View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0619_low_54 (Length: 251)

Name: NF0619_low_54
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0619_low_54
NF0619_low_54
[»] chr3 (9 HSPs)
chr3 (1-235)||(22604259-22604501)
chr3 (41-238)||(50093401-50093605)
chr3 (41-238)||(54378152-54378351)
chr3 (56-238)||(11559613-11559791)
chr3 (56-238)||(11568882-11569060)
chr3 (56-242)||(33757158-33757354)
chr3 (52-242)||(25745903-25746089)
chr3 (154-232)||(54783665-54783743)
chr3 (52-114)||(8414397-8414459)
[»] chr2 (11 HSPs)
chr2 (26-238)||(30870229-30870448)
chr2 (59-235)||(26353660-26353842)
chr2 (48-236)||(17353950-17354136)
chr2 (83-238)||(8909989-8910157)
chr2 (52-238)||(19033886-19034068)
chr2 (41-126)||(29454308-29454392)
chr2 (133-228)||(29454183-29454279)
chr2 (55-165)||(34214321-34214428)
chr2 (52-176)||(21430616-21430739)
chr2 (133-230)||(41341866-41341961)
chr2 (71-119)||(8909942-8909990)
[»] chr8 (10 HSPs)
chr8 (28-238)||(2751573-2751786)
chr8 (29-235)||(15075378-15075588)
chr8 (41-235)||(4975208-4975406)
chr8 (41-242)||(20990679-20990889)
chr8 (41-238)||(25380660-25380850)
chr8 (55-238)||(38758704-38758888)
chr8 (41-142)||(25689159-25689261)
chr8 (151-231)||(9293604-9293685)
chr8 (197-238)||(25689291-25689332)
chr8 (133-187)||(13322513-13322567)
[»] chr1 (9 HSPs)
chr1 (32-235)||(25878584-25878792)
chr1 (41-236)||(10917810-10918002)
chr1 (44-238)||(28007336-28007528)
chr1 (55-238)||(9342938-9343123)
chr1 (55-238)||(30936849-30937028)
chr1 (48-224)||(32990842-32991015)
chr1 (56-178)||(33372442-33372558)
chr1 (65-122)||(41182060-41182117)
chr1 (141-242)||(45433270-45433371)
[»] scaffold0092 (1 HSPs)
scaffold0092 (56-242)||(53863-54046)
[»] chr4 (5 HSPs)
chr4 (41-238)||(22433733-22433924)
chr4 (52-242)||(9591667-9591852)
chr4 (52-238)||(19898067-19898251)
chr4 (52-236)||(56490863-56491039)
chr4 (48-120)||(33819266-33819345)
[»] chr5 (8 HSPs)
chr5 (41-242)||(41249617-41249820)
chr5 (41-238)||(37193035-37193228)
chr5 (41-238)||(29069242-29069444)
chr5 (52-242)||(7032705-7032887)
chr5 (52-236)||(25859958-25860134)
chr5 (43-80)||(26708485-26708522)
chr5 (43-80)||(26978219-26978256)
chr5 (181-210)||(32391041-32391070)
[»] chr7 (5 HSPs)
chr7 (55-238)||(8543742-8543933)
chr7 (56-238)||(42594306-42594479)
chr7 (52-238)||(23428896-23429074)
chr7 (63-161)||(36342321-36342415)
chr7 (56-105)||(26957241-26957290)
[»] scaffold0070 (1 HSPs)
scaffold0070 (55-238)||(39928-40111)
[»] chr6 (4 HSPs)
chr6 (55-238)||(292233-292410)
chr6 (55-238)||(17371591-17371768)
chr6 (171-234)||(11083083-11083146)
chr6 (55-122)||(11083164-11083231)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 22604501 - 22604259
Alignment:
Q  1 catttttaatctaaaattagatata---gacccctctttaataatttattacattacaaaaaattacaaaactaagaaggatcctaatgagtgttctaag 97  Q
    ||||||||| | ||||||| |||||   |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  22604501 catttttaacccaaaattaaatatatttgaccactctttaataatttattacactacaaaaaattacaaaactaagaaggatcctaataagtgttctaag 22604402  T
Q  98 agcactagttaataaatcaaaagaagtatatattctt-----ttttataaaaagtcgttataattattatatcgacacaaataacacttattttttagat 192  Q
    ||||||||||||||||| ||||||||||| |||| ||     ||||||||||||| ||||||||||||||||| | ||||||||| ||||||||||||||    
T  22604401 agcactagttaataaattaaaagaagtatttatttttttttattttataaaaagttgttataattattatatctatacaaataacgcttattttttagat 22604302  T
Q  193 aaaattttcttttatgaattctttaaccaattatcttagagca 235  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  22604301 aaaattttcttttatgaattctttaaccaattatcttagagca 22604259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 41 - 238
Target Start/End: Complemental strand, 50093605 - 50093401
Alignment:
Q  41 atttattacattacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattc-------t 133  Q
    |||||||||| |||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | ||        |    
T  50093605 atttattacactacaaaaaattataaaactaagaagaatcataatgagtgttctaagagcactagttaataaatcaaaagaagtatttttttatttattt 50093506  T
Q  134 tttttataaaaagtcgttataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagag 233  Q
    |||||||||||||| |||||||||||||||| || ||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| ||||    
T  50093505 tttttataaaaagttgttataattattatattgatacaaataacacttatttttaagataaaaatttcttttatgaaatctttaaccaattatctcagag 50093406  T
Q  234 catat 238  Q
    |||||    
T  50093405 catat 50093401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 41 - 238
Target Start/End: Complemental strand, 54378351 - 54378152
Alignment:
Q  41 atttattacattacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagta--tatattctttttt 138  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||  |||||||||||||| ||||||||||||||||  | | || ||||||    
T  54378351 atttattacattataaaaaattacaaaactaagaaggatcctaacgagtgttacaagagcactagttagtaaatcaaaagaagtagtttttttttttttt 54378252  T
Q  139 ataaaaagtcgttataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcatat 238  Q
    ||||||||| ||||||||||||||||||| ||||||||   |||| ||| |||||||||||||||||| ||| ||||||||||||||||| | |||||||    
T  54378251 ataaaaagttgttataattattatatcgatacaaataatgtttatctttaagataaaattttcttttacgaaatctttaaccaattatctcaaagcatat 54378152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 56 - 238
