View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0619_low_27 (Length: 328)

Name: NF0619_low_27
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0619_low_27
NF0619_low_27
[»] chr6 (8 HSPs)
chr6 (76-181)||(21350934-21351039)
chr6 (76-121)||(15997539-15997584)
chr6 (76-121)||(18970659-18970704)
chr6 (77-138)||(20508611-20508672)
chr6 (76-120)||(20756414-20756458)
chr6 (83-121)||(4279092-4279130)
chr6 (83-121)||(4284353-4284391)
chr6 (79-121)||(32261204-32261246)
[»] chr7 (7 HSPs)
chr7 (114-189)||(32498049-32498124)
chr7 (76-121)||(19068464-19068509)
chr7 (259-294)||(32498194-32498229)
chr7 (77-121)||(45432967-45433011)
chr7 (77-121)||(19069255-19069299)
chr7 (130-166)||(34351041-34351077)
chr7 (81-121)||(43448523-43448563)
[»] scaffold1370 (1 HSPs)
scaffold1370 (77-121)||(202-246)
[»] scaffold0285 (1 HSPs)
scaffold0285 (76-121)||(17543-17588)
[»] chr8 (9 HSPs)
chr8 (76-121)||(37550998-37551043)
chr8 (77-120)||(28540372-28540415)
chr8 (76-121)||(36697681-36697726)
chr8 (77-121)||(16723683-16723727)
chr8 (81-121)||(37811173-37811213)
chr8 (77-121)||(9044186-9044230)
chr8 (77-121)||(23546145-23546189)
chr8 (77-121)||(23546910-23546954)
chr8 (77-121)||(24287618-24287662)
[»] chr4 (6 HSPs)
chr4 (79-166)||(39831985-39832072)
chr4 (77-138)||(19638103-19638164)
chr4 (77-121)||(43428476-43428520)
chr4 (81-121)||(49574748-49574788)
chr4 (77-120)||(21436558-21436601)
chr4 (76-120)||(17736580-17736624)
[»] chr1 (4 HSPs)
chr1 (114-165)||(35123381-35123432)
chr1 (76-121)||(15601472-15601517)
chr1 (80-121)||(49359642-49359683)
chr1 (82-146)||(36391334-36391398)
[»] chr5 (4 HSPs)
chr5 (77-138)||(14098496-14098557)
chr5 (79-120)||(26016218-26016259)
chr5 (76-121)||(35424265-35424310)
chr5 (81-121)||(12696487-12696527)
[»] chr3 (8 HSPs)
chr3 (80-121)||(29749339-29749380)
chr3 (76-121)||(54516961-54517006)
chr3 (81-120)||(54524693-54524732)
chr3 (79-113)||(103752-103786)
chr3 (81-146)||(47393897-47393962)
chr3 (81-121)||(20111907-20111947)
chr3 (77-121)||(36244154-36244198)
chr3 (77-121)||(40934834-40934878)
[»] chr2 (6 HSPs)
chr2 (79-120)||(25616852-25616893)
chr2 (77-121)||(30266321-30266365)
chr2 (81-121)||(30784880-30784920)
chr2 (77-120)||(41768798-41768841)
chr2 (77-107)||(37151954-37151984)
chr2 (81-121)||(6257771-6257811)
[»] scaffold0159 (1 HSPs)
scaffold0159 (77-121)||(28154-28198)


Alignment Details
Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 76 - 181
Target Start/End: Complemental strand, 21351039 - 21350934
Alignment:
Q  76 gagggcatttcaaatgagaggactttttaaataagaggatgagaggcttcaatttcaaccattggatcaaaatgtatggctgagattaaaactccaaatt 175  Q
    ||||| |||||||||||||||||||||||||| || ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||  || ||||    
T  21351039 gaggggatttcaaatgagaggactttttaaatgagcggatgagagacttcaatctcaaccattggatcaaaatgtatggctgagattaaaaaccccaatt 21350940  T
Q  176 taaaaa 181  Q
    ||||||    
T  21350939 taaaaa 21350934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 15997584 - 15997539
Alignment:
Q  76 gagggcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    |||||||||||||||||||||| ||||||||| ||||| |||||||    
T  15997584 gagggcatttcaaatgagaggagtttttaaatgagagggtgagagg 15997539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 18970704 - 18970659
Alignment:
Q  76 gagggcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    ||||||||||||||| ||||||||||| |||| |||||||||||||    
T  18970704 gagggcatttcaaataagaggacttttaaaatgagaggatgagagg 18970659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 20508611 - 20508672
Alignment:
Q  77 agggcatttcaaatgagaggactttttaaataagaggatgagaggcttcaatttcaaccatt 138  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||| || |||  ||||||||    
T  20508611 agggcatttcaaatgagatgactttttaaatgagagggtgagaggattaaatcacaaccatt 20508672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 20756458 - 20756414
Alignment:
Q  76 gagggcatttcaaatgagaggactttttaaataagaggatgagag 120  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||||    
T  20756458 gagggcatttcaaatgagaggagtttttaaatgagagggtgagag 20756414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 4279092 - 4279130
Alignment:
Q  83 tttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    ||||||||||||||||||||||||| ||||| |||||||    
T  4279092 tttcaaatgagaggactttttaaatgagagggtgagagg 4279130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 4284391 - 4284353
Alignment:
