View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0620_low_2 (Length: 490)
Name: NF0620_low_2
Description: NF0620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0620_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 46 - 371
Target Start/End: Original strand, 43407738 - 43408057
Alignment:
| Q |
46 |
cttcattccctttctctaatatatatcttgacatgaatgatatcttctgatctttttatataggaggatctgagaaagaactttaattataaggatggaa |
145 |
Q |
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| T |
43407738 |
cttcattccctttctctaatatatatcatgacatgaatgatatcttctgatctttttatataggaggatctgagaaacaactttaattataaggatggaa |
43407837 |
T |
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| Q |
146 |
tatggtggtgggttagtggctgacggtggtgtgtttggaccgatggtgnnnnnnnnnnnnnnnnnnnnnnatcaagcagatataattgaggagctcttgg |
245 |
Q |
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| T |
43407838 |
tatggtggtgggttagtggctgacggtggtgtgtttggaccgatggtgggaggaggaggaggag------atcaagcagatataattgaggagctgttgg |
43407931 |
T |
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| Q |
246 |
gagaaggttgctggattgaagcaagtgagaacagtttgatgtccatgcagcaaactacgccacaatcacaatacatgtccaacaataataatattcctat |
345 |
Q |
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| T |
43407932 |
gagaaggttgctggattgaagcaagtgagaatagtttgatggccatgcagcaaactacgccacaatcacaatacatgtccaacaataataatattcctat |
43408031 |
T |
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| Q |
346 |
gggaatgggagagggagatcacttca |
371 |
Q |
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| T |
43408032 |
gggaatgggagagggagatcacttca |
43408057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 397 - 453
Target Start/End: Original strand, 43408095 - 43408151
Alignment:
| Q |
397 |
aatggaatgcactgctccagcagcaaatcatgatgatcagcaggaaagtggttttgt |
453 |
Q |
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| T |
43408095 |
aatggaatgcactgctccagcagcaaatcatgatgatcagcaggaaagtggttttgt |
43408151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 448 - 490
Target Start/End: Complemental strand, 41649727 - 41649685
Alignment:
| Q |
448 |
ttttgtatggtgagagatgatagtttaattacgtcaaatctta |
490 |
Q |
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| T |
41649727 |
ttttgtatggtgagagatgatagtttaattacgtcaaatctta |
41649685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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