View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0619_low_14 (Length: 409)
Name: NF0619_low_14
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0619_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 22505213 - 22505077
Alignment:
| Q |
3 |
gataccgcattcgtgtgtttggcacgaaaatgctatcgtgccatttaacatttttcttataataatatcaataaaaacattattgcatgcatggtgaact |
102 |
Q |
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| T |
22505213 |
gataccgcattcgtgtgtttggcacgaaaatgctatcgttccatttagcatttttcttataataatatcaataaaaacattattgcatgcatggtgaacc |
22505114 |
T |
|
| Q |
103 |
acatgttctttaggatatttctggtgattaatttatg |
139 |
Q |
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| T |
22505113 |
acatgttctttaggatgtttctggtgattaatttatg |
22505077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 137 - 253
Target Start/End: Complemental strand, 22504219 - 22504097
Alignment:
| Q |
137 |
atgctagttttctcaaagtaaagtttattttactttctgctcgtcgaact------tagtttcttaactttcttttattttatgttaattgaaactttat |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22504219 |
atgctagttttctcaaagtaaagtttattttactttctgctcgtcgaactaattattagtttcttaactttcttttactttatgttaattgaaactttat |
22504120 |
T |
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| Q |
231 |
tttactttatgatatccaatctg |
253 |
Q |
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| T |
22504119 |
tttactttatgctatccaatctg |
22504097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 29530637 - 29530691
Alignment:
| Q |
187 |
tagtttcttaactttcttttattttatgttaattgaaactttattttactttatg |
241 |
Q |
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| T |
29530637 |
tagtttcttaactttcttttactttatgttaattgtaactttcttttactttatg |
29530691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 18643005 - 18642962
Alignment:
| Q |
59 |
ttataataatatcaataaaaacattattgcatgcatggtgaact |
102 |
Q |
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| T |
18643005 |
ttataataatatcaataaaaacattaatgcatgcatggtgaact |
18642962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 18642800 - 18642763
Alignment:
| Q |
187 |
tagtttcttaactttcttttattttatgttaattgaaa |
224 |
Q |
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||||||||||||||||||||| | |||||||||||||| |
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| T |
18642800 |
tagtttcttaactttcttttactctatgttaattgaaa |
18642763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 13068544 - 13068489
Alignment:
| Q |
4 |
ataccgcattcgtgtgtttggcacgaaaatgctatcgtgccatttaacatttttct |
59 |
Q |
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| T |
13068544 |
ataccgcattcgtgtgttttgcaagaaaatgctatcgtgctatataacatttttct |
13068489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 25590342 - 25590385
Alignment:
| Q |
59 |
ttataataatatcaataaaaacattattgcatgcatggtgaact |
102 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
25590342 |
ttataataatatcaataaaaatattgatgcatgcatggtgaact |
25590385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 406
Target Start/End: Complemental strand, 38816695 - 38816628
Alignment:
| Q |
339 |
tgtcggtttcagacatggctaattctaggcgtgtccgtgcttccttgttacattcgtgactcgtgata |
406 |
Q |
| |
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| T |
38816695 |
tgtcggtgtcggacatggctaattcgaggagtgtccgtgattcatagttatattcgtgaatcgtgata |
38816628 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 38879641 - 38879702
Alignment:
| Q |
9 |
gcattcgtgtgtttggcacgaaaatgctatcgtgccatttaacatttttcttataataatat |
70 |
Q |
| |
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||||||||||| || ||||||||| | |||||||| ||||| |||||||||| |||| |||| |
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| T |
38879641 |
gcattcgtgtgattagcacgaaaaagttatcgtgctatttagcatttttcttttaattatat |
38879702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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