Q  83 tttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    ||||||||||||||||||||||||| ||||| |||||||    
T  4284391 tttcaaatgagaggactttttaaatgagagggtgagagg 4284353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 32261246 - 32261204
Alignment:
Q  79 ggcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    |||||||||||||||| |||||||||||| ||||| |||||||    
T  32261246 ggcatttcaaatgagatgactttttaaatgagagggtgagagg 32261204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 32498049 - 32498124
Alignment:
Q  114 atgagaggcttcaatttcaaccattggatcaaaatgtatggctgagattaaaactccaaatttaaaaattaacgtg 189  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32498049 atgagaggcttcaatctcaaccattggatcaaaatgtatggctgagattaaaactccaaatttaaaaagtaacgtg 32498124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 19068464 - 19068509
Alignment:
Q  76 gagggcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||    
T  19068464 gagggcatttcaaatgagaggactttttaaatgagagggtgagagg 19068509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 32498194 - 32498229
Alignment:
Q  259 accattccaaattccatcgaatacaccatcctcctt 294  Q
    ||||||||||||||||||||||||||||||||||||    
T  32498194 accattccaaattccatcgaatacaccatcctcctt 32498229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 45433011 - 45432967
Alignment:
Q  77 agggcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    |||||||||||| |||||||| ||||||||| |||||||||||||    
T  45433011 agggcatttcaagtgagaggattttttaaatgagaggatgagagg 45432967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 19069299 - 19069255
Alignment:
Q  77 agggcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    ||||||||||||| |||| |||||||||||| ||||| |||||||    
T  19069299 agggcatttcaaaagagatgactttttaaatgagagggtgagagg 19069255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 34351077 - 34351041
Alignment:
Q  130 tcaaccattggatcaaaatgtatggctgagattaaaa 166  Q
    |||||||| |||||||| |||||||||||||||||||    
T  34351077 tcaaccatcggatcaaagtgtatggctgagattaaaa 34351041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 43448563 - 43448523
Alignment:
Q  81 catttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    |||||||||||||||||| |||||||| ||||| |||||||    
T  43448563 catttcaaatgagaggaccttttaaatgagagggtgagagg 43448523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1370 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 202 - 246
Alignment:
Q  77 agggcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  202 agggcatttcaaatgagaggactttttaaatgagaggatgagagg 246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 17588 - 17543
Alignment:
Q  76 gagggcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||    
T  17588 gagggcatttcaaatgagaggattttttaaatgagaggatgagagg 17543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 37550998 - 37551043
Alignment:
Q  76 gagggcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||    
T  37550998 gagggcatttcaaatgagagggctttttaaatgagaggatgagagg 37551043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 28540415 - 28540372
Alignment:
Q  77 agggcatttcaaatgagaggactttttaaataagaggatgagag 120  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  28540415 agggcatttcaaatgagaggacttttaaaatgagaggatgagag 28540372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 36697681 - 36697726
Alignment:
Q  76 gagggcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    |||| ||||||||||||||||||||||||||| ||||| |||||||    
T  36697681 gaggacatttcaaatgagaggactttttaaatgagagggtgagagg 36697726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 16723683 - 16723727
Alignment:
Q  77 agggcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    |||||||||||||||||||||||||| |||| ||||| |||||||    
T  16723683 agggcatttcaaatgagaggacttttaaaatgagagggtgagagg 16723727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 37811173 - 37811213
Alignment:
Q  81 catttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    |||||||||||||| |||||||||||| |||||||||||||    
T  37811173 catttcaaatgagatgactttttaaatgagaggatgagagg 37811213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 9044186 - 9044230
Alignment:
Q  77 agggcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    ||||||||| |||||||| |||||||||||| ||||| |||||||    
T  9044186 agggcattttaaatgagatgactttttaaatgagagggtgagagg 9044230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 23546145 - 23546189
Alignment:
Q  77 agggcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    |||||||||||||||||||| | |||||||| ||||| |||||||    
