View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0619_low_38 (Length: 301)
Name: NF0619_low_38
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0619_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 30 - 296
Target Start/End: Complemental strand, 2289880 - 2289614
Alignment:
| Q |
30 |
gttgttgctgaaaaactgtcaggggaggcaccagttgagttggaaaaagaaaacagtacagctgaattggaaaagcctcaagtggaagaaccatctctgg |
129 |
Q |
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| T |
2289880 |
gttgttgctgaaaaactgtcaggggaggcaccagttgagttggaaaaagaaaacagaacagctgaattggaaaagcctcaagtggaagaaccatctctgg |
2289781 |
T |
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| Q |
130 |
cggaaccggtggaacaactttctgtggaagctttggacgctgttgtttctgaaaaacccaaagaggaagcaccagttgaattggagaaagaaaatggtac |
229 |
Q |
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| T |
2289780 |
cggaaccggtggaacaactttctgtggaagctttggacgctgttgttgctgaaaaacccaaagaggaagcaccagttgaattggagaaagaaaatggtac |
2289681 |
T |
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| Q |
230 |
agctgatagcagttataagcaagagaaatccggcgcagaggaaagcgaaggtgctgagaaagtgagt |
296 |
Q |
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| T |
2289680 |
agctgatagcagttataagcaagagaaatccggcgcagaggaaagcgaaggtgctgagaaagtgagt |
2289614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 223
Target Start/End: Complemental strand, 2289957 - 2289828
Alignment:
| Q |
94 |
aattggaaaagcctcaagtggaagaaccatctctggcggaaccggtggaacaactttctgtggaagctttggacgctgttgtttctgaaaaacccaaaga |
193 |
Q |
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| T |
2289957 |
aattggaaaagcctcaagtggaagaaatatcaatggcggaaccggcagaacaacttcttgagaaatctttggatcctgttgttgctgaaaaactgtcagg |
2289858 |
T |
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| Q |
194 |
ggaagcaccagttgaattggagaaagaaaa |
223 |
Q |
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| T |
2289857 |
ggaggcaccagttgagttggaaaaagaaaa |
2289828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 187
Target Start/End: Complemental strand, 2290147 - 2290056
Alignment:
| Q |
96 |
ttggaaaagcctcaagtggaagaaccatctctggcggaaccggtggaacaactttctgtggaagctttggacgctgttgtttctgaaaaacc |
187 |
Q |
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||||||||||||||||||||||| | ||| || | ||||||||| ||||| |||||| ||||||||| | || ||||| |||||||||| |
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| T |
2290147 |
ttggaaaagcctcaagtggaagacacttctatgactgaaccggtgaaacaagtttctgaagaagctttgaatgcagttgtcgctgaaaaacc |
2290056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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