View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0619_low_12 (Length: 413)
Name: NF0619_low_12
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0619_low_12 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0131 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 30 - 413
Target Start/End: Original strand, 4487588 - 4487972
Alignment:
| Q |
30 |
tttttgtataaaaccagctggttcagttttgacatacaaaccaaaaaatgaaattgaagggaataactacctctgaaatagcgttggaagttttgaaaga |
129 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4487588 |
tttttgtataaaaccaggtggttcagttttgacatacaaaccaaaaaatgaaattgaagggaataactacctctgaaatagcgttggaagttttgaaaga |
4487687 |
T |
|
| Q |
130 |
tccctaaaacctcctcctaaattaacttcactttcatgacctgaaaaa-atatcatacatttagaaacnnnnnnnttgctatcatattttaatgcatcag |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
4487688 |
tccctaaaacctcctcctaaattaacttcactttcatgacctgaaaaagatatcatacatttaaaaacaaaaaaattgctatcatattttaatgcatcag |
4487787 |
T |
|
| Q |
229 |
aaaacttgaaggaaatacgattttcgatctgagaaagaaaatatgcctaccaatcagattttatgttcttcatcaaaaatcgctatcatgttttaatatc |
328 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4487788 |
aaaatttgaaggaaatacgattttcgatctgagaaagaaaatatgcctaccaatcagattttatgttcttcatcaaaaatcgctatcatgttttaatatc |
4487887 |
T |
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| Q |
329 |
atacacttagaaaccaacgtttgcgtatagtcacaccttcactcagcggggtttaacttacaacaaaagctaactaacacacaca |
413 |
Q |
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| T |
4487888 |
atacacttagaaaccaacgtttgcgtatagtcacaccttcactcagcggggtttaacttacaacaaaagctaactaacacacaca |
4487972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 30 - 399
Target Start/End: Original strand, 22067077 - 22067458
Alignment:
| Q |
30 |
tttttgtataaaaccagctggttcagttttgacatacaaaccaaaaaatga-----------aattgaagggaataactacctctgaaatagcgttggaa |
118 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
22067077 |
tttttgtataaaaccggctggttcagttttgacatacaaaccaaaaaatgattaaaaaatgaaattgaagggaataactacctctgaaacagcgttggaa |
22067176 |
T |
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| Q |
119 |
gttttgaaagatccctaaaacctcctcctaaattaacttcactttcatgacctgaaaaa-atatcatacatttagaaacnnnnnnnttgctatcatattt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
22067177 |
gttttgaaagatccctaaaacctcctcctaaattaacttcactttcatgacctgaaaaagatatcatacatttagaaacagaataattgctatcatattt |
22067276 |
T |
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| Q |
218 |
taatgcatcagaaaacttgaaggaaatacgattttcgatctgagaaagaaaatatgcctaccaatcagattttatgttcttcatcaaaaatcgctatcat |
317 |
Q |
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||||||||||||||| |||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22067277 |
taatgcatcagaaaatttgaaggaaataagatttccgatctgaaaaagaaaacatgcctaccaatcagattttatgttcttcatcaaaaatcgctatcat |
22067376 |
T |
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| Q |
318 |
gttttaatatcatacacttagaaaccaacgtttgcgtatagtcacaccttcactcagcggggtttaacttacaacaaaagct |
399 |
Q |
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| T |
22067377 |
gttttaatatcatacacttagaaaccaacatttgcgtatagtctgaccttcactcagtggggtttaacttacaacaaaagct |
22067458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 30 - 413
Target Start/End: Original strand, 19023178 - 19023573
Alignment:
| Q |
30 |
tttttgtataaaaccagctggttcagttttgacatacaaaccaaaaaatga-----------aattgaagggaataactacctctgaaatagcgttggaa |
118 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| |
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| T |
19023178 |
tttttgtataaaaccggctggttcagttttgacatacaaaccaaaaaatgattaaaaaatgaaattgaagggaataactacctttgaaacagcgttggaa |
19023277 |
T |
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| Q |
119 |
gttttgaaagatccctaaaacctcctcctaaattaacttcactttcatgacctgaaaaa-atatcatacatttagaaacnnnnnnnttgctatcatattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
