View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0620_low_3 (Length: 449)
Name: NF0620_low_3
Description: NF0620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0620_low_3 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 4 - 449
Target Start/End: Original strand, 2325807 - 2326251
Alignment:
| Q |
4 |
ctttgttccatttaacagatggtaatacatgtctcaccgcctttcgcgcacacactatatatccatccatagttattattaa-tcatatcccctagttct |
102 |
Q |
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||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| |
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| T |
2325807 |
ctttgttccatttaagagggggtaatacatgtctcaccacctttcgcgcacacactatat--ccatccatacttattattaaatcatatcccctagttct |
2325904 |
T |
|
| Q |
103 |
catcatccatcctttggtttatacacacactatcacgtaagaagagtaaatcatttgaataaaacttttacgtgatggtaacatggttcatcgtcctcat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2325905 |
catcatccatcctttggtttatacacacactatcacgtaaaaagagtaaatcatttgaataaaacttttacgtgatggaaacatggttcatcgtcctcat |
2326004 |
T |
|
| Q |
203 |
tactctttgcatcatcctcctcgtcaaagccattctctcctccttcacaaccaccgtacccctccctcccagcccaccacacatccccatcatcataagc |
302 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2326005 |
tactctttgcatcatcttcctcgtcaaagccattctctcctccttcacaaccaccgtacccctccctcccagcccaccacacatccccatcatcacaagc |
2326104 |
T |
|
| Q |
303 |
atacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctacatgccaaacatggtcctatcatcaatcttaatatcggctccagac |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326105 |
atacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagac |
2326204 |
T |
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| Q |
403 |
cttccatttacatctccgaccgtgctctggcccaccacgctctcgtt |
449 |
Q |
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| T |
2326205 |
cttccatttacatctccgaccgtgctctggcccaccacgccctcgtt |
2326251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 177 - 449
Target Start/End: Original strand, 2320125 - 2320397
Alignment:
| Q |
177 |
atggtaacatggttcatcgtcctcattactctttgcatcatcctcctcgtcaaagccattctctcctccttcacaaccaccgtacccctccctcccagcc |
276 |
Q |
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|||| ||||||||||||||||||| |||| || ||||||||| |||| ||| |||||| ||||||| |||||||||||||||||||||||||||| ||| |
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| T |
2320125 |
atggaaacatggttcatcgtcctcgttacgctatgcatcatcttccttatcagagccatcctctccttcttcacaaccaccgtacccctccctcccggcc |
2320224 |
T |
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| Q |
277 |
caccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctacatgccaaacatggtcctat |
376 |
Q |
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| T |
2320225 |
ctctacacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctat |
2320324 |
T |
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| Q |
377 |
catcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgtt |
449 |
Q |
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||||| | | ||||||| || |||||||||||| |||| ||||| ||||||||| ||||| | ||||||| |
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| T |
2320325 |
catcactgtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgtt |
2320397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 164 - 449
Target Start/End: Original strand, 2302411 - 2302696
Alignment:
| Q |
164 |
aaacttttacgtgatggtaacatggttcatcgtcctcattactctttgcatcatcctcctcgtcaaagccattctctcctccttcacaaccaccgtaccc |
263 |
Q |
| |
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|||||||||| |||| |||||||||||| |||||||||||||| ||||||||| ||||| || || |||||| ||||||||||||||||||||||| |
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| T |
2302411 |
aaacttttacacaatggaaacatggttcattgtcctcattactctctgcatcatcttcctcatcggagtcattcttgcctccttcacaaccaccgtaccc |
2302510 |
T |
|
| Q |
264 |
ctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctacatgcca |
363 |
Q |
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||||||| |||| ||||||||||||||| ||| || ||| || | |||||||||| ||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
2302511 |
ttccctcctggccctccacacatccccatcctcacaaacattcagttgctccgaaaaccatcctcccaacttgaaccttttctcaaaactctccatgcca |
2302610 |
T |
|
| Q |
364 |
aacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgtt |
449 |
Q |
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|||||||||||||||||| ||| | ||||| || |||||||||||| |||| |||| ||||||||||||||| | ||||||| |
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| T |
2302611 |
aacatggtcctatcatcactctccacatcggttctcgaccttccattttcatcgatgaccatgctctggcccaccatgttctcgtt |
