View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0619_low_3 (Length: 597)
Name: NF0619_low_3
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0619_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 6 - 574
Target Start/End: Complemental strand, 43654352 - 43653784
Alignment:
| Q |
6 |
ataaatacttgcttgtgtgtacatgaattcaaataatccacgcacaagcaaagtcgtatccaaaaaataagtgattcaaagtttctgtagcctgcaacac |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
43654352 |
ataaatacttgcttgtgtgtacatgaattcaaataatccacgcacaagcaaagtcgcatccgaaaaataagtgattcaaagtttccgtagcctgcaacac |
43654253 |
T |
|
| Q |
106 |
acattcatattttgttaaagtatatcgcgttgaattatagattatcctttgtagggattcggttctgaagaagtcatcaacaaaaatagataccttcaat |
205 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43654252 |
acattcatattttgttaaagtataccacgttgaattatagattatcctttgtagggattcggttctgaagaagccatcaacaaaaatagataccttcaat |
43654153 |
T |
|
| Q |
206 |
tatataagattgtaaattttttataacaactaactgtaattgttcaattagaattgaatataaacacaatttagtttctttctcattttgaatataatta |
305 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43654152 |
tatatatgattgtaaattttttataacaactaactgtaattgttcaattagaattgaatataaacacaatttagtttctttctcattttgaatataatta |
43654053 |
T |
|
| Q |
306 |
gaggagattcaaaca-nnnnnnnggggaagcatgtgtgtggtgctcttttctattcaaggaggtgtgtatggtaagaaacgcagctcatggtagggattg |
404 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43654052 |
gaggagattcaaacattttttttggggaagcatgtgtgtggtgctcttttctattcaaggaggtgtgtatggtaagaaacgcagctcatggtagggatt- |
43653954 |
T |
|
| Q |
405 |
gggggaagaaacaagagaggcaagtactatctggcccaaccaactagcatccctacacattatcattctcaattcactatgattagatttacaatattat |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43653953 |
gggggaagaaacaagagaggcaagtactatctggcccaaccaactagcatccctacacattatcattctcaattcactatgattagatttacaatattat |
43653854 |
T |
|
| Q |
505 |
tacctttaaatgcaatgattttatagttgtcacaacttttatatttgttacagatggtaatcgtcctgct |
574 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43653853 |
tacctttaaatgcaatgattttatagttgtcacaacttttatatttgttacagatggtaatcgtcctgct |
43653784 |
T |
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