Target Start/End: Complemental strand, 11559791 - 11559613
Alignment:
Q  56 aaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttataaaaagtcgttataa 155  Q
    ||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||||||  |||||  |    || |||||||||||| |||||||    
T  11559791 aaaaatttcaaaattaagaaggatcctaatgagttttctaagagcactaattaataaatcaaattaagtagtt----ttgtttataaaaagttgttataa 11559696  T
Q  156 ttattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcatat 238  Q
    |||||||||| | ||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  11559695 ttattatatccatacaaataacgcttatttttaagataaaattttcttttatgaaatctttaaccaattatctcagagcatat 11559613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 56 - 238
Target Start/End: Complemental strand, 11569060 - 11568882
Alignment:
Q  56 aaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttataaaaagtcgttataa 155  Q
    ||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||||||  |||||  |    || |||||||||||| |||||||    
T  11569060 aaaaatttcaaaattaagaaggatcctaatgagttttctaagagcactaattaataaatcaaattaagtagtt----ttgtttataaaaagttgttataa 11568965  T
Q  156 ttattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcatat 238  Q
    |||||||||| | ||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  11568964 ttattatatccatacaaataacgcttatttttaagataaaattttcttttatgaaatctttaaccaattatctcagagcatat 11568882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 242
Target Start/End: Complemental strand, 33757354 - 33757158
Alignment:
Q  56 aaaaattacaaaactaagaaggatcctaat---gagtgttctaagagcactagttaataaatcaaaagaagta------tatattctttttt-ataaaaa 145  Q
    ||||| |||||||||||||||||| |||||   ||||||||||||| |||| ||||| |||| ||||||||||      | |||| |||||| |||||||    
T  33757354 aaaaaatacaaaactaagaaggattctaataatgagtgttctaagaacacttgttaagaaattaaaagaagtaattttttttattttttttttataaaaa 33757255  T
Q  146 gtcgttataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcatattgtt 242  Q
    || |||||||||||||||| || | ||||||| ||||||||| | ||||||||||||||||||||||| |||||||||| |||||||| ||||||||    
T  33757254 gttgttataattattatattgataaaaataacgcttatttttaaaataaaattttcttttatgaattcattaaccaattctcttagagtatattgtt 33757158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 242
Target Start/End: Original strand, 25745903 - 25746089
Alignment:
Q  52 tacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttataaaaagtcgtt 151  Q
    |||||| ||||| |||| || |||| ||| |||||||| ||||||||||||||||||| |||| ||||||||||       ||||||||||||| | | |    
T  25745903 tacaaagaattaaaaaattaggaagaatcttaatgagtattctaagagcactagttaagaaattaaaagaagta------attttttataaaaa-ttgat 25745995  T
Q  152 ataattattatatcgacacaa---ataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcatattgtt 242  Q
     ||||||||||||| | | ||   ||||| ||||||||| ||||| ||||| |||||||||| ||||||| ||||| ||||||||  |||||||    
T  25745996 gtaattattatatctataaaaattataacgcttatttttaagatagaatttccttttatgaaatctttaatcaattctcttagagattattgtt 25746089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 54783743 - 54783665
Alignment:
Q  154 aattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttaga 232  Q
    |||||||||||||| | |||||||  |||||||| |||||||||||||||||||||| | ||||||||||| |||||||    
T  54783743 aattattatatcgataaaaataacgattatttttaagataaaattttcttttatgaaatatttaaccaattctcttaga 54783665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 8414459 - 8414397
Alignment:
Q  52 tacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaat 114  Q
    |||||||||||||||||| || ||||||| |||||||| ||||||||||| || |||||||||    
T  8414459 tacaaaaaattacaaaacaaaaaaggatcataatgagttttctaagagcattaattaataaat 8414397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 26 - 238
Target Start/End: Original strand, 30870229 - 30870448
Alignment:
Q  26 gacccctctttaataatttattacattacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagta 125  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30870229 gacccctctttaataatttattacactacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaaata 30870328  T
Q  126 --tatatt-----cttttttataaaaagtcgttataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaa 218  Q
      | ||||      ||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30870329 tttttattttttatttttttataaaaagttgttataattattatatctatacaaataacacttattttttagacaaaattttcttttatgaattctttaa 30870428  T
Q  219 ccaattatcttagagcatat 238  Q
    ||||||||||||||||||||    
T  30870429 ccaattatcttagagcatat 30870448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 59 - 235
Target Start/End: Original strand, 26353660 - 26353842
Alignment:
Q  59 aattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagta------tatattcttttttataaaaagtcgtta 152  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||      | | || ||||||||||||| | ||||    
T  26353660 aattacaaaactaagaatgatcctaatgagtgttctaagagcactagttaataaatcaaaagaaatagttttttttttttttttttataaaaatttgtta 26353759  T
Q  153 taattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagca 235  Q
    || ||||||||| || ||||||||| ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||    
T  26353760 tacttattatattgatacaaataacgcttatttttaagataaaatattcttttatgaaatctttaaccaattatcttagagca 26353842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 48 - 236
Target Start/End: Complemental strand, 17354136 - 17353950