19023278 |
gttttgaaagatccctaaaacctcctcctaaattaacttcactttcataacctgaaaaagatatcatacatttagaaacagaaaaattgctatcatattt |
19023377 |
T |
|
| Q |
218 |
taatgcatcagaaaacttgaaggaaatacgattttcgatctgagaaagaaaatatgcctaccaatcagattttatgttcttcatcaaaaatcgctatcat |
317 |
Q |
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||||||||||||||| |||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19023378 |
taatgcatcagaaaatttgaaggaaataagatttccgatctgaaaaagaaaacatgcctaccaatcagattttatgttcttcatcaaaaatcgctatcat |
19023477 |
T |
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| Q |
318 |
gttttaatatcatacacttagaaaccaacgtttgcgtatagtcacaccttcactcagcggggtttaacttacaacaaaagctaactaacacacaca |
413 |
Q |
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| T |
19023478 |
gatttaatatcacacacttagaaaccaacgtttgcgaatagtctgaccttcactcagtggggtttaacttacaacaaaagctaactaacacacaca |
19023573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 30 - 413
Target Start/End: Original strand, 22621380 - 22621783
Alignment:
| Q |
30 |
tttttgtataaaaccagctggttcagttttgacatacaaaccaaaa------------aatgaaattgaagggaataactacctctgaaatagcgttgga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||| |
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| T |
22621380 |
tttttgtataaaaccagctggttcagttttgacatacaaaccaaaaaattattaaaaaaatgaaattgaagggaataactacctctgaaacaacgttgga |
22621479 |
T |
|
| Q |
118 |
agttttgaaagatccctaaaacctcctcctaaattaacttcactttcatgacctgaaaaa-atatcatacatttagaaacnnnnnnnttgctatcatatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||| |
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| T |
22621480 |
agttttgaaagatccctaaaacctcctcctaaattaacttcactttcatgacctgaaaaagatatcatacatttagaaatagaaaaatcgctatcatatt |
22621579 |
T |
|
| Q |
217 |
ttaatgcatcagaaaacttgaaggaaatacgattttcgatctgagaaagaaaa------tatgcctaccaatcagattttatgttcttcatcaaaaatcg |
310 |
Q |
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|||||||||||| ||| ||||||||||| ||||| ||||||| ||| |||| ||||||| | ||||| ||||||||||||||||||||| ||| |
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| T |
22621580 |
ttaatgcatcaggaaatatgaaggaaataagatttcagatctgaaaaaaaaaaaaaaactatgcctgctaatcaaattttatgttcttcatcaaaattcg |
22621679 |
T |
|
| Q |
311 |
ctatcatgttttaatatcatacacttagaaaccaacgtttgcgtatagtcacaccttcactcag-cggggtttaacttacaacaaaagctaactaacaca |
409 |
Q |
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||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| ||||| ||||||||||||||| |||||| ||||||||||| |
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| T |
22621680 |
ctatcatgttttaatatcatacatttagaaaccaaagtctgcgtatagtcacaccttctctcagttggggtttaacttacaccaaaagttaactaacaca |
22621779 |
T |
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| Q |
410 |
caca |
413 |
Q |
| |
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|||| |
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| T |
22621780 |
caca |
22621783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 13286 - 13246
Alignment:
| Q |
266 |
aaaatatgcctaccaatcagattttatgttcttcatcaaaa |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
13286 |
aaaatatgcctaccaatcagattttatgttcttcatcaaaa |
13246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 173
Target Start/End: Original strand, 43255044 - 43255134
Alignment:
| Q |
84 |
tgaagggaataactacctctgaaatagcgttggaagttttgaaagatcc-ctaaaacctcctcctaaattaacttcactttcatgacctga |
173 |
Q |
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||||||||| |||||||||||||| || ||||||||| |||| | | | | || | |||||||||||||||||||||||||||||||||| |
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| T |
43255044 |
tgaagggaaaaactacctctgaaacagtgttggaagtactgaatgttgctccaatatctcctcctaaattaacttcactttcatgacctga |
43255134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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