View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0620_low_4 (Length: 391)
Name: NF0620_low_4
Description: NF0620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0620_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 8e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 29 - 164
Target Start/End: Original strand, 41864166 - 41864301
Alignment:
| Q |
29 |
aggaacaacctcattttcgcacaagttcatgtgaatttaactgaacaatagcattcaaaacatgatatttgttggcaatgaacattgcttatatgtcttg |
128 |
Q |
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| T |
41864166 |
aggaacaacctcattttcgcacaagttcatgtgaatttaactgaacaatagcattcaaaacatgatatttgttggcaatgaacattgcttatatgtcttg |
41864265 |
T |
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| Q |
129 |
taaattttatttgaggcacactcaattcatcaaaca |
164 |
Q |
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| T |
41864266 |
taaattttatttgaggcacactcaattcatcaaaca |
41864301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 232 - 371
Target Start/End: Original strand, 41864393 - 41864532
Alignment:
| Q |
232 |
ccaattgatcctccctcaacctccaatattggttacctaataaaatgatgttaaattgacgtaccttagtccttacaaaccactgtaccatcttttccac |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41864393 |
ccaattgatcctccctcaacctccaatattggttacctaataaaatgatgttaaattgacgtaccttagtccttacaaacccctgtaccatcttttccac |
41864492 |
T |
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| Q |
332 |
gatttaaacacaatttatctcatttcacccaattgaccac |
371 |
Q |
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| T |
41864493 |
gatttaaacacaatttatctcatttcacccaattgaccac |
41864532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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