Alignment:
Q  48 acattacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttataaaaagt 147  Q
    |||||| || ||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||   | | ||||||||||||||     
T  17354136 acattataataaattacaaaactaagaaggatcttaatgagtgttctaagagcactagataagaaatcaaaagaagta---acttttttttataaaaaga 17354040  T
Q  148 cgttataattattatatcgacacaaataacacttatttttta-gataaaattttcttttatgaattctttaaccaattatcttagagcat 236  Q
     ||| ||||||||||||||||| ||||||| ||||||||| | || ||||  |||||||||||| ||||||||||||| |||||||||||    
T  17354039 tgttgtaattattatatcgacaaaaataacgcttatttttaaggaaaaaaaattcttttatgaaatctttaaccaattttcttagagcat 17353950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 83 - 238
Target Start/End: Original strand, 8909989 - 8910157
Alignment:
Q  83 aatgagtgttctaagagcactagttaataaatcaaaagaagta----------tatattctttt-ttataaaaagtcgttataattattatatcgacaca 171  Q
    ||||||||||||||||| |||||||||||||||||||||||||          ||| || |||| ||||||||||| ||||||||||||||||||| |||    
T  8909989 aatgagtgttctaagagtactagttaataaatcaaaagaagtagtttttattttattttatttttttataaaaagttgttataattattatatcgataca 8910088  T
Q  172 aataacacttattttttagataaaattttcttttatga--attctttaaccaattatcttagagcatat 238  Q
    |||||  ||||||||| ||||||||| |||||||||||  | |||||||||||||||||||||||||||    
T  8910089 aataatgcttatttttaagataaaatattcttttatgatcaatctttaaccaattatcttagagcatat 8910157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 52 - 238
Target Start/End: Complemental strand, 19034068 - 19033886
Alignment:
Q  52 tacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttataaaaagtcgtt 151  Q
    ||||||| |||||||||||| |||| | |||||| ||| |||| | |||| | ||||| |||| |||| ||||| |||||  |||||||||||||| |||    
T  19034068 tacaaaatattacaaaactatgaagtaacctaattagttttcttaaagcagttgttaagaaattaaaaaaagta-atatt--tttttataaaaagttgtt 19033972  T
Q  152 ataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcatat 238  Q
     |||||||| |||||| | ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||| |||| ||||    
T  19033971 gtaattattttatcgataaaaataacactt-tttttaagataaaattttcttttatgaattctttaaccaattttctaagagtatat 19033886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 29454392 - 29454308
Alignment:
Q  41 atttattacattacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtat 126  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  29454392 atttattacactacaaaaaattacaaaactaagaaggatccta-tgagtgttctaagagcactagttaagaaatcaaaagaagtat 29454308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 29454279 - 29454183
Alignment:
Q  133 ttttttataaaaagtcgttataattattatatc-gacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatct 228  Q
    |||| |||||||||| ||||||||||||||||| || ||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  29454279 ttttctataaaaagttgttataattattatatcagatacaaataacgcttatttttaagataaaattttcttttatgaaatctttaaccaattatct 29454183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 34214428 - 34214321
Alignment:
Q  55 aaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttataaaaagtcgttata 154  Q
    |||||||||||||||||| ||||||| ||| ||||||| |||||||||||||||| ||||||||||||||    ||| ||||||||||||||| |||| |    
T  34214428 aaaaaattacaaaactaaaaaggatcttaacgagtgttttaagagcactagttaagaaatcaaaagaagt---catttttttttataaaaagttgttaaa 34214332  T
Q  155 attattatatc 165  Q
    |||||||||||    
T  34214331 attattatatc 34214321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 52 - 176
Target Start/End: Original strand, 21430616 - 21430739
Alignment:
Q  52 tacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaa-tcaaaagaagtatatattctttt--ttataaaaagtc 148  Q
    ||||||||||||||||||||| |||||||    |||||||| |||||||||||||||| ||| ||||||||||||| | || ||||  |||||||||||     
T  21430616 tacaaaaaattacaaaactaacaaggatc----tgagtgttgtaagagcactagttaaaaaaatcaaaagaagtattttttattttttttataaaaagtt 21430711  T
Q  149 gttataattattatatcgacacaaataa 176  Q
    |||||||||| |||||||| | ||||||    
T  21430712 gttataattactatatcgataaaaataa 21430739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 133 - 230
Target Start/End: Original strand, 41341866 - 41341961
Alignment:
Q  133 ttttttataaaaagtcgttataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatctta 230  Q
    |||||||||||| ||  || |||||||||||||||   |||||||||||| |||| |||||||||||||||||||||| ||||||||||||| |||||    
T  41341866 ttttttataaaaggt--ttgtaattattatatcgatgaaaataacacttaattttaagataaaattttcttttatgaaatctttaaccaattctctta 41341961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 8909942 - 8909990
Alignment:
Q  71 aagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaa 119  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8909942 aagaaggatcctaatgagtgttctaagagcactagttaattaatcaaaa 8909990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 28 - 238
Target Start/End: Original strand, 2751573 - 2751786
Alignment:
Q  28 cccctctttaataatttattacattacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagta-- 125  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||||      
T  2751573 cccctcttttataatttattacactacaaaaaattacaaaactaagaaggatttcattgagtgttctaagagcactagttaataaatcaaaagaagtaat 2751672  T
Q  126 tata-ttcttttttataaaaagtcgttataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaatt 224  Q
