View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0619_low_20 (Length: 384)
Name: NF0619_low_20
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0619_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 8551385 - 8551759
Alignment:
| Q |
1 |
agataaaatccatttgaaattctaggcatagctgcacattccataaacacaagaacctctactttcacacttgttaccacatttcccacaatgcttcttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8551385 |
agataaaatccatttgaaattctaggcatagctgcacattccataaacacaagaacctctactttcacacttgttaccacatttcccacaatgtttcttg |
8551484 |
T |
|
| Q |
101 |
ttactcctagggttcacacatttaccttcacagcatatctttgggaaactgcatttctttccacacctcccacagttaaacatgtctatggtaaaattga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8551485 |
ttactcctagggttcacacatttaccttcacagcatatctttgggaaactgcatttctttccacacctcccacagttaaacatgtctatggtaaaattga |
8551584 |
T |
|
| Q |
201 |
cacatttgttgttgcaacaatcagggcctgcgctacctttggtatggcaaatcttgggatatttgtcacatgtgagagagattctatattgtttgcggtt |
300 |
Q |
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| T |
8551585 |
cacatttgttgttgcaacaatcaggacctgcgctacctttggtatggcaaatcttgggatatttgtcacatgtgagagagattctatattgtttgcggtt |
8551684 |
T |
|
| Q |
301 |
gaggaagtggcttgttccttgaagtgaagagtttggttcttcgttttcggaagatgttgctgatgatagtataat |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8551685 |
gaggaagtggcttgttccttgaagtgaagagtttggttcttcgttttcggaagatgttgctgatgatagtgtaat |
8551759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 367
Target Start/End: Original strand, 8532635 - 8532985
Alignment:
| Q |
17 |
aaattctaggcatagctgcacattccataaacacaagaacctctactttcacacttgttaccacatttcccacaatgcttcttgttactcctagggttca |
116 |
Q |
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| T |
8532635 |
aaattctatgcatagctgcacattccataaacacaagaacctctactttcacacttgttaccacatttcccacaatgtttcttgttactcctagggttca |
8532734 |
T |
|
| Q |
117 |
cacatttaccttcacagcatatctttgggaaactgcatttctttccacacctcccacagttaaacatgtctatggtaaaattgacacatttgttgttgca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8532735 |
cacatttaccttcacagcatatctttgggaaactgcatttctttccacacctcccacagttaaacatgtctatggtaaaattgacacatttgttgttgca |
8532834 |
T |
|
| Q |
217 |
acaatcagggcctgcgctacctttggtatggcaaatcttgggatatttgtcacatgtgagagagattctatattgtttgcggttgaggaagtggcttgtt |
316 |
Q |
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| T |
8532835 |
acaatcaggacctgcgctacctttggtatggcaaatcttgggatatttgtcacatgtgagagagattctatattgtttgcggttgaggaagtggcttgtt |
8532934 |
T |
|
| Q |
317 |
ccttgaagtgaagagtttggttcttcgttttcggaagatgttgctgatgat |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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|
| T |
8532935 |
ccttgaagtgaagagtttggttcttcgttttcagaagatgatgctgatgat |
8532985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 375
Target Start/End: Original strand, 8540896 - 8541263
Alignment:
| Q |
8 |
atccatttgaaattctaggcatagctgcacattccataaacacaagaacctctactttcacacttgttaccacatttcccacaatgcttcttgttactcc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8540896 |
atccatttgaaattctaggcatagctgcacatcccataaacacaagaacctttactgtcacacttgttaccacatttcccacaatgcttcttgttactcc |
8540995 |
T |
|
| Q |
108 |
tagggttcacacatttaccttcacagcatatctttgggaaactgcatttctttccacacctcccacagttaaacatgtctatggtaaaattgacacattt |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8540996 |
tagggttcacacatttaccttcacagcatatccttgggaaactgcatttctttccacacctcccacagttaaacatgtctatggtaaagttgacacattt |
8541095 |
T |
|
| Q |
208 |
gttgttgcaacaatcagggcctgcgctacctttggtatggcaaatcttgggatatttgtcacatgtgagagagattctatattgtttgcggttgaggaag |
307 |
Q |
| |
|
||| ||||| |||||||| |||||||||||||| ||| |||||||| || ||||||||||| | | ||| ||||||| |||||| ||||| |||||| |
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| T |
8541096 |
gttcttgcagcaatcaggacctgcgctacctttaatataacaaatctttgggtatttgtcacaggacatagatattctattttgttttcggttaaggaag |
8541195 |
T |
|
| Q |
308 |
tggcttgttccttgaagtgaagagtttggttcttcgttttcggaagatgttgctgatgatagtataat |
375 |
Q |
| |
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| ||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| |||| |
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| T |
8541196 |
tagcttgttccttgaagagaagagtttggttcatcgtttaaggaagatgttgctgatgatagtgtaat |
8541263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 375
Target Start/End: Original strand, 43246207 - 43246572
Alignment:
| Q |
7 |
aatccatttgaaattctaggcatagctgcacattccataaacacaagaacctctactttcacacttgttaccacatttcccacaatgcttcttgttactc |
106 |
Q |
| |
|
||||||| | |||||||| ||||| |||||||||||||||||||| ||||||||| | |||||||||||||||||||| ||||||||||||| ||||||| |
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|
| T |
43246207 |
aatccatatcaaattctacgcatatctgcacattccataaacacatgaacctctattgtcacacttgttaccacattttccacaatgcttctcgttactc |
43246306 |
T |
|
| Q |
107 |
ctagggttcacacatttaccttcacagcatatctttgggaaactgcatttctttccacacctcccacagttaaacatgtctatggtaaaattgacacatt |
206 |
Q |
| |
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||||| |||||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||| |||||||||||||||| ||| |||||||| | |
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| T |
43246307 |
ctaggattcacacatttaccttcacaacatatctttggaaagctacatttctttccacacctcccacaattaaacatgtctatggaaaagttgacacaat |
43246406 |
T |
|
| Q |
207 |
tgttgttgcaacaatcagggcctgcgctacctttggtatggcaaatcttgggatatttgtcacatgtgagagagattctatattgtttgcggttgaggaa |
306 |
Q |
| |
|
|||||||||| |||| |||||||| ||||||||| ||| ||||||||| |||||||||| ||||| | ||||||||| | |||||| ||| ||||| |
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| T |
43246407 |
tgttgttgcagcaattagggcctggactacctttgatattgcaaatctttggatatttgttacatgacacagagattctgttttgtttccgggaaaggaa |
43246506 |
T |
|
| Q |
307 |
gtggcttgttccttgaagtgaagagtttggttcttcgttttcggaagatgttgctgatgatagtataat |
375 |
Q |
| |
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||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| |||| |
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|
| T |
43246507 |
gtggcttgttccttggag---agagtttggttcttcgtttttagaagatgttgctgatgatagtgtaat |
43246572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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