View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0619_low_16 (Length: 397)
Name: NF0619_low_16
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0619_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 34 - 389
Target Start/End: Complemental strand, 8449015 - 8448660
Alignment:
| Q |
34 |
gaacacctcaacgagctggattcagaggccttattagaaattctgcaggctactacctttccggtttctctggattcatccccaattcagaagacatttt |
133 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8449015 |
gaacacctcaacgagctggattcagaggccttattagaaattctgcaggctactacctttccggtttctctggattcatccccaattcagaagacatttt |
8448916 |
T |
|
| Q |
134 |
acttgctgagctatctactatctaccatggtttagtgctggtttgagacatagacatcaccgaatttgtgtgctacaccgactcacttctttgcttaaac |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8448915 |
acttgctgagctatctactatctaccatggtttagtgctggttcgagacatagacatcaccgaatttgtgtgctacaccgactcacttctttgcttaaac |
8448816 |
T |
|
| Q |
234 |
ctcattgcaggcccagccatgaattatcacagttatgctgctctcatcgatgatattacagacctgctgtcatccaacaatacttcaatcttccacactc |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8448815 |
ctcattgcaggcccagccatgaattatcacagttatgctgctctcatcgatgatattacagacctgctgtcatccaacaatacttcaatcttccacactc |
8448716 |
T |
|
| Q |
334 |
tgcgggagggtaaccaatgcgctgattttttggttaagattggagcttcctatgat |
389 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8448715 |
tgcgggagggtaaccaatgcgctgattttttggttaagattggagcttcctctgat |
8448660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 8449102 - 8449046
Alignment:
| Q |
30 |
ctaggaacacctcaacgagctggattcagaggccttattagaaattctgcaggctac |
86 |
Q |
| |
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| T |
8449102 |
ctaggaacacctcaacgagctggattcagaggccttattagaaattctgcaggctac |
8449046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 33 - 274
Target Start/End: Original strand, 28046390 - 28046632
Alignment:
| Q |
33 |
ggaacacctcaacgagctggattcagaggccttattagaaattctgcaggctactacctttccggtttctctggattcatccccaattcagaagacattt |
132 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || ||| |||||||||| |||||||| |||||||||||||| |||||| | |||||||||||||||| |
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| T |
28046390 |
ggaacacctcaacgagctggcttcagaggcctcatgagatattctgcaggttactacctatccggtttctctggtttcatctctaattcagaagacattt |
28046489 |
T |
|
| Q |
133 |
tacttgctgagctatctactatctaccatggttt-agtgctggtttgagacatagacatcaccgaatttgtgtgctacaccgactcacttctttgcttaa |
231 |
Q |
| |
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||||||||||||| ||| | |||||||| ||||| | | |||| | ||||| | |||||||| ||||||||||| |||| |||||| ||||||||||||| |
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| T |
28046490 |
tacttgctgagctctctgcaatctaccacggtttaacttctggctcgagacttggacatcactgaatttgtgtgttacaacgactcccttctttgcttaa |
28046589 |
T |
|
| Q |
232 |
acctcattgcaggcccagccatgaattatcacagttatgctgc |
274 |
Q |
| |
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| |||||| |||| ||||||||||||| ||||| ||||||||| |
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| T |
28046590 |
atctcattacaggaccagccatgaattttcacacttatgctgc |
28046632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 40557463 - 40557363
Alignment:
| Q |
30 |
ctaggaacacctcaacgagctggattcagaggccttattagaaattctgcaggctactacctttccggtttctctggattcatccccaattcagaagaca |
129 |
Q |
| |
|
||||||||||| ||| |||||| |||||| |||| |||||||||| |||||| | ||||||| ||||||||||| |||||||| ||||||||| ||| |
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| T |
40557463 |
ctaggaacaccgcaatgagctgacttcagaagcctcattagaaattttgcaggtttttacctttatggtttctctgggttcatccctaattcagaaaaca |
40557364 |
T |
|
| Q |
130 |
t |
130 |
Q |
| |
|
| |
|
|
| T |
40557363 |
t |
40557363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 370
Target Start/End: Complemental strand, 40557184 - 40557122
Alignment:
| Q |
308 |
caacaatacttcaatcttccacactctgcgggaggg-taaccaatgcgctgattttttggttaa |
370 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| ||||||||||| |||||||||| |||| |
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| T |
40557184 |
caacaatacttcaatctttcacaca-tgcgggaggggtaaccaatgcgttgattttttgtttaa |
40557122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 167
Target Start/End: Original strand, 31847852 - 31847953
Alignment:
| Q |
66 |
attagaaattctgcaggctactacctttccggtttctctggattcatccccaattcagaagacattttacttgctgagctatctactatctaccatggtt |
165 |
Q |
| |
|
||||||||||||||||| | ||| ||||| ||||||||||||||||| || |||||| | ||||| |||| || |||||| | ||||||| ||||||| |
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| T |
31847852 |
attagaaattctgcaggtttctatctttctggtttctctggattcattcctaattcatatgacatattacatgttgagctcttaactatctctcatggtt |
31847951 |
T |
|
| Q |
166 |
ta |
167 |
Q |
| |
|
|| |
|
|
| T |
31847952 |
ta |
31847953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 167
Target Start/End: Original strand, 11969207 - 11969346
Alignment:
| Q |
30 |
ctaggaacacctcaacgagctggattcagaggccttattagaaattctgcaggctactacctttccggtttctctggattcatccccaattcagaagaca |
129 |
Q |
| |
|
||||||||||| ||||||||||| || |||| || ||||||||| |||||| | ||||| ||| ||||| ||||| ||||| || |||||||| | | |
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| T |
11969207 |
ctaggaacaccacaacgagctggttttggaggtctcgttagaaattttgcaggtttctaccattctggtttttctgggttcattcctaattcagataaga |
11969306 |
T |
|
| Q |
130 |
ttttacttgctgagctatctacta--tctaccatggttta |
167 |
Q |
| |
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| |||||| ||||||| || |||| |||||||||||||| |
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|
| T |
11969307 |
tattacttactgagctctcaactatgtctaccatggttta |
11969346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 364
Target Start/End: Complemental strand, 4348842 - 4348784
Alignment:
| Q |
306 |
tccaacaatacttcaatcttccacactctgcgggagggtaaccaatgcgctgatttttt |
364 |
Q |
| |
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|||||||| |||| |||||| |||||| ||||||||||||| ||||||| ||||||||| |
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|
| T |
4348842 |
tccaacaacactttaatctttcacactttgcgggagggtaatcaatgcgttgatttttt |
4348784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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