    | || || ||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2751673 tttattttttttttataaaaagttgttataattattatatcgatacaaataacgcttattttttagataaaattttcttttatgaattctttaaccaatt 2751772  T
Q  225 atcttagagcatat 238  Q
    ||||||||||||||    
T  2751773 atcttagagcatat 2751786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 29 - 235
Target Start/End: Original strand, 15075378 - 15075588
Alignment:
Q  29 ccctctttaataatttattacattacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagta--- 125  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  15075378 ccctctttaataatttattacactacacaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatta 15075477  T
Q  126 -tatattcttttttataaaaagtcgttataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaatt 224  Q
     | |||| | ||||||||||| | ||||||||||||||||  | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15075478 ttttattttattttataaaaaattgttataattattatatttatacaaataacgcttattttttagataaaattttcttttatgaattctttaaccaatt 15075577  T
Q  225 atcttagagca 235  Q
    |||||||||||    
T  15075578 atcttagagca 15075588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 41 - 235
Target Start/End: Complemental strand, 4975406 - 4975208
Alignment:
Q  41 atttattacattacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagta----tatattctttt 136  Q
    |||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    | | || ||||    
T  4975406 atttattatactacaaaaaattacaaaactaagaaggatcctaataagtgttctaagagcactagttaataaatcaaaagaagtattttttttttttttt 4975307  T
Q  137 ttataaaaagtcgttataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagca 235  Q
    ||||||||||| ||||||||||||||||| | ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4975306 ttataaaaagttgttataattattatatctatacaaataacgcttatttttaagataaaattttcttttatgaattctttaaccaattatcttagagca 4975208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 41 - 242
Target Start/End: Complemental strand, 20990889 - 20990679
Alignment:
Q  41 atttattacattacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagta----tatattctttt 136  Q
    |||||||||| || |||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||| |||||||| ||    | | || ||||    
T  20990889 atttattacactataaaaaattacaaaactaaaaag-atcctaatgagtgttataagagcactagttaataaaccaaaagaaatagtttttttttttttt 20990791  T
Q  137 ttata------aaaagtcgttataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatctta 230  Q
    |||||      |||||| ||||||||||||||||||| ||||||||  ||||||||| |||||||||||||||||||||| ||||||||||| ||||| |    
T  20990790 ttatatataaaaaaagttgttataattattatatcgatacaaataatgcttatttttaagataaaattttcttttatgaaatctttaaccaactatctca 20990691  T
Q  231 gagcatattgtt 242  Q
     |||||||||||    
T  20990690 tagcatattgtt 20990679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 41 - 238
Target Start/End: Original strand, 25380660 - 25380850
Alignment:
Q  41 atttattacattacaaaaa-attacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattctttttta 139  Q
    |||||||||| || ||||| |||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||||  |||  |||||||    
T  25380660 atttattacactataaaaatattacaaaactaagaatgatcttaatgtgtgttctaagagcactagttaataaattaaaagaagta-gtat--tttttta 25380756  T
Q  140 taaaaagtcgttataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcatat 238  Q
    | |||||| ||| ||||     |||||| | ||||||| ||||||||| ||| ||| | |||||||||||| |||||||||||||||||||||| ||||    
T  25380757 tgaaaagttgttgtaat-----tatcgataaaaataacgcttatttttaagagaaagtattcttttatgaaatctttaaccaattatcttagagtatat 25380850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 55 - 238
Target Start/End: Original strand, 38758704 - 38758888
Alignment:
Q  55 aaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttataaaaagtcgttata 154  Q
    ||||||||||||||||||||| |||  ||||||||||||||||| |||||  ||| | |||||||||||| ||| || ||||| ||||||||| ||| ||    
T  38758704 aaaaaattacaaaactaagaatgattttaatgagtgttctaagaacactatataagatatcaaaagaagt-tattttttttttaataaaaagttgttgta 38758802  T
Q  155 attattatatcgacacaaataacacttatttttta-gataaaattttcttttatgaattc-tttaaccaattatcttagagcatat 238  Q
    ||||||||||||||| ||||||| ||||||||| | || || | ||||||||| ||| || ||||||||| | ||||||| |||||    
T  38758803 attattatatcgacaaaaataacgcttatttttaaggaaaataatttcttttaggaaatcttttaaccaaatctcttagatcatat 38758888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 25689159 - 25689261
Alignment:
Q  41 atttattacattacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagta-tatattctttttta 139  Q
    |||||||||| || |||||||||||||||||||||||||| ||||| || |||||  |||||||||||||||||||||||||||| | |||| |||||||    
T  25689159 atttattacactataaaaaattacaaaactaagaaggatcgtaatgtgttttctattagcactagttaataaatcaaaagaagtattttattttttttta 25689258  T
Q  140 taa 142  Q
    |||    
T  25689259 taa 25689261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 9293685 - 9293604
Alignment:
Q  151 tataattattatatc-gacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttag 231  Q
    ||||||||||||||| || |||||||| |||||||||| |||||||||||||||||||||| ||| ||||||||||||||||    
T  9293685 tataattattatatcagatacaaataagacttatttttaagataaaattttcttttatgaaatctgtaaccaattatcttag 9293604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 25689291 - 25689332
Alignment:
Q  197 ttttcttttatgaattctttaaccaattatcttagagcatat 238  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  25689291 ttttcttttatgaaatctttaaccaattatcttagagcatat 25689332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 13322513 - 13322567
Alignment:
Q  133 ttttttataaaaagtcgttataattattatatcgacacaaataacacttattttt 187  Q
    ||||||||||||  | ||| ||||||||||||||||| ||||||| |||||||||    
T  13322513 ttttttataaaatattgttgtaattattatatcgacaaaaataacgcttattttt 13322567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 32 - 235
Target Start/End: Complemental strand, 25878792 - 25878584
Alignment:
Q  32 tctttaataatttattacattacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatat- 130  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |     
T  25878792 tctttaataatttattatactacaaaaaattacaaaactaagaaggatcctaataagtgttctaagagcactagttaataaatcaaaagaagtattttta 25878693  T
Q  131 ----tcttttttataaaaagtcgttataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattat 226  Q
        | ||||||||||||||| |||||||||||| |||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25878692 tttttattttttataaaaagttgttataattattgtatctatacaaataacgcttattttttagataaaattttcttttatgaattctttaaccaattat 25878593  T
Q  227 cttagagca 235  Q
    |||||||||    
T  25878592 cttagagca 25878584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 41 - 236
Target Start/End: Original strand, 10917810 - 10918002
Alignment:
Q  41 atttattacattacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttat 140  Q
    |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    || | ||||||||    
T  10917810 atttattacactacaaaaaattataaaactaggaaggatcctaatgagtgttctaagagcacaagttaataaatcaaaagaag----tagttttttttat 10917905  T
Q  141 -aaaaagtcgttataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcat 236  Q
     ||||||| |||||||||||||||| || ||||||||| ||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||    
T  10917906 aaaaaagttgttataattattatattgatacaaataacgcttatttttaagataaaaatttcttttatgaaatctttaaccaattatctcagagcat 10918002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 44 - 238
Target Start/End: Complemental strand, 28007528 - 28007336
Alignment:
Q  44 tattacattacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttataaa 143  Q
    ||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |  || |||||| ||||    
T  28007528 tattacactataaaaaattataaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaag--cagttttttttttctaaa 28007431  T
Q  144 aagtcgttataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcatat 238  Q
    |||| |||||||||||||||| || ||||||||| ||||||||| |||||||| ||||||||||||| ||||||||||||||||| | |||||||    
T  28007430 aagttgttataattattatattgatacaaataacgcttatttttaagataaaaatttcttttatgaaatctttaaccaattatctcaaagcatat 28007336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 55 - 238
Target Start/End: Original strand, 9342938 - 9343123
Alignment:
Q  55 aaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagt-atatattctttttt--ataaaaagtcgtt 151  Q
    ||||||||||||| |||  ||| | | ||||||||||||||||||||| | |||| |||||||||||||| || |||| ||||||  ||||||||| |||    
T  9342938 aaaaaattacaaacctataaagcaacataatgagtgttctaagagcaccaattaagaaatcaaaagaagttatttatttttttttctataaaaagttgtt 9343037  T
Q  152 ataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcatat 238  Q
     ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||| ||||    
T  9343038 gtaattat-atatcgataaaaataacacttatttttaagataaaattttcttttatgaaatctttaaccaattctcttagagtatat 9343123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 55 - 238
Target Start/End: Original strand, 30936849 - 30937028
Alignment:
Q  55 aaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaaga-agtatatattcttttttataaaaagtcgttat 153  Q
    ||||||||| |||||||||||||||| |||||||| ||||||||||||||| ||| |||| |||| | ||||   |||  ||||||||||||||  ||||    
T  30936849 aaaaaattataaaactaagaaggatcttaatgagtcttctaagagcactagataagaaattaaaaaatagta---att--tttttataaaaagttattat 30936943  T
Q  154 aattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcatat 238  Q
    |||||||||||||||| ||||||| ||||||||| ||||  | ||||||||||||||  |||||||||||| |||||||||||||    
T  30936944 aattattatatcgacaaaaataacgcttatttttaagatctatttttcttttatgaaacctttaaccaattctcttagagcatat 30937028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 224
Target Start/End: Original strand, 32990842 - 32991015
Alignment:
Q  48 acattacaaaaaattacaaaactaagaaggatcctaat---gagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttataaaa 144  Q
    |||||| |||||||||||||||||||||||||||||||   ||||||||||||| |||| ||||| |||| |||||||      ||| || || ||  ||    
T  32990842 acattaaaaaaaattacaaaactaagaaggatcctaataatgagtgttctaagaacacttgttaagaaattaaaagaa------attattcttaatggaa 32990935  T
Q  145 agtcgttataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaatt 224  Q
    ||| ||||||||||||||||||| | ||||||| ||||||||| | |||||||||||||||||||| |||||||||||||    
T  32990936 agttgttataattattatatcgataaaaataacgcttatttttaaaataaaattttcttttatgaaatctttaaccaatt 32991015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 178
Target Start/End: Original strand, 33372442 - 33372558
Alignment:
Q  56 aaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttataaaaagtcgttataa 155  Q
    |||||||| |||| ||||||| ||||||||| |||||||||||  ||||||||| ||||||||||||    ||| | | ||||||||||||| |||||||    