T  23546145 agggcatttcaaatgagagggcattttaaatgagagggtgagagg 23546189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 23546954 - 23546910
Alignment:
Q  77 agggcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    |||||||||||||||||||  |||||||||| ||||| |||||||    
T  23546954 agggcatttcaaatgagagagctttttaaatgagagggtgagagg 23546910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 24287662 - 24287618
Alignment:
Q  77 agggcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    ||||||||||||||||||||  ||||||||| ||||| |||||||    
T  24287662 agggcatttcaaatgagagggttttttaaatgagagggtgagagg 24287618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 166
Target Start/End: Complemental strand, 39832072 - 39831985
Alignment:
Q  79 ggcatttcaaatgagaggactttttaaataagaggatgagaggcttcaatttcaaccattggatcaaaatgtatggctgagattaaaa 166  Q
    |||||||||| |||||| ||||||||||| |||||||||||||  ||| |   ||||||| ||||||| ||||||| | |||||||||    
T  39832072 ggcatttcaagtgagagcactttttaaatgagaggatgagaggactcattaataaccattagatcaaattgtatggatcagattaaaa 39831985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 19638103 - 19638164
Alignment:
Q  77 agggcatttcaaatgagaggactttttaaataagaggatgagaggcttcaatttcaaccatt 138  Q
    ||||||||||||||||||||| ||||||||| ||||| ||||||| || |||  ||||||||    
T  19638103 agggcatttcaaatgagaggaatttttaaatgagagggtgagaggattaaatcacaaccatt 19638164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 43428476 - 43428520
Alignment:
Q  77 agggcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    ||||||||| ||||||||||||||||||||| ||||| |||||||    
T  43428476 agggcattttaaatgagaggactttttaaatgagagggtgagagg 43428520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 49574788 - 49574748
Alignment:
Q  81 catttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    ||||||||||||||||||||||||||| ||||| |||||||    
T  49574788 catttcaaatgagaggactttttaaatgagagggtgagagg 49574748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 21436558 - 21436601
Alignment:
Q  77 agggcatttcaaatgagaggactttttaaataagaggatgagag 120  Q
    ||||||||||||||||||||| ||||||||| ||||| ||||||    
T  21436558 agggcatttcaaatgagaggagtttttaaatgagagggtgagag 21436601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 17736580 - 17736624
Alignment:
Q  76 gagggcatttcaaatgagaggactttttaaataagaggatgagag 120  Q
    |||| ||||||||||||||||| |||| |||| ||||||||||||    
T  17736580 gaggacatttcaaatgagaggagttttaaaatgagaggatgagag 17736624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 165
Target Start/End: Original strand, 35123381 - 35123432
Alignment:
Q  114 atgagaggcttcaatttcaaccattggatcaaaatgtatggctgagattaaa 165  Q
    |||||||| |||||| |||||||||| || ||||||||||||||||||||||    
T  35123381 atgagagggttcaatctcaaccattgaataaaaatgtatggctgagattaaa 35123432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 15601517 - 15601472
Alignment:
Q  76 gagggcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    |||||||| |||| ||||||| |||||||||| |||||||||||||    
T  15601517 gagggcatatcaagtgagagggctttttaaatgagaggatgagagg 15601472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 49359642 - 49359683
Alignment:
Q  80 gcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    |||||||||||||||||| ||||||||| ||||| |||||||    
T  49359642 gcatttcaaatgagaggagtttttaaatgagagggtgagagg 49359683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 36391398 - 36391334
Alignment:
Q  82 atttcaaatgagaggactttttaaataagaggatgagaggcttcaatttcaaccattggatcaaa 146  Q
    |||||||||||||||||||| ||||| ||||| ||||||| || |||  ||||| || |||||||    
T  36391398 atttcaaatgagaggactttataaatgagagggtgagaggattaaatcacaaccgttagatcaaa 36391334  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 14098496 - 14098557
Alignment:
Q  77 agggcatttcaaatgagaggactttttaaataagaggatgagaggcttcaatttcaaccatt 138  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||| || |||  ||||||||    
T  14098496 agggcattttaaatgagaggactttttaaatgagagggtgagaggattaaatcacaaccatt 14098557  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 26016259 - 26016218
Alignment:
Q  79 ggcatttcaaatgagaggactttttaaataagaggatgagag 120  Q
    ||||||||||||||||||||||||||||| |||| |||||||    
T  26016259 ggcatttcaaatgagaggactttttaaatgagagaatgagag 26016218  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 35424265 - 35424310
Alignment:
Q  76 gagggcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    ||||||||||||||||||||||||||| |||| ||||| |||||||    
