View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0619_low_22 (Length: 363)
Name: NF0619_low_22
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0619_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 9 - 354
Target Start/End: Complemental strand, 52296719 - 52296374
Alignment:
| Q |
9 |
gaagaaacgacgaaggggtctaggagggcctctgttagactgaaaaggttgagaagaggattggttccaggatactttgccattactaccagcagttatt |
108 |
Q |
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| T |
52296719 |
gaagaaacgacgaaggggtctaggagggcctctgttagactgaaaaggttgagaagaggattggttccaggatactttgccattactaccagcagttatt |
52296620 |
T |
|
| Q |
109 |
ttaaaaccagagactaccaattccaagcaccataaatctggattgttttgccatagcacgaaacctcctacttcagctttgcctcttgaatgaacgctgt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52296619 |
ttaaaaccagagactaccaattccaagcaccataaatctggattgttttgccatagcacgaaacctcctacttcagctttgcctcttgaatgaacgctgt |
52296520 |
T |
|
| Q |
209 |
tatcatcggcaccatgacgcatctctgaaccatgtattctaacttctcccattgcatacatgttttgcaatgaattcaatgcaccttgtccaccggttgc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52296519 |
tatcatcggcaccatgacgcatctctgaaccatgtattctaacttctcccattgcatacatgttttgcaatgaattcaatgcaccttgtccaccggttgc |
52296420 |
T |
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| Q |
309 |
tgccacatattgttgcactatgtatttcccaattgaatctctctgc |
354 |
Q |
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| T |
52296419 |
tgccacatattgttgcactatgtatttcccaattgaatctctctgc |
52296374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 6826420 - 6826347
Alignment:
| Q |
112 |
aaaccagagactaccaattccaagcaccataaatctggattgttttgccatagcacgaaacctcctacttcagc |
185 |
Q |
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||||||||||| |||||||| ||| ||| ||||||||||| |||||||| | || |||||||| |||||||| |
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| T |
6826420 |
aaaccagagacaaccaattcaaagtgccacaaatctggattcttttgccacaatacaaaacctcccacttcagc |
6826347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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