View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0619_low_2 (Length: 601)

Name: NF0619_low_2
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0619_low_2
NF0619_low_2
[»] chr8 (6 HSPs)
chr8 (362-502)||(7988581-7988719)
chr8 (148-291)||(42308147-42308293)
chr8 (133-198)||(1774901-1774967)
chr8 (503-541)||(7988744-7988782)
chr8 (512-582)||(7977773-7977845)
chr8 (305-366)||(7997511-7997572)
[»] chr1 (4 HSPs)
chr1 (99-291)||(41323386-41323582)
chr1 (131-190)||(47250171-47250231)
chr1 (245-291)||(27840331-27840378)
chr1 (247-291)||(47250287-47250332)
[»] chr6 (1 HSPs)
chr6 (98-290)||(20904390-20904586)
[»] chr2 (2 HSPs)
chr2 (98-289)||(32313933-32314129)
chr2 (209-253)||(4843634-4843678)
[»] chr5 (4 HSPs)
chr5 (131-199)||(4082418-4082487)
chr5 (209-291)||(4082521-4082604)
chr5 (209-291)||(16349739-16349822)
chr5 (131-199)||(16349857-16349926)
[»] chr7 (2 HSPs)
chr7 (209-253)||(39743184-39743228)
chr7 (131-197)||(39743085-39743152)


Alignment Details
Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 362 - 502
Target Start/End: Original strand, 7988581 - 7988719
Alignment:
Q  362 acaaacaagtaacaattccttcaatgtagacattttttgtaattcaaccatgaaagctaaacaatgatttcaactttttggatgttttttgcaatcccat 461  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||    
T  7988581 acaaacaactaacaatttcttcaatgtagacattttttgtaattcaaccatgaaagcttaacaattatttcaaccttttggatgttttttgcaatcccat 7988680  T
Q  462 taaaagacaaccaaatgcataaccttatttttagattgtta 502  Q
       |  |||||||||||||||||||||| ||||||||||||    
T  7988681 gtca--acaaccaaatgcataaccttatctttagattgtta 7988719  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 148 - 291
Target Start/End: Complemental strand, 42308293 - 42308147
Alignment:
Q  148 gcagtggattatccaggatcctgattcaggg-tgtaaaaataataacttcattnnnnnnn-tcaggatatttatccttacgaactagaaagaataattgt 245  Q
    |||||||||||||||||||||||| |||||| ||||| |||||||||||||||        | |||||||||||| ||| | || | |||||||||||||    
T  42308293 gcagtggattatccaggatcctgagtcaggggtgtaataataataacttcattaaaaataattaggatatttatcattaggtaccaaaaagaataattgt 42308194  T
Q  246 attataatgaattg-aagcaatgtttttaactataaatgacccgtgc 291  Q
    |||||||| ||||| ||| |||||||||||||||| |||||||||||    
T  42308193 attataataaattgtaagtaatgtttttaactatatatgacccgtgc 42308147  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 1774967 - 1774901
Alignment:
Q  133 aagttgttgtcaattgcagtggattatccaggatcctgattcag-ggtgtaaaaataataacttcat 198  Q
    |||||||||||||||| ||||||||||| | |||||||| |||| |||||||||| |||||||||||    
T  1774967 aagttgttgtcaattgtagtggattatctaagatcctgagtcagaggtgtaaaaaaaataacttcat 1774901  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 503 - 541
Target Start/End: Original strand, 7988744 - 7988782
Alignment:
Q  503 tttgtctctcttggttttttcaagcatgattgaacttta 541  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7988744 tttgtctctcttggttttttcaagcatgattgaacttta 7988782  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 512 - 582
Target Start/End: Original strand, 7977773 - 7977845
Alignment:
Q  512 cttggttttttcaagcatgattgaactttagttattcttcct--gagagcccaccagctgttgtgtttgcctc 582  Q
    ||||||||| | |||||||||||| ||| | |||||||||||  |||||||||||||||||||| ||||||||    
T  7977773 cttggttttgttaagcatgattgatcttcacttattcttcctttgagagcccaccagctgttgtctttgcctc 7977845  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 305 - 366
Target Start/End: Original strand, 7997511 - 7997572
Alignment:
Q  305 tttgaaagaagaactgtattctagtgtcaattgctacttagagtagtatacgtttggacaaa 366  Q
    |||||||||| | || |||||||||||  ||||||| ||||||| |||||||||||||||||    
T  7997511 tttgaaagaaaacctatattctagtgttgattgctagttagagtggtatacgtttggacaaa 7997572  T

