View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0619_low_7 (Length: 485)

Name: NF0619_low_7
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0619_low_7
NF0619_low_7
[»] chr4 (8 HSPs)
chr4 (1-383)||(56226721-56227103)
chr4 (303-390)||(56226455-56226542)
chr4 (334-382)||(20143280-20143328)
chr4 (337-383)||(21527027-21527073)
chr4 (335-384)||(13924792-13924841)
chr4 (334-383)||(14527575-14527624)
chr4 (344-385)||(24666127-24666168)
chr4 (332-384)||(42792774-42792826)
[»] chr5 (5 HSPs)
chr5 (302-383)||(29594906-29594987)
chr5 (333-384)||(27345917-27345968)
chr5 (344-383)||(2029056-2029095)
chr5 (308-383)||(29595567-29595642)
chr5 (329-383)||(16195123-16195177)
[»] chr7 (4 HSPs)
chr7 (316-383)||(3314955-3315022)
chr7 (302-383)||(3315430-3315511)
chr7 (331-383)||(34808985-34809037)
chr7 (335-381)||(44876934-44876980)
[»] chr2 (6 HSPs)
chr2 (336-384)||(29388282-29388330)
chr2 (344-383)||(127744-127783)
chr2 (344-383)||(7754976-7755015)
chr2 (336-383)||(29388949-29388996)
chr2 (333-387)||(1141296-1141350)
chr2 (324-383)||(3203861-3203921)
[»] chr1 (8 HSPs)
chr1 (309-385)||(32772098-32772174)
chr1 (331-383)||(27745556-27745608)
chr1 (311-382)||(6942191-6942262)
chr1 (344-383)||(39682319-39682358)
chr1 (336-383)||(43552993-43553040)
chr1 (344-385)||(16449553-16449594)
chr1 (344-385)||(16459127-16459168)
chr1 (336-381)||(24455822-24455867)
[»] chr8 (2 HSPs)
chr8 (336-383)||(16911047-16911094)
chr8 (335-385)||(5434030-5434080)
[»] chr3 (5 HSPs)
chr3 (336-385)||(20807935-20807984)
chr3 (310-382)||(54308454-54308526)
chr3 (341-383)||(47808362-47808404)
chr3 (333-385)||(3584003-3584055)
chr3 (336-384)||(4706957-4707005)
[»] chr6 (2 HSPs)
chr6 (333-383)||(34423374-34423424)
chr6 (335-383)||(34423571-34423619)
[»] scaffold0627 (1 HSPs)
scaffold0627 (335-383)||(6464-6512)


Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 56226721 - 56227103
Alignment:
Q  1 tcacgtgataaacaacagttcatataggactaatatactcaaaaactacaatggaattcttttctgttgatgctaattcctataaatattcttttgaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56226721 tcacgtgataaacaacagttcatataggactaatatactcaaaaactacaatggaattcttttctgttgatgctaattcctataaatattcttttgaaat 56226820  T
Q  101 taatttcctaattgaattcttcgacggttattgtcaaaatcccttttcatttctcaaatattttttctaaaatttccttgaacttgttttaattttactc 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  56226821 taatttcctaattgaattcctcgacggttattgtcaaaatcccttttcattcctcaaatattttttctaaaatttccttgaacttgttttaattttactt 56226920  T
Q  201 tccattaagtgtgcggcggtgaaatctgccaggcgagagagaattggttgctgaaaggagttatcaaatttaaatccagtgtggtcatgtataatgaaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  56226921 tccattaagtgtgcggcggtgaaatctgccaggcgagagagaattggttgcagaaaggagttattaaatttaaatccagtgtggtcatgtataatgaaac 56227020  T
Q  301 aatatgatcttattaaatccaacggttaaataaagtggtacatcggtgaaggacttcattgagccctcaccctagaatccacc 383  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  56227021 aatatgattttattaaatccaacggttaaataaagtggtacaccggtgaaggacttcattgagccctcactctagaatccacc 56227103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 303 - 390
Target Start/End: Complemental strand, 56226542 - 56226455
Alignment:
Q  303 tatgatcttattaaatccaacggttaaataaagtggtacatcggtgaaggacttcattgagccctcaccctagaatccaccataataa 390  Q
    |||| |||||||||||| || ||||||||||||||||||||||||||  ||||| ||||| |||||| | ||||||||||||||||||    
T  56226542 tatggtcttattaaatctaatggttaaataaagtggtacatcggtgagagacttaattgatccctcatcttagaatccaccataataa 56226455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 382
Target Start/End: Complemental strand, 20143328 - 20143280
Alignment:
Q  334 agtggtacatcggtgaaggacttcattgagccctcaccctagaatccac 382  Q
    ||||||||| |||||| ||||||  ||||||||||||||||||||||||    
T  20143328 agtggtacaccggtgagggacttagttgagccctcaccctagaatccac 20143280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 21527027 - 21527073
Alignment:
Q  337 ggtacatcggtgaaggacttcattgagccctcaccctagaatccacc 383  Q
    |||||| |||||| |||||| || |||||||||||||||||||||||    
