View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0619_low_32 (Length: 308)

Name: NF0619_low_32
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0619_low_32
NF0619_low_32
[»] chr2 (26 HSPs)
chr2 (1-188)||(39458617-39458804)
chr2 (19-138)||(39390455-39390574)
chr2 (18-144)||(39458802-39458928)
chr2 (20-137)||(39603246-39603363)
chr2 (19-144)||(39222394-39222519)
chr2 (19-137)||(39390246-39390364)
chr2 (1-127)||(39603017-39603143)
chr2 (15-119)||(39473823-39473927)
chr2 (48-139)||(39137399-39137490)
chr2 (18-89)||(39451794-39451865)
chr2 (20-139)||(39389614-39389733)
chr2 (90-137)||(39390918-39390965)
chr2 (105-175)||(38792568-38792638)
chr2 (83-137)||(39192751-39192805)
chr2 (83-137)||(39198431-39198485)
chr2 (89-139)||(39221309-39221359)
chr2 (103-144)||(39152240-39152281)
chr2 (89-133)||(39136777-39136821)
chr2 (18-70)||(39221931-39221983)
chr2 (18-70)||(39222141-39222193)
chr2 (112-184)||(39222319-39222391)
chr2 (89-139)||(39415895-39415945)
chr2 (105-139)||(39422183-39422217)
chr2 (115-184)||(39473926-39473995)
chr2 (21-66)||(44895653-44895698)
chr2 (112-184)||(39390577-39390649)
[»] chr5 (2 HSPs)
chr5 (18-120)||(17059296-17059398)
chr5 (90-141)||(33560468-33560519)
[»] chr7 (2 HSPs)
chr7 (31-139)||(19807332-19807440)
chr7 (89-133)||(19807138-19807182)


Alignment Details
Target: chr2 (Bit Score: 176; Significance: 8e-95; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 39458617 - 39458804
Alignment:
1 gagattttgaagagcaggtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagttcgaatcacaacagaggcaattgaaaggaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
39458617 gagattttgaagagcaggtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagttcgtatcacaacagaggcaattgaaaggaca 39458716  T
101 agttaaggaacttgagtctaaagagaagcaacttgatggtcgaggggaagaacatgaatcaaaaaagagagaattcgaaggccatgtg 188  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
39458717 agttaaggaacttgagtctaaagagaagcaacttgatggccgaggggaagtacatgaatcaaaaaagagagaattcgaaggccatgtg 39458804  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 39390574 - 39390455
Alignment:
19 tgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagttcgaatcacaacagaggcaattgaaaggacaagttaaggaacttgagtc 118  Q
    ||||||| ||||||||| ||| ||||  |||||||||||||||||||||| || || || || |||||||||||||||||||||||||||||||||||||    
39390574 tgaaggaactggaatctaaaaggaagcattttgaaagccaagtggaggagctcaaaacagaagagaggcaattgaaaggacaagttaaggaacttgagtc 39390475  T
119 taaagagaagcaacttgatg 138  Q
    ||||||||||||| ||||||    
39390474 taaagagaagcaatttgatg 39390455  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 39458802 - 39458928
Alignment:
18 gtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagttcgaatcacaacagaggcaattgaaaggacaagttaaggaacttgagt 117  Q
    ||||||||||| |||||| |||||||  |||||||||| |||||||||||| || ||||| || |||| |||||||||||||||||||||||||||||||    
39458802 gtgaaggagctcgaatctaaaaagaattgttttgaaagtcaagtggaggagctcaaatcaaaagagagacaattgaaaggacaagttaaggaacttgagt 39458901  T
118 ctaaagagaagcaacttgatggtcgag 144  Q
     |||||||||| || ||||||||||||    
39458902 gtaaagagaagaaaattgatggtcgag 39458928  T