T  35424265 gagggcatttcaaatgagaggacttttaaaatgagagggtgagagg 35424310  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 12696487 - 12696527
Alignment:
Q  81 catttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    |||||||||||||| |||||||||||| ||||| |||||||    
T  12696487 catttcaaatgagatgactttttaaatgagagggtgagagg 12696527  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 29749380 - 29749339
Alignment:
Q  80 gcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    |||||||||||||||||||||||||||| ||||| |||||||    
T  29749380 gcatttcaaatgagaggactttttaaatgagagggtgagagg 29749339  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 54516961 - 54517006
Alignment:
Q  76 gagggcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    |||||||||||||||||||||| ||||||||| ||||| |||||||    
T  54516961 gagggcatttcaaatgagaggagtttttaaatgagagggtgagagg 54517006  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 54524732 - 54524693
Alignment:
Q  81 catttcaaatgagaggactttttaaataagaggatgagag 120  Q
    |||||||||||||||||||||| |||| ||||||||||||    
T  54524732 catttcaaatgagaggacttttaaaatgagaggatgagag 54524693  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 103752 - 103786
Alignment:
Q  79 ggcatttcaaatgagaggactttttaaataagagg 113  Q
    |||||||||||||||||||||||| ||||||||||    
T  103752 ggcatttcaaatgagaggacttttaaaataagagg 103786  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 47393897 - 47393962
Alignment:
Q  81 catttcaaatgagaggactttttaaataagaggatgagaggcttcaatttcaaccattggatcaaa 146  Q
    ||||||||||||||||||||| ||||| ||||| ||||||| || |||  ||||| || |||||||    
T  47393897 catttcaaatgagaggactttataaatgagagggtgagaggattaaatcacaaccgttagatcaaa 47393962  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 20111947 - 20111907
Alignment:
Q  81 catttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    |||||||||| ||||||||||| |||| |||||||||||||    
T  20111947 catttcaaataagaggacttttaaaatgagaggatgagagg 20111907  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 36244198 - 36244154
Alignment:
Q  77 agggcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    |||||||||||||||||| || ||||||||| ||||| |||||||    
T  36244198 agggcatttcaaatgagatgattttttaaatgagagggtgagagg 36244154  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 40934878 - 40934834
Alignment:
Q  77 agggcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    |||||||||||||| ||||||| |||||||| ||||| |||||||    
T  40934878 agggcatttcaaataagaggacattttaaatgagagggtgagagg 40934834  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 25616852 - 25616893
Alignment:
Q  79 ggcatttcaaatgagaggactttttaaataagaggatgagag 120  Q
    ||||||||||||||||||||||||||||| ||||| ||||||    
T  25616852 ggcatttcaaatgagaggactttttaaatgagagggtgagag 25616893  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 30266321 - 30266365
Alignment:
Q  77 agggcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    ||||||||||||||||||| ||||||||||| ||||| |||||||    
T  30266321 agggcatttcaaatgagagcactttttaaatgagagggtgagagg 30266365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 30784880 - 30784920
Alignment:
Q  81 catttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    ||||||||||||||||||||||||||| ||||| |||||||    
T  30784880 catttcaaatgagaggactttttaaatgagagggtgagagg 30784920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 41768798 - 41768841
Alignment:
Q  77 agggcatttcaaatgagaggactttttaaataagaggatgagag 120  Q
    |||||||||||| |||||| ||||||||||| ||||||||||||    
T  41768798 agggcatttcaagtgagagcactttttaaatgagaggatgagag 41768841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 107
Target Start/End: Original strand, 37151954 - 37151984
Alignment:
Q  77 agggcatttcaaatgagaggactttttaaat 107  Q
    |||||||||||||||||||||||||||||||    
T  37151954 agggcatttcaaatgagaggactttttaaat 37151984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 6257811 - 6257771
Alignment:
Q  81 catttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    ||||||||||||||||||||||||||| ||| | |||||||    
T  6257811 catttcaaatgagaggactttttaaatgagaaggtgagagg 6257771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 28154 - 28198
Alignment:
Q  77 agggcatttcaaatgagaggactttttaaataagaggatgagagg 121  Q
    |||||||||||||| |||||||||||||||| ||||| |||||||    
T  28154 agggcatttcaaataagaggactttttaaatgagagggtgagagg 28198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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