View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0620_low_6 (Length: 308)
Name: NF0620_low_6
Description: NF0620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0620_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 40 - 244
Target Start/End: Original strand, 45211888 - 45212096
Alignment:
| Q |
40 |
atcatttcttgcaacttttgagtaggagtattgtagagtgatatacatattgagctcggctatagattc----ttttaattttatttgagatgatgaata |
135 |
Q |
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| T |
45211888 |
atcatttcttgcaactcttgagtaggagtattgtagagtgatatacatattgagctcggctatagattcattcttttaattttatttgaggtgatgaata |
45211987 |
T |
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| Q |
136 |
tatttgttaaggtgcttccgtggatgtaggcaagaggggccaattcacataaatctctgttttacatcaaagattcatgggtgtgaggctaacttcgatg |
235 |
Q |
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| T |
45211988 |
tatttgttaaggtgcttccgtggatgtaggcaagaggtgccaattcacatcaatctctgttttacatcaaagattcatgggtgtgtggctaacttcgatg |
45212087 |
T |
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| Q |
236 |
gtctgtgct |
244 |
Q |
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| T |
45212088 |
gtgtgtgct |
45212096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 142
Target Start/End: Original strand, 15679873 - 15679903
Alignment:
| Q |
112 |
taattttatttgagatgatgaatatatttgt |
142 |
Q |
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| T |
15679873 |
taattttatttgagatgatgaatatatttgt |
15679903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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