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Target: chr2; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 39603246 - 39603363
Alignment:
20 gaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagttcgaatcacaacagaggcaattgaaaggacaagttaaggaacttgagtct 119  Q
    |||||||||||||||| ||||||||  |||||||||||||||||||||||||  |||| ||| | |||||||||||||||||||||||||||||||||      
39603246 gaaggagctggaatctaaaaagaagcattttgaaagccaagtggaggagttcacatcaaaactgtggcaattgaaaggacaagttaaggaacttgagtac 39603345  T
120 aaagagaagcaacttgat 137  Q
    |||||||||||| |||||    
39603346 aaagagaagcaatttgat 39603363  T

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Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 39222394 - 39222519
Alignment:
19 tgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagttcgaatcacaacagaggcaattgaaaggacaagttaaggaacttgagtc 118  Q
    ||||||| ||||||||  ||||||||  ||||||||  ||||||||||||||| ||||| || ||||||||||||||||||| ||||||||| |||||||    
39222394 tgaaggaactggaatccaaaaagaagcattttgaaaatcaagtggaggagttcaaatcaaaagagaggcaattgaaaggacaggttaaggaaattgagtc 39222493  T
119 taaagagaagcaacttgatggtcgag 144  Q
    |||||||||| || ||||||| ||||    
39222494 taaagagaagaaatttgatggccgag 39222519  T

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Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 39390364 - 39390246
Alignment:
19 tgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagttcgaatcacaacagaggcaattgaaaggacaagttaaggaacttgagtc 118  Q
    ||||||| ||||||||| ||| ||||  |||||||||||||||||||||| || || || ||  || ||||||||||||| |||||||||||||||||||    
39390364 tgaaggaactggaatctaaaaggaagcattttgaaagccaagtggaggagctcaaaacaaaagtgaagcaattgaaaggagaagttaaggaacttgagtc 39390265  T
119 taaagagaagcaacttgat 137  Q
    || ||||| |||| |||||    
39390264 tagagagatgcaatttgat 39390246  T

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Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 39603017 - 39603143
Alignment:
1 gagattttgaagagcaggtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagttcgaatcacaacagaggcaattgaaaggaca 100  Q
    |||| |||||||  || |||| ||||||||||||| ||||||||  |||||||||||| ||||||||| ||  |||| | | | ||||||||||||||||    
39603017 gagagtttgaaggccaagtgacggagctggaatctaaaaagaagcattttgaaagccatgtggaggagctcacatcaaatctgtggcaattgaaaggaca 39603116  T
101 agttaaggaacttgagtctaaagagaa 127  Q
     |||||||||||||| || ||||||||    
39603117 ggttaaggaacttgaatccaaagagaa 39603143  T

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Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 39473927 - 39473823
Alignment:
15 caggtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagttcgaatcacaacagaggcaattgaaaggacaagttaaggaacttg 114  Q
    |||||||||| ||| |||||| ||||||||| ||| ||||  |||||||||||  || ||||| || | || ||||||||||||||||||||||||||||    
39473927 caggtgaaggggctagaatctaaaaagaagaatttagaaatgcaagtggaggatctcaaatcagaagaaagacaattgaaaggacaagttaaggaacttg 39473828  T
115 agtct 119  Q
    |||||    
39473827 agtct 39473823  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 39137399 - 39137490
Alignment:
48 tttgaaagccaagtggaggagttcgaatcacaacagaggcaattgaaaggacaagttaaggaacttgagtctaaagagaagcaacttgatgg 139  Q
    ||||||||||||||||||||| |  ||||| || |||||||     |||||||| |||| ||||||||||||||||||||| ||||||||||    
39137399 tttgaaagccaagtggaggagcttaaatcaaaagagaggcatagtcaaggacaatttaaagaacttgagtctaaagagaagaaacttgatgg 39137490  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 39451794 - 39451865
Alignment:
18 gtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagttcgaatcacaacagaggcaa 89  Q
    |||||||| ||||||||| ||||||||  |||||||||||||||||||||| || ||||| || ||||||||    
39451794 gtgaaggatctggaatctaaaaagaagcattttgaaagccaagtggaggagctcaaatcaaaagagaggcaa 39451865  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 39389733 - 39389614
Alignment:
20 gaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagttcgaatcacaacagaggcaattgaaaggacaagttaaggaacttgagtct 119  Q
    |||||||||||||||| ||||||||  ||| ||||||    ||| |||| || ||||| ||  ||||| |||||||| |||| || ||||| |||| ||     
39389733 gaaggagctggaatctaaaaagaagcatttcgaaagcatgatggtggagctcaaatcaaaattgaggctattgaaagtacaatttcaggaatttgactcc 39389634  T
120 aaagagaagcaacttgatgg 139  Q
    ||||||||||||||||||||    
39389633 aaagagaagcaacttgatgg 39389614  T