T  33372442 aaaaattataaaattaagaagaatcctaatgggtgttctaaga--actagttaaaaaatcaaaagaa----atagtttattttataaaaagttgttataa 33372535  T
Q  156 ttattatatcgacacaaataaca 178  Q
    |||| |||| || ||||||||||    
T  33372536 ttatcatattgatacaaataaca 33372558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 41182060 - 41182117
Alignment:
Q  65 aaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaa 122  Q
    ||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||    
T  41182060 aaaactaagaaagatcataatgagtgttctaagagcactagttaagaaatcaaaagaa 41182117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 45433270 - 45433371
Alignment:
Q  141 aaaaagtcgttataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcatattg 240  Q
    ||||||| ||| ||||||| ||||||| | ||| ||| ||||||||| |||||||||||||||| ||||| ||| ||| || || ||||| || ||||||    
T  45433270 aaaaagttgttgtaattataatatcgataaaaacaacgcttatttttaagataaaattttctttgatgaaatctataatcatttctcttatagtatattg 45433369  T
Q  241 tt 242  Q
    ||    
T  45433370 tt 45433371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 56 - 242
Target Start/End: Complemental strand, 54046 - 53863
Alignment:
Q  56 aaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttataaaaagtcgttataa 155  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    || |||| |||||||||| |||||||    
T  54046 aaaaattacaaaattaaaaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtag---tttttttatataaaaagttgttataa 53950  T
Q  156 ttattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcatattgtt 242  Q
    |||||||||| | ||||||||  ||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  53949 ttattatatcaatacaaataaagcttatttttaagataaaattttcttttatgaaatctttaaccaattatctcagagcatattgtt 53863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 41 - 238
Target Start/End: Original strand, 22433733 - 22433924
Alignment:
Q  41 atttattacattacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttat 140  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||      || ||||| ||    
T  22433733 atttattacactacaaaaaattacaaaactaagaaggattctaatgagtgttctaagagcactagttaataaatcaaaaatag------ttttttttaat 22433826  T
Q  141 aaaaagtcgttataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcatat 238  Q
    ||||||| ||||||||||||||||||| ||| ||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  22433827 aaaaagttgttataattattatatcgatacatataacgcttatttttaggataaaattttcttttatgaaatctttaaccaattatcttcgagcatat 22433924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 52 - 242
Target Start/End: Original strand, 9591667 - 9591852
Alignment:
Q  52 tacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttataaaaagtcgtt 151  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||      ||||||||||||| || |||    
T  9591667 tacaaaaaattacaaaactaagaaggatcataatgagtgttctaagagcactagttaagaaatcaaaagaagtaa-----cttttttataaaatgttgtt 9591761  T
Q  152 ataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcatattgtt 242  Q
     |||||||||||| || | ||||||||||||||||| |||||||||||||||||||||  ||||||||||||| |||||||| ||||||||    
T  9591762 gtaattattatattgataaaaataacacttatttttaagataaaattttcttttatgatatctttaaccaattctcttagagaatattgtt 9591852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 52 - 238
Target Start/End: Original strand, 19898067 - 19898251
Alignment:
Q  52 tacaaaaaattacaaaactaagaaggatcctaat---gagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttataaaaagtc 148  Q
    ||||||||||||| |||||| |||||||||||||   || |||||||| | |||| ||||| |||||||| ||||||   |||  ||||||||||||||     
T  19898067 tacaaaaaattaccaaactaggaaggatcctaataatgaatgttctaataacacttgttaaaaaatcaaatgaagta---att--tttttataaaaagtt 19898161  T
Q  149 gttataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcatat 238  Q
    | ||||||||||||||||| | ||||||||||||||||| | |||||||||||||||||||| ||||||||||||| | |||||||||||    
T  19898162 gctataattattatatcgataaaaataacacttatttttaaaataaaattttcttttatgaaatctttaaccaattttattagagcatat 19898251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 236
Target Start/End: Complemental strand, 56491039 - 56490863
Alignment:
Q  52 tacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttataaaaagtcgtt 151  Q
    ||||||||||||||||||||||||  || |||| |||| ||||||||||||| ||  | |||||||||||||||   |||  |||||||||| | | |      
T  56491039 tacaaaaaattacaaaactaagaaaaattctaacgagtattctaagagcacttgtgtagaaatcaaaagaagta---att--tttttataaatatttgg- 56490946  T
Q  152 ataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcat 236  Q
      ||||||||||| || | ||||||| ||||||||| |||||||||||||||||||||| ||||||| ||||| ||||| |||||    
T  56490945 --aattattatattgataaaaataacgcttatttttaagataaaattttcttttatgaaatctttaatcaattctcttatagcat 56490863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 33819266 - 33819345
Alignment:
Q  48 acattacaaaaaattacaaaactaagaagg-------atcctaatgagtgttctaagagcactagttaataaatcaaaag 120  Q
    ||||||||||||||||||||||||||||||       ||| ||||||||||||||| |||||||||||| ||||||||||    
T  33819266 acattacaaaaaattacaaaactaagaaggttcttaaatcttaatgagtgttctaaaagcactagttaagaaatcaaaag 33819345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 41 - 242
Target Start/End: Original strand, 41249617 - 41249820
Alignment:
Q  41 atttattacattacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagta---tatattcttttt 137  Q
    ||||||||||||| |||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||||||| ||   | |||| | |||    
T  41249617 atttattacattaaaaaaaattacaaaattaagaag-attctaatgagtattctaagagcactagttaataaatcaaaagaaatagtttttattttattt 41249715  T
Q  138 tataaaaagtcgttataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcata 237  Q
    |||||||||| ||||||||||||||||||| ||||||||  |||| |||| |||||||||||||||||| ||| ||||||||||||||| | ||||||||    
T  41249716 tataaaaagttgttataattattatatcgatacaaataattcttacttttaagataaaattttcttttaagaaatctttaaccaattatatcagagcata 41249815  T
Q  238 ttgtt 242  Q
    |||||    
T  41249816 ttgtt 41249820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 41 - 238
Target Start/End: Complemental strand, 37193228 - 37193035
Alignment:
Q  41 atttattacattacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttat 140  Q
    |||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    |  | ||||| |     
T  37193228 atttattaaactacaaaaaattataaaactaagaaggatcctaatgagtgttctaagagcattagttaataaatcaaaagaag----tggtttttttaaa 37193133  T
Q  141 aaaaagtcgttataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcatat 238  Q
    || |||| |||||||||||||||| || ||||||||| ||||||||| |||| ||| ||||||||||||| ||||||||||||||||| | |||||||    
T  37193132 aagaagttgttataattattatattgatacaaataacgcttatttttaagatcaaaatttcttttatgaaatctttaaccaattatctcatagcatat 37193035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 238
Target Start/End: Complemental strand, 29069444 - 29069242
Alignment:
Q  41 atttattacattacaaaaaattacaaaactaagaaggatcctaatgagtgttctaa-------gagcactagttaataaatcaaaagaagtatatattct 133  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||  |||  || |    
T  29069444 atttattacactacaaaaaattataaaactaagaaggatcctaatgagtgttctaatttctaagagcactagttaataaatcaaaagaa--atagttttt 29069347  T
Q  134 tttttataaaaagtcgttataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagag 233  Q
    |||||||||||||| ||||  |||||||||| || ||||||||| ||||||||| ||||||||  |||||||||||| ||||||||||||||||| | ||    
T  29069346 tttttataaaaagttgttaatattattatattgatacaaataacgcttatttttaagataaaaaattcttttatgaaatctttaaccaattatctcatag 29069247  T
Q  234 catat 238  Q
    |||||    
T  29069246 catat 29069242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 52 - 242
Target Start/End: Complemental strand, 7032887 - 7032705
Alignment:
Q  52 tacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttataaaaagtcgtt 151  Q
    ||||||||||||||||| ||| || |||  |||||||||||||||||||||||||||| |||||||||| | |        ||||||||||||| | |||    
T  7032887 tacaaaaaattacaaaattaaaaaagattttaatgagtgttctaagagcactagttaagaaatcaaaagtaat--------ttttttataaaaaattgtt 7032796  T
Q  152 ataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcatattgtt 242  Q
    |||||||||||||||| | ||||| |||||||||||   |||| ||||  ||||| ||| | ||||||||||||||||||| |||||||||    
T  7032795 ataattattatatcgataaaaataccacttatttttacaataatatttatttttaggaaatttttaaccaattatcttagaacatattgtt 7032705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 52 - 236
Target Start/End: Complemental strand, 25860134 - 25859958
Alignment:
Q  52 tacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttataaaaagtcgtt 151  Q
    ||||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||       |||||||||||||    ||    
T  25860134 tacaaaaaattgcaaa-ctaagaaggatcctattgagtgttttaagagcactagttattaaatcaaaagaagta------gttttttataaaaa-aaatt 25860043  T
Q  152 ataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcat 236  Q
     ||||||||||||||| | ||||||| ||||||||| ||||||| ||||||||||| || | |||||||| | ||||||||||||    
T  25860042 gtaattattatatcgataaaaataacgcttatttttaagataaagttttcttttataaaatatttaaccagtaatcttagagcat 25859958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 26708485 - 26708522
Alignment:
Q  43 ttattacattacaaaaaattacaaaactaagaaggatc 80  Q
    |||||||| |||||||||||||||||||||||||||||    
T  26708485 ttattacactacaaaaaattacaaaactaagaaggatc 26708522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 26978219 - 26978256
Alignment:
Q  43 ttattacattacaaaaaattacaaaactaagaaggatc 80  Q
    |||||||| |||||||||||||||||||||||||||||    
T  26978219 ttattacactacaaaaaattacaaaactaagaaggatc 26978256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 210
Target Start/End: Original strand, 32391041 - 32391070
Alignment:
Q  181 tattttttagataaaattttcttttatgaa 210  Q
    ||||||||||||||||||||||||||||||    
T  32391041 tattttttagataaaattttcttttatgaa 32391070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 55 - 238
Target Start/End: Original strand, 8543742 - 8543933
Alignment:
Q  55 aaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagta--------tatattcttttttataaaaag 146  Q
    |||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||        | | || |||||||| |||||    
T  8543742 aaaaaattacaaaactaaaaaggatcctaattagtgttctaagaacactagttaataaatcaaaagaagtagttttttttttttttttttttatgaaaag 8543841  T
Q  147 tcgttataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcatat 238  Q
    | |||||||||||||| | || ||||||||  ||||||||| |||||||||||||||||||||| ||||||| ||||||||| |||||||||    
T  8543842 ttgttataattattatgttgatacaaataatgcttatttttaagataaaattttcttttatgaaatctttaatcaattatctcagagcatat 8543933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 238
