View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0619_low_28 (Length: 318)
Name: NF0619_low_28
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0619_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 27003883 - 27003832
Alignment:
| Q |
7 |
caactaaggagatgcataaatatctatgattcgcatataatctatgcaacag |
58 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27003883 |
caactaaggagatgcataaatatctatgattcgcatataatctatgcaacag |
27003832 |
T |
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Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 35537360 - 35537411
Alignment:
| Q |
7 |
caactaaggagatgcataaatatctatgattcgcatataatctatgcaacag |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35537360 |
caactaaggagatgcataaatatctatgattcgcatataatctatgcaacag |
35537411 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 45860115 - 45860071
Alignment:
| Q |
14 |
ggagatgcataaatatctatgattcgcatataatctatgcaacag |
58 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
45860115 |
ggagatgcataaatatatatgattctcatataatctatgcaacag |
45860071 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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