt 6432596  T

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Target: chr6; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 33 - 153
Target Start/End: Complemental strand, 6403620 - 6403500
Alignment:
Q  33 tttctcccaaaaggtttctactttgacctctcttaatgcttccgacattcaatctcttaaaagctctcacctgttactcattgccgattgtttccctttg 132  Q
    |||||||| ||||||  ||||||||||||||||| ||  |||||||||| | |||||||| |||||||| || ||||||||||||||||||||||||  |    
T  6403620 tttctcccgaaaggtcactactttgacctctcttgattgttccgacattgattctcttaatagctctcatctcttactcattgccgattgtttccctaag 6403521  T
Q  133 ctcaaacaactcaacctcggt 153  Q
    |||||||||||||||||||||    
T  6403520 ctcaaacaactcaacctcggt 6403500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 102 - 309
Target Start/End: Original strand, 7993629 - 7993836
Alignment:
Q  102 cctgttactcattgccgattgtttccctttgctcaaacaactcaacctcggtaaaactttgagcaacaatcacacttatgcaattcactctttgttatcc 201  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||   ||  ||| ||  |   ||| | ||| | |||||| |||||| |||    
T  7993629 cctgttactcattgccaattgtttccctttgctcaaagaactcaacctcggt--cacaatga-cactagctacattaatgaatttcactatttgttgtcc 7993725  T
Q  202 aagtgtc---gtatacaacatttggatcttgatcgtagttactttctgaagaataaacatgttgccaagttgtctttcttccttgctgatttggtgtcta 298  Q
    |||||||   ||||||||||||| |||||| || ||| ||| ||||||||  ||  |||||||||  ||||||| ||  | |||| ||||||||||||||    
T  7993726 aagtgtcgatgtatacaacatttagatcttaatggtatttattttctgaatgatctacatgttgctgagttgtcattacttcttggtgatttggtgtcta 7993825  T
Q  299 taaaccttagt 309  Q
    |||||||||||    
T  7993826 taaaccttagt 7993836  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 8913668 - 8913724
Alignment:
Q  254 aacatgttgccaagttgtctttcttccttgctgatttggtgtctataaaccttagtc 310  Q
    ||||||||| |||||||||||| || |||| | ||||||||||||||||||||||||    
T  8913668 aacatgttgtcaagttgtctttgtttcttggtaatttggtgtctataaaccttagtc 8913724  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 10579180 - 10579227
Alignment:
Q  104 tgttactcattgccgattgtttccctttgctcaaacaactcaacctcg 151  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||||||    
T  10579180 tgttactcgttgccgattgtttcccattgctcaaagaactcaacctcg 10579227  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 150
Target Start/End: Complemental strand, 6427141 - 6427109
Alignment:
Q  118 gattgtttccctttgctcaaacaactcaacctc 150  Q
    |||||||||||||||||||||||||||||||||    
T  6427141 gattgtttccctttgctcaaacaactcaacctc 6427109  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 6596317 - 6596360
Alignment:
Q  104 tgttactcattgccgattgtttccctttgctcaaacaactcaac 147  Q
    ||||||||||||| ||||||||||| ||||||||| ||||||||    
T  6596317 tgttactcattgctgattgtttcccattgctcaaagaactcaac 6596360  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 6602734 - 6602787
Alignment:
Q  28 caagttttctcccaaaaggtttctactttgacctctcttaatgcttccgacatt 81  Q
    |||| |||||| |||||| || |||||||||||||||| ||||||||| |||||    
T  6602734 caagctttctctcaaaagattactactttgacctctctcaatgcttccaacatt 6602787  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 307
Target Start/End: Complemental strand, 6403450 - 6403328
Alignment:
Q  188 actctttgttatccaagtgtcg---tatacaacatttggatcttgatcgtagttactttctgaagaataaacatgttgccaagttgtctttcttccttgc 284  Q
    ||||| |||||||||||||| |   ||||||||||||||||||| ||   ||||| ||||||||  ||  |||||||||  |||| ||||| || ||       
T  6403450 actctctgttatccaagtgtagatgtatacaacatttggatcttaataacagttattttctgaatgatttacatgttgctgagttttctttgtttctaca 6403351  T
Q  285 tgatttggtgtctataaacctta 307  Q
    ||| |||||||||||||||||||    
T  6403350 tgagttggtgtctataaacctta 6403328  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 30827769 - 30827723
Alignment:
Q  104 tgttactcattgccgattgtttccctttgctcaaacaactcaacctc 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30827769 tgttactcattgccgattgtttccctttgctcaaacaactcaacctc 30827723  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 108 - 307
Target Start/End: Complemental strand, 33161165 - 33160954
Alignment:
Q  108 actcattgccgattgtttccctttgctcaaacaactcaacctcggtaaaactttgagcaacaatcacactta---------tgcaattcactctttgtta 198  Q
    |||| |||||||||||||||||||||||||| |||||||||||||| |  ||  |  ||||||||||||| |         || | |||||||| | |||    
T  33161165 actcgttgccgattgtttccctttgctcaaaaaactcaacctcggtcaccctcagttcaacaatcacactaacttcattaatggatttcactctctctta 33161066  T
