View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0621_high_2 (Length: 866)

Name: NF0621_high_2
Description: NF0621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0621_high_2
NF0621_high_2
[»] chr4 (22 HSPs)
chr4 (11-251)||(37245896-37246136)
chr4 (15-251)||(32577096-32577331)
chr4 (18-247)||(29655717-29655945)
chr4 (26-251)||(21321430-21321655)
chr4 (11-251)||(28537831-28538069)
chr4 (13-251)||(56065532-56065770)
chr4 (18-251)||(49951216-49951449)
chr4 (15-251)||(28426099-28426322)
chr4 (15-251)||(49119448-49119671)
chr4 (49-251)||(18442227-18442429)
chr4 (11-251)||(51735016-51735255)
chr4 (14-244)||(43840353-43840584)
chr4 (13-251)||(41835357-41835595)
chr4 (14-250)||(51259576-51259813)
chr4 (14-251)||(55734912-55735149)
chr4 (13-251)||(2064756-2064994)
chr4 (15-127)||(26422650-26422762)
chr4 (639-696)||(53357293-53357350)
chr4 (14-130)||(47226377-47226493)
chr4 (548-612)||(53354743-53354807)
chr4 (11-61)||(24989977-24990027)
chr4 (492-534)||(53354672-53354714)
[»] chr5 (20 HSPs)
chr5 (15-251)||(22767305-22767541)
chr5 (13-248)||(8387992-8388227)
chr5 (13-247)||(27532952-27533187)
chr5 (13-251)||(4268002-4268240)
chr5 (13-251)||(20204858-20205096)
chr5 (13-251)||(27292337-27292575)
chr5 (14-251)||(12660219-12660456)
chr5 (13-251)||(25730711-25730949)
chr5 (13-251)||(26597503-26597741)
chr5 (11-251)||(41940781-41941021)
chr5 (14-243)||(15988796-15989025)
chr5 (13-250)||(11375559-11375796)
chr5 (11-221)||(34652298-34652507)
chr5 (49-251)||(37448028-37448230)
chr5 (256-404)||(26031480-26031626)
chr5 (156-243)||(30222988-30223075)
chr5 (266-318)||(36855265-36855318)
chr5 (266-325)||(10240701-10240761)
chr5 (13-123)||(32632546-32632656)
chr5 (420-453)||(36855354-36855387)
[»] chr7 (15 HSPs)
chr7 (15-247)||(9328650-9328881)
chr7 (13-251)||(16731836-16732074)
chr7 (13-251)||(17709970-17710208)
chr7 (13-251)||(16098393-16098631)
chr7 (13-251)||(22289144-22289382)
chr7 (14-251)||(30493657-30493893)
chr7 (11-218)||(29200999-29201208)
chr7 (45-250)||(17877312-17877517)
chr7 (59-251)||(1581518-1581711)
chr7 (49-213)||(30824557-30824720)
chr7 (12-106)||(3275082-3275176)
chr7 (126-227)||(34578437-34578538)
chr7 (420-477)||(20878260-20878316)
chr7 (420-477)||(28031464-28031520)
chr7 (361-402)||(31446949-31446990)
[»] chr8 (12 HSPs)
chr8 (13-247)||(7127130-7127364)
chr8 (13-247)||(8451169-8451403)
chr8 (13-247)||(478102-478336)
chr8 (13-251)||(23853835-23854073)
chr8 (13-220)||(185637-185842)
chr8 (15-251)||(13414926-13415162)
chr8 (15-177)||(40588778-40588940)
chr8 (14-243)||(37711990-37712214)
chr8 (48-139)||(9496797-9496887)
chr8 (420-460)||(7888558-7888598)
chr8 (14-67)||(598284-598337)
chr8 (13-102)||(3606785-3606874)
[»] chr1 (17 HSPs)
chr1 (13-251)||(25682554-25682792)
chr1 (13-251)||(44527156-44527394)
chr1 (13-246)||(36733604-36733837)
chr1 (14-234)||(48166157-48166377)
chr1 (13-251)||(48949770-48950008)
chr1 (11-251)||(51113218-51113458)
chr1 (13-251)||(4395062-4395299)
chr1 (13-247)||(52109361-52109594)
chr1 (13-251)||(5609242-5609480)
chr1 (13-251)||(16816846-16817083)
chr1 (13-140)||(44602766-44602893)
chr1 (120-250)||(24538414-24538544)
chr1 (251-401)||(22572109-22572257)
chr1 (14-64)||(2885313-2885363)
chr1 (420-478)||(8904841-8904899)
chr1 (273-325)||(8904759-8904812)
chr1 (420-485)||(14615076-14615140)
[»] chr2 (15 HSPs)
chr2 (13-251)||(88462-88700)
chr2 (13-219)||(44017364-44017570)
chr2 (13-232)||(34695950-34696167)
chr2 (13-232)||(34718362-34718579)
chr2 (18-251)||(12130689-12130922)
chr2 (51-251)||(18345571-18345770)
chr2 (70-173)||(9709910-9710013)
chr2 (12-210)||(26198637-26198824)
chr2 (11-140)||(1418025-1418154)
chr2 (13-88)||(22845602-22845677)
chr2 (15-73)||(9710036-9710094)
chr2 (14-85)||(13109916-13109987)
chr2 (16-108)||(14827126-14827218)
chr2 (344-403)||(6298926-6298985)
