View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0621_high_10 (Length: 323)
Name: NF0621_high_10
Description: NF0621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0621_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 295
Target Start/End: Complemental strand, 32527823 - 32527534
Alignment:
| Q |
9 |
agcaaaggatggataagactagtaatgcaagtgaaggggatgctaaacctagaaggcttttagatattgtactctcatggcccctcgaggatgttctcaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32527823 |
agcaaaggatggataagactagtaatgcaagtgaaggagatgctaaacctagaaggcttttagatattgtactctcatggcccctcgaggatgttctcaa |
32527724 |
T |
|
| Q |
109 |
cgaaaatctttacaaacacaaggtttcatttacaccttttgaacactcacaatgaaaacttgtgttgaaatctttacta-ttttgtagattctttccaag |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32527723 |
cgaaaatctttacaaacacaaggtttcatttacaccttttgaacactcacaatgaaaacttgtgttgaaatctttactatttttgtagattctttccaaa |
32527624 |
T |
|
| Q |
208 |
ttta--tttacggtaatttaaagattttctcgactaggggtaaatcttattcgagcaaagtgggaaatgagtattagaactgcatttcat |
295 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32527623 |
tttatttttacggtaatttaaagattttctcgactaggggtaaatcttatttgagcaaagtgggaaatgagtattagaactgcatttcat |
32527534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 32566129 - 32566287
Alignment:
| Q |
9 |
agcaaaggatggataagactagtaatgcaagtgaaggggatgctaaacctagaaggcttttagatattgtactctcatggcccctcgaggatgttctcaa |
108 |
Q |
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||||||||||||| |||||||| |||| |||||||| | || ||||| | || ||| |||||||||||||||| ||| |||||||||||| |||||| |
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| T |
32566129 |
agcaaaggatggagaagactagaaatggaagtgaagagaatcttaaactcgggagtcttatagatattgtactctcttggaccctcgaggatgctctcaa |
32566228 |
T |
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| Q |
109 |
cgaaaatctttacaaacacaaggtttcatttaca-ccttttgaacactcacaatgaaaa |
166 |
Q |
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||||||||||||||| |||||||||| |||||| ||||| ||||||| ||||||||| |
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| T |
32566229 |
tgaaaatctttacaaagacaaggtttcttttacaccctttacaacactcgcaatgaaaa |
32566287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 32648243 - 32648145
Alignment:
| Q |
69 |
tagatattgtactctcatggcccctcgaggatgttctcaacgaaaatctttacaaacacaaggtttcatttaca-ccttttgaacactcacaatgaaaa |
166 |
Q |
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||||||||||||| || ||| ||||||||||||||||||| ||||||||||||||| |||||||||| |||||| |||||| || |||||||||||||| |
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| T |
32648243 |
tagatattgtactttcttggaccctcgaggatgttctcaatgaaaatctttacaaagacaaggtttcttttacacccttttcaatactcacaatgaaaa |
32648145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 32534064 - 32534004
Alignment:
| Q |
75 |
ttgtactctcatggcccctcgaggatgttctcaacgaaaatctttacaaacacaaggtttc |
135 |
Q |
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|||||||||||||| || |||||||||| | |||||||||||||||||| |||||||||| |
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| T |
32534064 |
ttgtactctcatggacctacgaggatgttttgaacgaaaatctttacaaagacaaggtttc |
32534004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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