2302696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 182 - 449
Target Start/End: Original strand, 2309141 - 2309408
Alignment:
| Q |
182 |
aacatggttcatcgtcctcattactctttgcatcatcctcctcgtcaaagccattctctcctccttcacaaccaccgtacccctccctcccagcccacca |
281 |
Q |
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|||||||||||| |||||| ||||||| ||||||||| |||| ||| |||||| ||||||| |||||||||||| ||||||||||||||| |||| | | |
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| T |
2309141 |
aacatggttcatagtcctcgttactctctgcatcatcttccttatcagagccatgctctccttcttcacaaccactgtacccctccctcccggccctcta |
2309240 |
T |
|
| Q |
282 |
cacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctacatgccaaacatggtcctatcatca |
381 |
Q |
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|||||||||||||||| || | | |||| ||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2309241 |
cacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatca |
2309340 |
T |
|
| Q |
382 |
atcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgtt |
449 |
Q |
| |
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| | ||||||| || ||||||||||| |||| ||||| ||||||||| ||||| | ||||||| |
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| T |
2309341 |
ttgtccatatcggttctcaaccttccattttcatcaacgaccatgctctggctcaccatgttctcgtt |
2309408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 184 - 449
Target Start/End: Original strand, 2292812 - 2293077
Alignment:
| Q |
184 |
catggttcatcgtcctcattactctttgcatcatcctcctcgtcaaagccattctctcctccttcacaaccaccgtacccctccctcccagcccaccaca |
283 |
Q |
| |
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|||||||||| |||||| ||||||||||||||||| |||| ||| |||||| ||||||| |||||||||||| |||||||||||||| |||| | ||| |
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| T |
2292812 |
catggttcattgtcctcgttactctttgcatcatcttccttatcagagccatcctctccttattcacaaccaccatacccctccctcccggccctctaca |
2292911 |
T |
|
| Q |
284 |
catccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctacatgccaaacatggtcctatcatcaat |
383 |
Q |
| |
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|||||||||||||| || | | |||| ||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
2292912 |
catccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcact |
2293011 |
T |
|
| Q |
384 |
cttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgtt |
449 |
Q |
| |
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| ||||||| || |||||||||||| ||| ||||| | ||||||||||||| | ||||||| |
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| T |
2293012 |
gtccatatcggttctcgaccttccattttcattaacgaccatactctggcccaccatgttctcgtt |
2293077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 251 - 449
Target Start/End: Original strand, 2329768 - 2329966
Alignment:
| Q |
251 |
aaccaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaa |
350 |
Q |
| |
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|||||||| | ||||||| || | |||||||| || || ||||||| |||||| |||||||| ||||||||||| |||| |||||||||||||||| | |
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|
| T |
2329768 |
aaccaccgcaaccctcccccctggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcaga |
2329867 |
T |
|
| Q |
351 |
actctacatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgtt |
449 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
2329868 |
actcttcatgccaaacatggtcctatcatcaatcttaatatcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgtt |
2329966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 449
Target Start/End: Original strand, 2350068 - 2350266
Alignment:
| Q |
251 |
aaccaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaa |
350 |
Q |
| |
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|||||||| | ||||||||||| | ||||| || |||||||| |||| ||| || | ||||||||||||||||| |||||||| ||||||||| ||||| |
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| T |
2350068 |
aaccaccgcaaccctccctcccggtccaccgcatatccccattatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaa |
2350167 |
T |
|
| Q |
351 |
actctacatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgtt |
449 |
Q |
| |
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|| || || ||||| ||||||||||||||| ||| || ||| | | | |||||||||||| ||||||||||| | |||| |||||||||||||||||| |
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| T |
2350168 |
accctccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgtt |
2350266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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