View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0619_low_30 (Length: 311)
Name: NF0619_low_30
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0619_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 30 - 301
Target Start/End: Original strand, 8876713 - 8876985
Alignment:
| Q |
30 |
ctttatagtgtagggaaccatttacattgcataggacaatttgtttgggtgaatcaagatgctatagaggtagtttgctgatatgcacagtttatgtgct |
129 |
Q |
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| T |
8876713 |
ctttgtagtgtagggaaccatttacaatgcataggacaatttgtttgggtgaatcaagatgctatagaggtagtttgctgatatgcacagtttatgtgct |
8876812 |
T |
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| Q |
130 |
tgctgacatgttaggaaccaaatgctgtctacaaaagatatatgtatgtgactaatacttatacatatattgcaga-nnnnnnngactgcttttgccaat |
228 |
Q |
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| T |
8876813 |
tgctgacatgttaggaaccaaatgctgtctacaaaagatatatgtatgtgactaatacttatacatatattgcagattttttttgactgcttttgccaat |
8876912 |
T |
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| Q |
229 |
gcatttcatgctctacagctactcaaaattcctgaatccaggttagactatgatgtcattcataatgcctttg |
301 |
Q |
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| T |
8876913 |
gcatttcatgctctacagctactcaaaattcctgaatccaggttagactatgatgtcattcataatgcctttg |
8876985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 30 - 299
Target Start/End: Complemental strand, 9394247 - 9393978
Alignment:
| Q |
30 |
ctttatagtgtagggaaccatttacattgcataggacaatttgtttgggtgaatcaaga---tgctatagaggtagtttgctgatatgcacagtttatgt |
126 |
Q |
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| T |
9394247 |
ctttatagtgcagggaaccatttacaatgcatattacaatttgtttgggtgaatcaagaagatgctatagaggtagtttgctgatatgcacaatttatgt |
9394148 |
T |
|
| Q |
127 |
gcttgctgacatgttaggaaccaaatgctgtctacaaaagatatatgtatgtgactaatacttatacatatattgcagannnnnnngactgcttttgcca |
226 |
Q |
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| T |
9394147 |
gcttgctgatatgataggaaccaaatgctgtctacaaaagatatatgtatgtgactaatacttatacatatattgtagatttta---actgcttttgcca |
9394051 |
T |
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| Q |
227 |
atgcatttcatgctctacagctactcaaaattcctgaatccaggttagactatgatgtcattcataatgcctt |
299 |
Q |
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|||||| |||||| ||||||| ||||||| |||||||||||||||||||||||| ||| |||| ||||||||| |
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| T |
9394050 |
atgcatctcatgcactacagccactcaaagttcctgaatccaggttagactatgttgttattcttaatgcctt |
9393978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 275
Target Start/End: Complemental strand, 336224 - 336119
Alignment:
| Q |
169 |
atatgtatgtgactaatacttatacatatatt--gcagannnnnnngactgcttttgccaatgcatttcatgctctacagctactcaaaattcctgaatc |
266 |
Q |
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|||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||| || |
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| T |
336224 |
atatgtatgtgactaatactcctacatatattttgcagatttt---gactgcttttgccaatgcatttcatgctctacagccactcaaagttcctggatt |
336128 |
T |
|
| Q |
267 |
caggttaga |
275 |
Q |
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||||||||| |
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| T |
336127 |
caggttaga |
336119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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