Target Start/End: Complemental strand, 42594479 - 42594306
Alignment:
Q  56 aaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttataaaaagtcgttataa 155  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||| ||| |||||||||||||||       |||||||| |||||| ||| |||    
T  42594479 aaaaattacaaaactaagaaagatcttaatgagtgttctaagagcactagataagaaatcaaaagaagta------attttttat-aaaagttgttgtaa 42594387  T
Q  156 ttattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcatat 238  Q
    ||||| |||||||| ||||||| ||||||||| ||| ||||  || ||||||||| ||| ||||||||| |||||||||||||    
T  42594386 ttattgtatcgacaaaaataacgcttatttttaaga-aaaaaattattttatgaa-tctataaccaattctcttagagcatat 42594306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 238
Target Start/End: Complemental strand, 23429074 - 23428896
Alignment:
Q  52 tacaaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttataaaaagtcgtt 151  Q
    |||||||||||||||||| || ||  ||  |||||||||||||||||||||||||||| |||| ||||||||||       ||||| ||||||| | |||    
T  23429074 tacaaaaaattacaaaaccaaaaataattttaatgagtgttctaagagcactagttaagaaattaaaagaagta------atttttaataaaaaattgtt 23428981  T
Q  152 ataattattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcatat 238  Q
    ||||||||||||| || | |||||   ||||||||| |||||| ||||| ||||| ||| | ||||||||||||||||||| |||||    
T  23428980 ataattattatattgataaaaatactgcttatttttaagataatatttt-ttttaggaaat-tttaaccaattatcttagaacatat 23428896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 161
Target Start/End: Complemental strand, 36342415 - 36342321
Alignment:
Q  63 acaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttataaaaagtcgttataattatta 161  Q
    ||||||||| ||||||  |||||||||||||| | ||||||||||||||||| ||||||||||   ||| ||||||||||||| | |||||||||||||    
T  36342415 acaaaactatgaaggaatctaatgagtgttcttaaagcactagttaataaattaaaagaagta---att-ttttttataaaaaattgttataattatta 36342321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 26957290 - 26957241
Alignment:
Q  56 aaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactag 105  Q
    |||||||||||||  ||||||||| |||||||||||||||||||||||||    
T  26957290 aaaaattacaaaatcaagaaggattctaatgagtgttctaagagcactag 26957241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 55 - 238
Target Start/End: Complemental strand, 40111 - 39928
Alignment:
Q  55 aaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttataaaaagtcgttata 154  Q
    |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||| | | | |  | ||||||||||||||| ||| ||    
T  40111 aaaaaatttcaaaactaagaaggatcctaatgtgttttctaagagcactagttaataaatcaaaagtatttttttattttttttataaaaagttgttgta 40012  T
Q  155 attattatatcgacacaaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagcatat 238  Q
    ||||||||||||| | | || ||  |||||||| ||| ||| ||||||| |||||| |||||||||||||||||||||||||||    
T  40011 attattatatcgataaatattacgtttatttttaagagaaagttttcttatatgaaatctttaaccaattatcttagagcatat 39928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 55 - 238
Target Start/End: Complemental strand, 292410 - 292233
Alignment:
Q  55 aaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttataaaaagtcgttata 154  Q
    |||||||||||||| ||||||||||| ||||||||||||| |||||||||| ||| |||||||||||||||       |||||||| |||||| ||| ||    
T  292410 aaaaaattacaaaattaagaaggatcttaatgagtgttctcagagcactagataagaaatcaaaagaagta------attttttat-aaaagttgttgta 292318  T
Q  155 attattatatcgacacaaataacacttattttttag-ataaaattttcttttatgaattctttaaccaattatcttagagcatat 238  Q
    ||||||||||||||  |||  || ||||||||| || | |||| ||| ||||||||| ||||||| ||||| |||||||||||||    
T  292317 attattatatcgactaaaaatacgcttatttttaagaaaaaaagtttattttatgaaatctttaaacaattctcttagagcatat 292233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 238
Target Start/End: Original strand, 17371591 - 17371768
Alignment:
Q  55 aaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaagtatatattcttttttataaaaagtcgttata 154  Q
    |||||| || |||| ||||||||||| ||||| |||||||||||||||||| ||| || | ||||||   ||       |||||||||||||| ||| ||    
T  17371591 aaaaaactaaaaaattaagaaggatcttaatgtgtgttctaagagcactagataagaagtgaaaagattaat-------tttttataaaaagttgttgta 17371683  T
Q  155 attattatatcgacacaaataacacttattttttaga-taaaattttcttttatgaattctttaaccaattatcttagagcatat 238  Q
    ||||||||||||||| ||||||| ||||||||| ||| |    |||||||||||| | ||||||||||||| |||||||||||||    
T  17371684 attattatatcgacaaaaataacgcttatttttaagattttttttttcttttatgcaatctttaaccaattctcttagagcatat 17371768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 11083146 - 11083083
Alignment:
Q  171 aaataacacttattttttagataaaattttcttttatgaattctttaaccaattatcttagagc 234  Q
    |||||| |||||||||| ||  |||| ||||||||||||| |||||||||| || |||||||||    
T  11083146 aaataatacttatttttaaggaaaaaatttcttttatgaaatctttaaccagttttcttagagc 11083083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 11083231 - 11083164
Alignment:
Q  55 aaaaaattacaaaactaagaaggatcctaatgagtgttctaagagcactagttaataaatcaaaagaa 122  Q
    ||||||| ||||||| || || |||| |||||||||||||||||| | ||| ||| ||||||||||||    
T  11083231 aaaaaatcacaaaacaaataaagatcttaatgagtgttctaagagtattagataagaaatcaaaagaa 11083164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 447 times since January 2019
Visitors: 3834