View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0619_low_55 (Length: 250)
Name: NF0619_low_55
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0619_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 11827516 - 11827765
Alignment:
| Q |
1 |
aaagcaaaaccagtgtgataggcatttttattttgaaagaagtgtgatattttagacagtttgtatgtgggacaaagcaggaccggcccaaggcataggt |
100 |
Q |
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| T |
11827516 |
aaaggaaaatcaatgtgatatgcatttttattttgaaagaagtgtgatattttagacagtttgtatgtgggacaaagcagggccggaccaaggcataggt |
11827615 |
T |
|
| Q |
101 |
cgagggtgcggtgactttggatccattcccgtagggacccatacnnnnnnnnnccgggg---------gtgtatatatcaacactttgtttaaagagagt |
191 |
Q |
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| T |
11827616 |
cgggggtgcggtgactttggatccattcccgcagggacccatatttttttttttttgggaggtggcgggtgtttatatcaacactttgtttaaagagagt |
11827715 |
T |
|
| Q |
192 |
ctatatagaaaaaattgcaaagaaggcccaaccctttatcgaactgcatc |
241 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| ||| |||| |
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| T |
11827716 |
ctatatagaaaaaattgcaatgaaggcccaaccctttatcggacttcatc |
11827765 |
T |
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