chr2 (272-318)||(11673478-11673525)
[»] chr6 (8 HSPs)
chr6 (12-251)||(15606039-15606278)
chr6 (13-234)||(28107059-28107280)
chr6 (11-161)||(19690923-19691073)
chr6 (13-251)||(14680062-14680303)
chr6 (16-177)||(30802040-30802201)
chr6 (14-222)||(15053222-15053430)
chr6 (13-209)||(29368102-29368296)
chr6 (13-174)||(11731715-11731873)
[»] chr3 (14 HSPs)
chr3 (13-220)||(42340323-42340530)
chr3 (13-251)||(53496935-53497173)
chr3 (14-251)||(55199414-55199651)
chr3 (63-241)||(647307-647485)
chr3 (13-109)||(647209-647305)
chr3 (13-251)||(46007204-46007440)
chr3 (102-223)||(27941129-27941250)
chr3 (45-140)||(11020258-11020353)
chr3 (18-248)||(48227319-48227550)
chr3 (79-250)||(2615397-2615568)
chr3 (11-91)||(24176833-24176913)
chr3 (419-474)||(33633710-33633765)
chr3 (13-63)||(27608949-27608999)
chr3 (13-63)||(34497418-34497468)
[»] scaffold0446 (1 HSPs)
scaffold0446 (13-251)||(89-327)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 2e-85; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 37245896 - 37246136
Alignment:
Q  11 cagagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcg 110  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||     
T  37245896 cagagacgaaagagcttgcactaaagtagcagagtcagactcgaagacaacccggtcccatctgttcacataagcaaagtgaatagcatcgagtaaggct 37245995  T
Q  111 attgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatg 210  Q
    | ||||||||||||||||||||||||||||  |||||||||||| ||||| ||| ||||||||| ||| |||||||||||||| ||||||||| | ||||    
T  37245996 actgcctccccctccaaaactgtcatatttgcccgtttccatttcgtttgtgcccgaataaatttccctcgggagtctctaacacaacatgcagaggatg 37246095  T
Q  211 taagatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    ||||| | ||||||||| |||||||| ||||||||||||||    
T  37246096 taagacgattacggtcatggaacgcggcatccacattgcac 37246136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 32577096 - 32577331
Alignment:
Q  15 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 114  Q
    |||||| |||||||||||| ||||||||| ||||||||||||||||||| ||||||| |||| ||||||||||| | ||||||| |||||||||| | |     
T  32577096 gacgattgagcttgcactagagtagcagagtcagactcgaagacaacccagtcccatatgtttacatcagcaaagtaaatagcagcgagtaaggctagta 32577195  T
Q  115 cctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaag 214  Q
    |||||||||||||||| |||||||||  ||||| |||||| ||||||||| |||||||||| |||||||| |||||||| ||||| ||||||||||||||    
T  32577196 cctccccctccaaaacagtcatatttgcccgttgccatttcgtttgagcccgaataaattg-ccccgggaatctctaacacaacacgcaaaagatgtaag 32577294  T
Q  215 atggttacggtcaaggaacgcgacatccacattgcac 251  Q
    ||||||| ||||| |||||||  ||||||||||||||    
T  32577295 atggttaaggtcatggaacgcagcatccacattgcac 32577331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 29655717 - 29655945
Alignment:
Q  18 gatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcct 117  Q
    |||||||||||||||| ||||||  | ||||||||||||||||| |||| ||||||||||||||||||||| |||||  ||||||||||||| | |||||    
T  29655717 gatagagcttgcactagagtagcgtagtcagactcgaagacaacacggttccatctgttcacatcagcaaagtgaatgacatcgagtaaggctactgcct 29655816  T
Q  118 ccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatg 217  Q
    | ||||||||||| |||||||||  ||| | |||||||||||||||| ||||||||||||| |||||| ||||||| |||||  |||||||||||||| |    
T  29655817 ctccctccaaaacagtcatatttgcccgctgccattttgtttgagcccgaataaattgcccacgggagcctctaacacaaca-acaaaagatgtaagagg 29655915  T
Q  218 gttacggtcaaggaacgcgacatccacatt 247  Q
    |||||| ||| |||||||| ||||||||||    
T  29655916 gttacgatcatggaacgcggcatccacatt 29655945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 26 - 251
Target Start/End: Complemental strand, 21321655 - 21321430
Alignment:
Q  26 ttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctcc 125  Q
    |||||||| |||||  || || |||||||||||||||||||||||||||||  |||||| ||| ||||  || ||||||||||| |||| ||||||||||    