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Target: chr1 (Bit Score: 76; Significance: 8e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 99 - 291
Target Start/End: Complemental strand, 41323582 - 41323386
Alignment:
Q  99 aaagtgtgtgagtcgacgtcaactgcg-aatggttaagttgttgtcaattgcagtggattatccaggatcctgattcaggg-tgtaaaaataataacttc 196  Q
    |||||||||||  ||||||||| || | || | |||||||||||| || ||||| ||||||||||||||||||| |||||| ||||||||||||||||||    
T  41323582 aaagtgtgtgacacgacgtcaattggggaacgattaagttgttgttaactgcaggggattatccaggatcctgagtcaggggtgtaaaaataataacttc 41323483  T
Q  197 attnnnnnnn-tcaggatatttatccttacgaactagaaagaataattgtattataatgaattg-aagcaatgtttttaactataaatgacccgtgc 291  Q
    |||        | |||||||||||| ||| |||| | ||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||    
T  41323482 attaaaaaaaattaggatatttatcattaggaaccaaaaagaataattgtattataatgaattgcaagtaatgtttttaactatatatgacccgtgc 41323386  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 47250171 - 47250231
Alignment:
Q  131 ttaagttgttgtcaattgcagtggattatccaggatcctgattca-gggtgtaaaaataat 190  Q
    ||||||||||||||| ||||| ||||||||||||||||||| ||| |||||||||||||||    
T  47250171 ttaagttgttgtcaactgcagcggattatccaggatcctgagtcaggggtgtaaaaataat 47250231  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 27840378 - 27840331
Alignment:
Q  245 tattataatgaattg-aagcaatgtttttaactataaatgacccgtgc 291  Q
    ||||||||||||||| ||| |||||||| |||||||||||||||||||    
T  27840378 tattataatgaattgcaagtaatgttttaaactataaatgacccgtgc 27840331  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 47250287 - 47250332
Alignment:
Q  247 ttataatgaattg-aagcaatgtttttaactataaatgacccgtgc 291  Q
    ||||||||||||| ||| |||||||||||||||| |||||||||||    
T  47250287 ttataatgaattgcaagtaatgtttttaactatatatgacccgtgc 47250332  T

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Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 98 - 290
Target Start/End: Complemental strand, 20904586 - 20904390
Alignment:
Q  98 caaagtgtgtgagtcgacgtcaact-gcgaatggttaagttgttgtcaattgcagtggattatccaggatcctgattca-gggtgtaaaaataataactt 195  Q
    ||||||||||||  ||||||||| | | ||| | |||||||||| |||| ||||| ||||||||||||||||||| ||| ||||||||||||||||||||    
T  20904586 caaagtgtgtgacacgacgtcaattagggaacgattaagttgttatcaactgcaggggattatccaggatcctgagtcaggggtgtaaaaataataactt 20904487  T
Q  196 catt-nnnnnnntcaggatatttatccttacgaactagaaagaataattgtattataatgaattg-aagcaatgtttttaactataaatgacccgtg 290  Q
    ||||        | |||||||||||| ||| ||||   ||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||    
T  20904486 cattaaaaaaaattaggatatttatcattaggaaccgaaaagaataattgtattataatgaattgcaagtaatatttttaactatatatgacccgtg 20904390  T