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Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 39390965 - 39390918
Alignment:
90 ttgaaaggacaagttaaggaacttgagtctaaagagaagcaacttgat 137  Q
    ||||||| ||||||| |||||||||| |||||||||||||||||||||    
39390965 ttgaaagaacaagttgaggaacttgactctaaagagaagcaacttgat 39390918  T

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Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 38792568 - 38792638
Alignment:
105 aaggaacttgagtctaaagagaagcaacttgatggtcgaggggaagaacatgaatcaaaaaagagagaatt 175  Q
    |||||||||||||| ||||||||||||| ||| || |  | ||| || |||||||||||||||||||||||    
38792568 aaggaacttgagtcgaaagagaagcaacatgaaggccaggtggaggagcatgaatcaaaaaagagagaatt 38792638  T

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Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 39192805 - 39192751
Alignment:
83 gaggcaattgaaaggacaagttaaggaacttgagtctaaagagaagcaacttgat 137  Q
    ||||| ||||| |||||||||||||||| || | |||||||||||||||||||||    
39192805 gaggccattgataggacaagttaaggaattttactctaaagagaagcaacttgat 39192751  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 39198485 - 39198431
Alignment:
83 gaggcaattgaaaggacaagttaaggaacttgagtctaaagagaagcaacttgat 137  Q
    ||||| ||||| |||||||||||||||| || | |||||||||||||||||||||    
39198485 gaggccattgataggacaagttaaggaattttactctaaagagaagcaacttgat 39198431  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 39221309 - 39221359
Alignment:
89 attgaaaggacaagttaaggaacttgagtctaaagagaagcaacttgatgg 139  Q
    |||||||||||| ||| |||||||||| || ||||||||||||||||||||    
39221309 attgaaaggacaggttgaggaacttgactccaaagagaagcaacttgatgg 39221359  T

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Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 39152240 - 39152281
Alignment:
103 ttaaggaacttgagtctaaagagaagcaacttgatggtcgag 144  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
39152240 ttaaggaacttgagtctaaagagaaacaacttgatggacgag 39152281  T

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Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 39136777 - 39136821
Alignment:
89 attgaaaggacaagttaaggaacttgagtctaaagagaagcaact 133  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||    
39136777 attgaaaggacaaattaaggaacttgcctctaaagagaagcaact 39136821  T

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Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 39221931 - 39221983
Alignment:
18 gtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagtt 70  Q
    |||||||||||||||||| ||||||||   ||||||||||||||| |||||||    
39221931 gtgaaggagctggaatctaaaaagaagctgtttgaaagccaagtgaaggagtt 39221983  T

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Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 39222141 - 39222193
Alignment:
18 gtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagtt 70  Q
    |||||||||||||||||| ||||||||   ||||||||||||||| |||||||    
39222141 gtgaaggagctggaatctaaaaagaagctgtttgaaagccaagtgaaggagtt 39222193  T

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Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 39222319 - 39222391
Alignment:
112 ttgagtctaaagagaagcaacttgatggtcgaggggaagaacatgaatcaaaaaagagagaattcgaaggcca 184  Q
    ||||||||||||||||||||||||| || | || | | || ||| |||||||| |||||| ||||||||||||    
39222319 ttgagtctaaagagaagcaacttgaaggccaagtgaaggagcataaatcaaaagagagaggattcgaaggcca 39222391  T

