View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0619_low_8 (Length: 478)
Name: NF0619_low_8
Description: NF0619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0619_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 127 - 466
Target Start/End: Complemental strand, 19100689 - 19100350
Alignment:
| Q |
127 |
tttgcttaaaccaacaactctttcactggagggaacgtaaccgacatgacacttgacctggaatggaagcatgcatgactcgcaataggaaaacaagtca |
226 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19100689 |
tttgcttaaaccaacaactctttcactggagggaacgtaaccgacatgacacttgacctggaatggaagcatgcatgactcgcaataggaaaacaagtca |
19100590 |
T |
|
| Q |
227 |
atatctctaacaatcacaagtccacctgctccaccagcatggccaactctattatctaatccagcttcagggaataaagcaccttcaacaatgtccttca |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
19100589 |
atatctctaacaatcacaagtccacctgctccaccagcatggccaactctattatctaaaccagcttcagggaataaagcaccttcaacaatgtccttca |
19100490 |
T |
|
| Q |
327 |
ccttttgcctgtaacctagaagaagatagatctcattatgattagtaatggcagtattgaagaatatattataatttttaattcagtgcagggtaatgtg |
426 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19100489 |
ccttttgcctgtaacctagaagaagatagatctcattatgattagtaatggcagtattgaagaatatattataatttttaattcagtgcagggtaatgtg |
19100390 |
T |
|
| Q |
427 |
gagtgccagtggataataaaagcctccccgcggcaacagc |
466 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
19100389 |
gagtgccagtggataataaaagcctccccgcggcaacagc |
19100350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 127 - 466
Target Start/End: Complemental strand, 21961205 - 21960866
Alignment:
| Q |
127 |
tttgcttaaaccaacaactctttcactggagggaacgtaaccgacatgacacttgacctggaatggaagcatgcatgactcgcaataggaaaacaagtca |
226 |
Q |
| |
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|||||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||| ||| |||| ||||||||||||||||||| |
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| T |
21961205 |
tttgcttaaaccgataactctttcaccagagggaacgtaaccaacatgacacttgacctgaaatgggagcacgcaagacttgcaataggaaaacaagtca |
21961106 |
T |
|
| Q |
227 |
atatctctaacaatcacaagtccacctgctccaccagcatggccaactctattatctaatccagcttcagggaataaagcaccttcaacaatgtccttca |
326 |
Q |
| |
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| |||||| |||| |||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||| ||| |||||||||| |
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| T |
21961105 |
agatctctggcaataacaagtccacctgctccaccagcatgaccaactctattatctagtacagcttcagggaataaagcaccttgaactatgtccttca |
21961006 |
T |
|
| Q |
327 |
ccttttgcctgtaacctagaagaagatagatctcattatgattagtaatggcagtattgaagaatatattataatttttaattcagtgcagggtaatgtg |
426 |
Q |
| |
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||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||| |
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|
| T |
21961005 |
ccttttgcctgtaacctggaagaagatagatctcgttatgattagtaatggcagtattgaagaatacattataattttcaattcagtgcagtgtaatgtg |
21960906 |
T |
|
| Q |
427 |
gagtgccagtggataataaaagcctccccgcggcaacagc |
466 |
Q |
| |
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| ||||||||||||||||||||||||||||| |||||||| |
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|
| T |
21960905 |
gtgtgccagtggataataaaagcctccccgcagcaacagc |
21960866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 128 - 343
Target Start/End: Original strand, 3637554 - 3637772
Alignment:
| Q |
128 |
ttgcttaaaccaacaactctttcactggagggaacgtaaccgacatgacacttgacctggaatggaagcatgcatgactcgcaataggaaaacaagtcaa |
227 |
Q |
| |
|
|||||||| ||||||||||||| | || || ||||||||||||||||| ||||| ||||| || |||| || || || || |||||| | | ||||| |
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|
| T |
3637554 |
ttgcttaatccaacaactctttggccagaagggacgtaaccgacatgacatttgacttggaaaggtagcaaacaagattcacagtaggaatagaggtcaa |
3637653 |
T |
|
| Q |
228 |
tatctctaacaatcacaagtccacctgctccaccagcatggccaactctattat---ctaatccagcttcagggaataaagcaccttcaacaatgtcctt |
324 |
Q |
| |
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| |||| |||||||||||||| ||||| ||||||||||| || | | |||||| ||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
3637654 |
tgtctcggacaatcacaagtccgcctgcaccaccagcatgaccgattttattattatctatgccagcttcaggaaataaagcaccttcaacaatgtcctt |
3637753 |
T |
|
| Q |
325 |
caccttttgcctgtaacct |
343 |
Q |
| |
|
||| ||||| || |||||| |
|
|
| T |
3637754 |
cactttttgtctataacct |
3637772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 164 - 343
Target Start/End: Original strand, 5319040 - 5319225
Alignment:
| Q |
164 |
taaccgacatgacacttgacctggaatggaagcatgcatgactcgcaataggaaaacaagtcaatatctctaacaatcacaagtccacctgctccaccag |
263 |
Q |
| |
|
||||| |||||||||||||| || ||||| | || ||| ||||| ||||| || | | |||||||||||| |||||||||||||||||| ||||||| |
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| T |
5319040 |
taacctacatgacacttgacttgaaatggtaacaagcaagactcacaataagagtagaggtcaatatctctcacaatcacaagtccacctactccacctc |
5319139 |
T |
|
| Q |
264 |
catggccaactctattat------ctaatccagcttcagggaataaagcaccttcaacaatgtccttcaccttttgcctgtaacct |
343 |
Q |
| |
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|||| |||| | |||||| ||| ||| ||||||||||||| |||||||||| |||||||||||| |||||||| |||||| |
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|
| T |
5319140 |
catgaccaattttattattattatctaggccatcttcagggaataatgcaccttcaataatgtccttcacattttgcctataacct |
5319225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 48193773 - 48193874
Alignment:
| Q |
29 |
actttttatggtatacttttggattcaattcaaaatgaagtggccagccaattcaccnnnnnnnnnnnnntgaagtgagcgcagcctgtagttatttatt |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
48193773 |
actttttatggtatacttttggattcaattcaaaatgaagtggccagccaattcaccaaaaaaataaaaatgaagtgagcgcagcctgtagttatttatt |
48193872 |
T |
|
| Q |
129 |
tg |
130 |
Q |
| |
|
|| |
|
|
| T |
48193873 |
tg |
48193874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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