T  21527027 ggtacaacggtgagggacttaatagagccctcaccctagaatccacc 21527073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 13924841 - 13924792
Alignment:
Q  335 gtggtacatcggtgaaggacttcattgagccctcaccctagaatccacca 384  Q
    ||||| || |||||| ||| || |||||||||||||||||||||||||||    
T  13924841 gtggtccaccggtgagggatttaattgagccctcaccctagaatccacca 13924792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 383
Target Start/End: Original strand, 14527575 - 14527624
Alignment:
Q  334 agtggtacatcggtgaaggacttcattgagccctcaccctagaatccacc 383  Q
    |||||| || |||||| |||||| ||||| ||||||||||||||||||||    
T  14527575 agtggttcaccggtgagggacttaattgatccctcaccctagaatccacc 14527624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 24666168 - 24666127
Alignment:
Q  344 cggtgaaggacttcattgagccctcaccctagaatccaccat 385  Q
    |||||| |||||| ||||| ||||||||||||||||||||||    
T  24666168 cggtgagggacttaattgatccctcaccctagaatccaccat 24666127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 384
Target Start/End: Complemental strand, 42792826 - 42792774
Alignment:
Q  332 aaagtggtacatcggtgaaggacttcattgagccctcaccctagaatccacca 384  Q
    |||||| | ||||||||| |||||| ||||  |||||||||||||||||||||    
T  42792826 aaagtgatccatcggtgagggacttaattggaccctcaccctagaatccacca 42792774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 302 - 383
Target Start/End: Complemental strand, 29594987 - 29594906
Alignment:
Q  302 atatgatcttattaaatccaacggttaaataaagtggtacatcggtgaaggacttcattgagccctcaccctagaatccacc 383  Q
    ||||| ||||||| ||||||| |   |||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||    
T  29594987 atatggtcttatttaatccaatgaccaaataaagtggtacatcggtgaagaacttaattgaaccctcaccctagaatccacc 29594906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 27345917 - 27345968
Alignment:
Q  333 aagtggtacatcggtgaaggacttcattgagccctcaccctagaatccacca 384  Q
    |||||||| |||||||| |||||| ||||| |||||||||||||||||||||    
T  27345917 aagtggtatatcggtgagggacttaattgaaccctcaccctagaatccacca 27345968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 383
Target Start/End: Original strand, 2029056 - 2029095
Alignment:
Q  344 cggtgaaggacttcattgagccctcaccctagaatccacc 383  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  2029056 cggtgagggacttaattgagccctcaccctagaatccacc 2029095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 383
Target Start/End: Original strand, 29595567 - 29595642
Alignment:
Q  308 tcttattaaatccaacggttaaataaagtggtacatcggtgaaggacttcattgagccctcaccctagaatccacc 383  Q
    ||||||| |||| || ||| ||||||| |||||||  ||||| |||||| ||||| ||||||| ||||||||||||    
T  29595567 tcttatttaatctaatggtcaaataaactggtacactggtgagggacttaattgaaccctcacgctagaatccacc 29595642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 16195123 - 16195177
Alignment:
Q  329 aataaagtggtacatcggtgaaggacttcattgagccctcaccctagaatccacc 383  Q
    ||||| |||||||| | |||| |||||| ||||| ||||||||||||||||||||    
T  16195123 aataatgtggtacaccagtgatggacttaattgatccctcaccctagaatccacc 16195177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 316 - 383
Target Start/End: Complemental strand, 3315022 - 3314955
Alignment:
Q  316 aatccaacggttaaataaagtggtacatcggtgaaggacttcattgagccctcaccctagaatccacc 383  Q
    ||||||| ||||||||||||||||||| |||||| |||||| ||||| |||||||| |||||||||||    
T  3315022 aatccaatggttaaataaagtggtacaccggtgagggacttaattgaaccctcaccgtagaatccacc 3314955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 383
Target Start/End: Original strand, 3315430 - 3315511
Alignment:
Q  302 atatgatcttattaaatccaacggttaaataaagtggtacatcggtgaaggacttcattgagccctcaccctagaatccacc 383  Q
    ||||| ||||||| ||||| | |||||||| ||||| || | |||||| |||||| |||||||||||||| |||||||||||    
T  3315430 atatggtcttatttaatccgatggttaaattaagtgttataccggtgagggacttaattgagccctcaccttagaatccacc 3315511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 383
Target Start/End: Original strand, 34808985 - 34809037
Alignment:
Q  331 taaagtggtacatcggtgaaggacttcattgagccctcaccctagaatccacc 383  Q
    |||||||||||| || |||||||||| ||||| ||||||| ||||||||||||    
T  34808985 taaagtggtacaccgatgaaggacttaattgaaccctcactctagaatccacc 34809037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 44876934 - 44876980