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Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 39415945 - 39415895
Alignment:
89 attgaaaggacaagttaaggaacttgagtctaaagagaagcaacttgatgg 139  Q
    ||||||||||||  ||||||||||||  ||||||||||||||||| |||||    
39415945 attgaaaggacagtttaaggaacttgcttctaaagagaagcaactcgatgg 39415895  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 139
Target Start/End: Complemental strand, 39422217 - 39422183
Alignment:
105 aaggaacttgagtctaaagagaagcaacttgatgg 139  Q
    ||||| |||||||||||||||||||||||||||||    
39422217 aaggaccttgagtctaaagagaagcaacttgatgg 39422183  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 39473995 - 39473926
Alignment:
115 agtctaaagagaagcaacttgatggtcgaggggaagaacatgaatcaaaaaagagagaattcgaaggcca 184  Q
    |||| ||||||||||| |||||||| |||| ||| || ||| |||||||| |||||||||| ||| ||||    
39473995 agtcaaaagagaagcagcttgatggccgagtggaggagcataaatcaaaacagagagaatttgaaagcca 39473926  T

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Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 44895698 - 44895653
Alignment:
21 aaggagctggaatctgaaaagaagagttttgaaagccaagtggagg 66  Q
    |||||||| ||||| ||||||||| |||||||||||||||| ||||    
44895698 aaggagctcgaatcagaaaagaagcgttttgaaagccaagttgagg 44895653  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 184
Target Start/End: Complemental strand, 39390649 - 39390577
Alignment:
112 ttgagtctaaagagaagcaacttgatggtcgaggggaagaacatgaatcaaaaaagagagaattcgaaggcca 184  Q
    ||||||| ||||||||||||| |||  | |||| | | || |||||||||||| |||||||||| ||||||||    
39390649 ttgagtcaaaagagaagcaacatgaaagccgagtgaaggagcatgaatcaaaagagagagaatttgaaggcca 39390577  T

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Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 17059296 - 17059398
Alignment:
18 gtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagttcgaatcacaacagaggcaattgaaaggacaagttaaggaacttgagt 117  Q
    |||||||||||||||||| |||| |||  |||||| | ||||||||||||| || ||||| || ||||||||||| ||||| ||||| |||| |||||||    
17059296 gtgaaggagctggaatctaaaaaaaaggattttgatatccaagtggaggagctcaaatcaaaagagaggcaattggaaggagaagttcaggatcttgagt 17059395  T
118 cta 120  Q
    |||    
17059396 cta 17059398  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 33560468 - 33560519
Alignment:
90 ttgaaaggacaagttaaggaacttgagtctaaagagaagcaacttgatggtc 141  Q
    ||||||| |||| || | |||||||| |||||||||||||||||||||||||    
33560468 ttgaaagaacaacttcaagaacttgattctaaagagaagcaacttgatggtc 33560519  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 19807332 - 19807440
Alignment:
31 aatctgaaaagaagagttttgaaagccaagtggaggagttcgaatcacaacagaggcaattgaaaggacaagttaaggaacttgagtctaaagagaagca 130  Q
    ||||| ||||||||   ||||||||||||||||||||| |  ||||| || |||| ||     ||||||||||||| |||||||||||||||| ||||||    
19807332 aatctaaaaagaagctgtttgaaagccaagtggaggagcttaaatcaaaagagagacatactcaaggacaagttaaagaacttgagtctaaagcgaagca 19807431  T
131 acttgatgg 139  Q
    |||||||||    
19807432 acttgatgg 19807440  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 19807138 - 19807182
Alignment:
89 attgaaaggacaagttaaggaacttgagtctaaagagaagcaact 133  Q
    ||||||||||||| ||||||| ||||  |||||||||||||||||    
19807138 attgaaaggacaacttaaggagcttgcctctaaagagaagcaact 19807182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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