Q  199 tccaagtgtcg---tatacaacatttggatcttgatcgtagttactttctgaagaataaacatgttgccaagttgtctttcttccttgctgatttggtgt 295  Q
    ||||| ||||    ||||||| ||||||||||  |||  | ||| ||||||||  || ||||||||||| |||| ||||| || ||||||| ||||||||    
T  33161065 tccaactgtcaatatatacaatatttggatctaaatcacacttattttctgaatgatcaacatgttgccgagttctctttgtttcttgctgctttggtgt 33160966  T
Q  296 ctataaacctta 307  Q
    ||||||||||||    
T  33160965 ctataaacctta 33160954  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 307
Target Start/End: Original strand, 29658508 - 29658605
Alignment:
Q  210 tatacaacatttggatcttgatcgtagttactttctgaagaataaacatgttgccaagttgtctttcttccttgctgatttggtgtctataaacctta 307  Q
    |||||||||||||||||||  ||| | | | ||||| ||  || ||||||||||| |||| ||||| || |||||| |||||||||||||||||||||    
T  29658508 tatacaacatttggatcttagtcgcactaagtttctcaatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaacctta 29658605  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 29691067 - 29691120
Alignment:
Q  254 aacatgttgccaagttgtctttcttccttgctgatttggtgtctataaacctta 307  Q
    ||||||||||| |||| ||||| || |||||| |||||||||||||||||||||    
T  29691067 aacatgttgccgagttctctttgtttcttgctcatttggtgtctataaacctta 29691120  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 29718579 - 29718632
Alignment:
Q  254 aacatgttgccaagttgtctttcttccttgctgatttggtgtctataaacctta 307  Q
    ||||||||||| |||| ||||| || |||||| |||||||||||||||||||||    
T  29718579 aacatgttgccgagttctctttgtttcttgctcatttggtgtctataaacctta 29718632  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 7555169 - 7555124
Alignment:
Q  104 tgttactcattgccgattgtttccctttgctcaaacaactcaacct 149  Q
    ||||||||||||| || ||||||||||||||| || ||||||||||    
T  7555169 tgttactcattgctgaatgtttccctttgctcgaagaactcaacct 7555124  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 19468115 - 19468159
Alignment:
Q  265 aagttgtctttcttccttgctgatttggtgtctataaaccttagt 309  Q
    ||||||||||| || |||| |||||| ||||||||||||||||||    
T  19468115 aagttgtctttgtttcttggtgatttagtgtctataaaccttagt 19468159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 17205707 - 17205662
Alignment:
Q  101 acctgttactcattgccgattgtttccctttgctcaaacaactcaa 146  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  17205707 acctgttactcattgccgattgtttccctttgctcaaagaactcaa 17205662  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 38267154 - 38267207
Alignment:
Q  256 catgttgccaagttgtctttcttccttgctgatttggtgtctataaaccttagt 309  Q
    ||||||||| |||||||||| || ||| || || ||||||||||||||||||||    
T  38267154 catgttgccgagttgtctttgtttcttcctcatctggtgtctataaaccttagt 38267207  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 55908258 - 55908298
Alignment:
Q  188 actctttgttatccaagtgtcgtatacaacatttggatctt 228  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  55908258 actctttgttatccaagtgtcgtatacaacatttggatctt 55908298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 10633967 - 10634004
Alignment:
Q  107 tactcattgccgattgtttccctttgctcaaacaactc 144  Q
    |||||||||||||||||||||||||||||||| |||||    
T  10633967 tactcattgccgattgtttccctttgctcaaagaactc 10634004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 55908336 - 55908379
Alignment:
Q  266 agttgtctttcttccttgctgatttggtgtctataaaccttagt 309  Q
    |||||||||| || |||| |||||||||||||||||||||||||    
T  55908336 agttgtctttgtttcttggtgatttggtgtctataaaccttagt 55908379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 53761371 - 53761440
Alignment:
Q  241 tttctgaagaataaacatgttgccaagttgtctttcttccttgctgatttggtgtctataaaccttagtc 310  Q
    |||||||| ||| |||||||||  || ||||||||  | |||| |||||||||||| |||||||||||||    
T  53761371 tttctgaacaatcaacatgttgtaaatttgtctttgcttcttggtgatttggtgtccataaaccttagtc 53761440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 1037194 - 1037234
Alignment:
Q  188 actctttgttatccaagtgtcgtatacaacatttggatctt 228  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1037194 actctttgttatccaagtgtcgtatacaacatttggatctt 1037234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 1037272 - 1037315
Alignment:
Q  266 agttgtctttcttccttgctgatttggtgtctataaaccttagt 309  Q
    |||||||||| || |||| |||||||||||||||||||||||||    
T  1037272 agttgtctttgtttcttggtgatttggtgtctataaaccttagt 1037315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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