View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0619_low_5 (Length: 492)
Name: NF0619_low_5
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0619_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 198 - 457
Target Start/End: Original strand, 1880692 - 1880964
Alignment:
| Q |
198 |
ggtgaatatttgtattttgtgatatgacctcagtgacttcttacatgatgttgagtcttacatttcttaagaatccaattag-nnnnnnnngttcaaaag |
296 |
Q |
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| T |
1880692 |
ggtgaatatttgtattttgtgatatgacctcagtgacttcttacatgatgttgagtcttacatttcttaagaatccaattagatttcttttgttcaaaag |
1880791 |
T |
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| Q |
297 |
a----------------ttttaagtcttaaataaataaggttttgtgtccaaagttattttgtcaagatatatagttgtttttagacacctcaaatttgc |
380 |
Q |
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| T |
1880792 |
atttaattaaaaaaagattttaagtcttacataaataaggttttgtgtccaaagttattttgtcaag----atagttgtttttagacacctcaaatttgc |
1880887 |
T |
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| Q |
381 |
tcccaatctaattttgttttattttgaaattccttctaannnnnnnnagaaaatgttccatgagtgtgtaaatatta |
457 |
Q |
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| T |
1880888 |
tcccaatctaattttgttttattttgaaattccttctaattttttttagaaaatgttccatgaatgtgtaaatatta |
1880964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 1880632 - 1880696
Alignment:
| Q |
111 |
gagatcataaaagttacacgtatactccttcaaaataagttacacgtatactattttttgggtga |
175 |
Q |
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| T |
1880632 |
gagatcataaaagttacacgtatactccttcaaaataagttacacgtatactattttttgggtga |
1880696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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