Alignment:
Q  335 gtggtacatcggtgaaggacttcattgagccctcaccctagaatcca 381  Q
    ||||| ||||||||| |||||| ||||| ||||||||||||||||||    
T  44876934 gtggtccatcggtgagggacttaattgatccctcaccctagaatcca 44876980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 384
Target Start/End: Complemental strand, 29388330 - 29388282
Alignment:
Q  336 tggtacatcggtgaaggacttcattgagccctcaccctagaatccacca 384  Q
    ||||||||||||||||||||| || |||||||||| |||||||||||||    
T  29388330 tggtacatcggtgaaggacttaatagagccctcactctagaatccacca 29388282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 383
Target Start/End: Original strand, 127744 - 127783
Alignment:
Q  344 cggtgaaggacttcattgagccctcaccctagaatccacc 383  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  127744 cggtgaaggacttaattgaaccctcaccctagaatccacc 127783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 383
Target Start/End: Original strand, 7754976 - 7755015
Alignment:
Q  344 cggtgaaggacttcattgagccctcaccctagaatccacc 383  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  7754976 cggtgaaggacttaattgatccctcaccctagaatccacc 7755015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 383
Target Start/End: Original strand, 29388949 - 29388996
Alignment:
Q  336 tggtacatcggtgaaggacttcattgagccctcaccctagaatccacc 383  Q
    |||||||||||||| |||||| || |||||||||||||| ||||||||    
T  29388949 tggtacatcggtgagggacttaatagagccctcaccctaaaatccacc 29388996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 387
Target Start/End: Complemental strand, 1141350 - 1141296
Alignment:
Q  333 aagtggtacatcggtgaaggacttcattgagccctcaccctagaatccaccataa 387  Q
    ||||||| || |||||| |||||||||||  |||||||| |||||||||||||||    
T  1141350 aagtggtccaccggtgagggacttcattgctccctcaccttagaatccaccataa 1141296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 383
Target Start/End: Complemental strand, 3203921 - 3203861
Alignment:
Q  324 ggttaaataaagtggtacatcggtgaaggacttcattgagc-cctcaccctagaatccacc 383  Q
    ||||||||  ||||||||||||||||||||||| ||||| | | | |||||||||||||||    
T  3203921 ggttaaatttagtggtacatcggtgaaggacttaattgacctctttaccctagaatccacc 3203861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 385
Target Start/End: Complemental strand, 32772174 - 32772098
Alignment:
Q  309 cttattaaatccaacggttaaataaagtggtacatcggtgaaggacttcattgagccctcaccctagaatccaccat 385  Q
    |||||| |||| || ||| || ||||||||||||||||||| || ||| |||||||||||||| ||||||| |||||    
T  32772174 cttatttaatctaatggtcaattaaagtggtacatcggtgaggggcttaattgagccctcaccttagaatctaccat 32772098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 383
Target Start/End: Complemental strand, 27745608 - 27745556
Alignment:
Q  331 taaagtggtacatcggtgaaggacttcattgagccctcaccctagaatccacc 383  Q
    |||||||||| |||||||| |||||| ||||| |||||||| |||||||||||    
T  27745608 taaagtggtatatcggtgagggacttaattgaaccctcaccttagaatccacc 27745556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 6942262 - 6942191
Alignment:
Q  311 tattaaatccaacggttaaataaagtggtacatcggtgaaggacttcattgagccctcaccctagaatccac 382  Q
    |||| |||| ||||||  ||||||||||| || || |||||||||| ||||| |||||||| ||||||||||    
T  6942262 tatttaatctaacggtggaataaagtggttcaccgatgaaggacttaattgatccctcaccttagaatccac 6942191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 383
Target Start/End: Complemental strand, 39682358 - 39682319
Alignment:
Q  344 cggtgaaggacttcattgagccctcaccctagaatccacc 383  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  39682358 cggtgaaggacttgatagagccctcaccctagaatccacc 39682319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 383
Target Start/End: Original strand, 43552993 - 43553040
Alignment:
Q  336 tggtacatcggtgaaggacttcattgagccctcaccctagaatccacc 383  Q
    |||| |||||||||||||||| ||||| ||||||||||| ||||||||    
T  43552993 tggtccatcggtgaaggacttaattgatccctcaccctataatccacc 43553040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 16449594 - 16449553
Alignment:
Q  344 cggtgaaggacttcattgagccctcaccctagaatccaccat 385  Q
    |||||| |||||| ||||| ||||||||||||||||||||||    
