View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0619_low_37 (Length: 304)
Name: NF0619_low_37
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0619_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 20761194 - 20761095
Alignment:
| Q |
21 |
gatttgagtaaaatatgaggtgaatttttcttgaaaactaagtatcctgctcaaagacttattaatctgattaaataatgttgatcaatgttattaaatt |
120 |
Q |
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| T |
20761194 |
gatttgagtaaaatatgaggtaaatttttcttgaaaactaagtatcctgcttaaagactgattaatctgattaaataatgttgatcaatgttattaaatt |
20761095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 20767585 - 20767486
Alignment:
| Q |
21 |
gatttgagtaaaatatgaggtgaatttttcttgaaaactaagtatcctgctcaaagacttattaatctgattaaataatgttgatcaatgttattaaatt |
120 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
20767585 |
gatttgagtaaaatatgaggtaaatttttcttgaaaactaagtatcctgcttaaagactgattaatctgattaaataatgttgatcaatgttattaaatt |
20767486 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 178 - 297
Target Start/End: Complemental strand, 20761037 - 20760918
Alignment:
| Q |
178 |
ggggctatatcaccatnnnnnnnttaatctagaatataattgtcttatactagcgatgatgtgtgtgnnnnnnnnagtatcatccaaacagtccctaaga |
277 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
20761037 |
ggggctatatcaccataaaaaaattaatctagaatataattgtcttatactagcgatgatgtgtgtgttttttttagtatcatccaaacagtccctaaga |
20760938 |
T |
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| Q |
278 |
atatcgtttcatattcttcg |
297 |
Q |
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| T |
20760937 |
atatcgtttcatatgcttcg |
20760918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 178 - 297
Target Start/End: Complemental strand, 20767428 - 20767309
Alignment:
| Q |
178 |
ggggctatatcaccatnnnnnnnttaatctagaatataattgtcttatactagcgatgatgtgtgtgnnnnnnnnagtatcatccaaacagtccctaaga |
277 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
20767428 |
ggggctatatcaccataaaaaaattaatctagaatataattgtcttatactagcgatgatgtgtgtgttttttttagtatcatccaaacagtccctaaga |
20767329 |
T |
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| Q |
278 |
atatcgtttcatattcttcg |
297 |
Q |
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|||||||||||||| ||||| |
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| T |
20767328 |
atatcgtttcatatgcttcg |
20767309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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