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Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 98 - 289
Target Start/End: Complemental strand, 32314129 - 32313933
Alignment:
Q  98 caaagtgtgtgagtcgacgtcaactgcg-aatggttaagttgttgtcaattgcagtggattatccaggatcctgattca-gggtgtaaaaataataactt 195  Q
    |||||||||| |||||||||||| || | || | |||| ||||| |||| | ||||||||||||||||||||||| ||| |||||||||| |||||||||    
T  32314129 caaagtgtgttagtcgacgtcaattgggcaacgattaatttgttttcaacttcagtggattatccaggatcctgaatcacgggtgtaaaagtaataactt 32314030  T
Q  196 catt--nnnnnnntcaggatatttatccttacgaactagaaagaataattgtattataatgaattg-aagcaatgtttttaactataaatgacccgt 289  Q
    ||||         | |||||||||||| ||| ||||||||||||||||   ||||||||||||||| ||| | | |||||||||||| |||||||||    
T  32314029 cattaaaaaaaaattaggatatttatcattaggaactagaaagaataacactattataatgaattgcaagtattatttttaactatatatgacccgt 32313933  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 4843678 - 4843634
Alignment:
Q  209 aggatatttatccttacgaactagaaagaataattgtattataat 253  Q
    |||||||||||| ||| ||| || |||||||||||||||||||||    
T  4843678 aggatatttatcattaggaattataaagaataattgtattataat 4843634  T

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Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 4082418 - 4082487
Alignment:
Q  131 ttaagttgttgtcaattgcagtggattatccaggatcctgattca-gggtgtaaaaataataacttcatt 199  Q
    ||||||||||||||| |||||||||||||||| |||||| | ||| ||||||||||||||||||||||||    
T  4082418 ttaagttgttgtcaactgcagtggattatccaagatcctaagtcaggggtgtaaaaataataacttcatt 4082487  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 209 - 291
Target Start/End: Original strand, 4082521 - 4082604
Alignment:
Q  209 aggatatttatccttacgaactagaaagaataattgtattataatgaattg-aagcaatgtttttaactataaatgacccgtgc 291  Q
    |||||||||||| ||| |||||||||||||||||||||||||||| || ||  |  |||||||||||||||| |||||||||||    
T  4082521 aggatatttatcattaggaactagaaagaataattgtattataataaaatgccaataatgtttttaactatatatgacccgtgc 4082604  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 209 - 291
Target Start/End: Complemental strand, 16349822 - 16349739
Alignment:
Q  209 aggatatttatccttacgaactagaaagaataattgtattataatgaattg-aagcaatgtttttaactataaatgacccgtgc 291  Q
    |||||||||||| ||| |||||||||||||||||||||||||||| || ||  |  |||||||||||||||| |||||||||||    
T  16349822 aggatatttatcattaggaactagaaagaataattgtattataataaaatgccaataatgtttttaactatatatgacccgtgc 16349739  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 16349926 - 16349857
Alignment:
Q  131 ttaagttgttgtcaattgcagtggattatccaggatcctgattc-agggtgtaaaaataataacttcatt 199  Q
    ||||||||||||||| |||||||||||||||| |||||||| ||  |||||||||||| |||||||||||    
T  16349926 ttaagttgttgtcaactgcagtggattatccaagatcctgagtcgggggtgtaaaaatgataacttcatt 16349857  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 39743184 - 39743228
Alignment:
Q  209 aggatatttatccttacgaactagaaagaataattgtattataat 253  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||    
T  39743184 aggatatttatcattaggaactagaaagaataattgtattataat 39743228  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 39743085 - 39743152
Alignment:
Q  131 ttaagttgttgtcaattgcagtggattatccaggatcctgattcagg-gtgtaaaaataataacttca 197  Q
    ||||||| ||||||| ||||||  ||||||||||||||||| | |||  |||||||||||||||||||    
T  39743085 ttaagttattgtcaactgcagtaaattatccaggatcctgaattaggaatgtaaaaataataacttca 39743152  T

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