T  16449594 cggtgagggacttaattgaaccctcaccctagaatccaccat 16449553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 16459168 - 16459127
Alignment:
Q  344 cggtgaaggacttcattgagccctcaccctagaatccaccat 385  Q
    |||||| |||||| ||||| ||||||||||||||||||||||    
T  16459168 cggtgagggacttaattgaaccctcaccctagaatccaccat 16459127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 24455822 - 24455867
Alignment:
Q  336 tggtacatcggtgaaggacttcattgagccctcaccctagaatcca 381  Q
    |||| ||||| |||||||| | ||||||||||||||||||||||||    
T  24455822 tggttcatcgatgaaggacataattgagccctcaccctagaatcca 24455867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 383
Target Start/End: Original strand, 16911047 - 16911094
Alignment:
Q  336 tggtacatcggtgaaggacttcattgagccctcaccctagaatccacc 383  Q
    ||||||| |||||| |||||| ||||||||||||||||||||||||||    
T  16911047 tggtacaccggtgagggacttaattgagccctcaccctagaatccacc 16911094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 385
Target Start/End: Complemental strand, 5434080 - 5434030
Alignment:
Q  335 gtggtacatcggtgaaggacttcattgagccctcaccctagaatccaccat 385  Q
    ||||| || ||||||||||||| ||||  ||||||||||||||||||||||    
T  5434080 gtggtccaccggtgaaggacttaattggaccctcaccctagaatccaccat 5434030  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 385
Target Start/End: Complemental strand, 20807984 - 20807935
Alignment:
Q  336 tggtacatcggtgaaggacttcattgagccctcaccctagaatccaccat 385  Q
    ||||||| |||||| |||||| ||||| ||||||||||||||||||||||    
T  20807984 tggtacaccggtgagggacttaattgaaccctcaccctagaatccaccat 20807935  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 54308526 - 54308454
Alignment:
Q  310 ttattaaatccaacggttaaataaagtggtacatcggtgaaggacttcattgagccctcaccctagaatccac 382  Q
    ||||| |||| |||||| |||  ||||||| || |||||| |||||| ||||| |||||||||||||||||||    
T  54308526 ttatttaatctaacggtcaaaataagtggttcaccggtgagggacttaattgaaccctcaccctagaatccac 54308454  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 383
Target Start/End: Complemental strand, 47808404 - 47808362
Alignment:
Q  341 catcggtgaaggacttcattgagccctcaccctagaatccacc 383  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||    
T  47808404 catcggtgagggacttgattgatccctcaccctagaatccacc 47808362  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 385
Target Start/End: Complemental strand, 3584055 - 3584003
Alignment:
Q  333 aagtggtacatcggtgaaggacttcattgagccctcaccctagaatccaccat 385  Q
    |||||||||| |||||| ||| || ||||  ||||||||||||||||||||||    
T  3584055 aagtggtacaccggtgagggatttaattgctccctcaccctagaatccaccat 3584003  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 384
Target Start/End: Original strand, 4706957 - 4707005
Alignment:
Q  336 tggtacatcggtgaaggacttcattgagccctcaccctagaatccacca 384  Q
    ||||||| |||||| |||||| || || |||||||||||||||||||||    
T  4706957 tggtacaccggtgagggacttaatagaaccctcaccctagaatccacca 4707005  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 383
Target Start/End: Complemental strand, 34423424 - 34423374
Alignment:
Q  333 aagtggtacatcggtgaaggacttcattgagccctcaccctagaatccacc 383  Q
    ||||||||||||||||| |||||| ||||  ||||||| ||||||||||||    
T  34423424 aagtggtacatcggtgagggacttaattgctccctcacactagaatccacc 34423374  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 383
Target Start/End: Original strand, 34423571 - 34423619
Alignment:
Q  335 gtggtacatcggtgaaggacttcattgagccctcaccctagaatccacc 383  Q
    ||||||||||||||| |||||| ||||   |||||||||||||||||||    
T  34423571 gtggtacatcggtgagggacttaattgcttcctcaccctagaatccacc 34423619  T

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Target: scaffold0627 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 383
Target Start/End: Complemental strand, 6512 - 6464
Alignment:
Q  335 gtggtacatcggtgaaggacttcattgagccctcaccctagaatccacc 383  Q
    ||||| ||||||||| |||||| ||||| |||||||||||||| |||||    
T  6512 gtggtccatcggtgagggacttaattgaaccctcaccctagaacccacc 6464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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