T  21321655 ttgcactagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcagaaaagtgaagggcctcgagtaaggctattgtctccccctcc 21321556  T
Q  126 aaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggt 225  Q
    |||||||||||||||  ||||| |||||| ||||||||| ||||||||| ||| || ||||||||||  ||||||||||||| ||||| |||||||||||    
T  21321555 aaaactgtcatatttgcccgttgccatttcgtttgagcccgaataaatttcccgcgagagtctctaatacaacatgcaaaagttgtaatatggttacggt 21321456  T
Q  226 caaggaacgcgacatccacattgcac 251  Q
    || ||||||| |||||||||||||||    
T  21321455 catggaacgcaacatccacattgcac 21321430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 28537831 - 28538069
Alignment:
Q  11 cagagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcg 110  Q
    |||||||||||||||||||||||||||||  || || |||| ||| ||||||||||||||||||||| ||||| |||| ||||  || |||||||||||     
T  28537831 cagagacgatagagcttgcactaaagtagatgagtcggacttgaacacaacccggtcccatctgttcgcatcaacaaagtgaagggcctcgagtaaggct 28537930  T
Q  111 attgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatg 210  Q
    | ||||||||||||  ||||| ||||||||| ||| | |||||| ||||||||| |||||||||||||  ||||||||||||| ||||| |||||| |||    
T  28537931 actgcctccccctc--aaactatcatattttcccgctgccatttcgtttgagcccgaataaattgcccgtgggagtctctaacacaacacgcaaaatatg 28538028  T
Q  211 taagatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    ||| ||||||||| ||| |||||||  ||||||||||||||    
T  28538029 taatatggttacgatcatggaacgcagcatccacattgcac 28538069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 56065770 - 56065532
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    |||| ||||| |||||||||| |||||| || || |||||||||||||||||||||||| | ||| || ||||||| ||||| |||||||||||||| |     
T  56065770 gagatgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatatattcccaacagcaaagtgaatggcatcgagtaaggcaac 56065671  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    ||||||||||||||||||||||||||||   ||||  ||||| ||||||||| |||| |||||||| |||||||||||||  ||||| || |||||||||    
T  56065670 tgcctccccctccaaaactgtcatatttgctcgttgtcatttcgtttgagcccgaatgaattgcccacgggagtctctaaaacaacacgcgaaagatgta 56065571  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    | ||| | ||||||| | ||| |||||||||||||||||    
T  56065570 atatgttgacggtcatgaaacacgacatccacattgcac 56065532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 49951449 - 49951216
Alignment:
Q  18 gatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcct 117  Q
    |||| ||||||||||| |||||  || || |||||||||||||| |||| |||||||||| |||||||||| ||||  || ||||||||||| | |||||    
T  49951449 gataaagcttgcactagagtagacgagtcggactcgaagacaactcggttccatctgttcgcatcagcaaagtgaagggcctcgagtaaggctactgcct 49951350  T
Q  118 ccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatg 217  Q
    |||||||||| ||||||||||||  ||| | |||||| ||||||||| |||||||||| || || || |||||||| || |||||||||||||||| |||    
T  49951349 ccccctccaatactgtcatatttgcccgctgccatttcgtttgagcccgaataaattggccgcgagaatctctaacacagcatgcaaaagatgtaatatg 49951250  T
Q  218 gttacggtcaaggaacgcgacatccacattgcac 251  Q
    ||| |||||| |||| ||| ||||||||||||||    
T  49951249 gttgcggtcatggaatgcggcatccacattgcac 49951216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 28426322 - 28426099
Alignment:
Q  15 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 114  Q
    |||||||||||| |||||| |||| |||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| | ||    
T  28426322 gacgatagagctggcactagagtatcagagtcagacttgaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcgagtaaggctactg 28426223  T
Q  115 cctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaag 214  Q
    |||||||||||||||| |||||||||  | ||| |||||| ||||||||| |||             ||| |||||||| |||||  |||||||||||||    
T  28426222 cctccccctccaaaacagtcatatttgcctgttgccatttcgtttgagcccgaa-------------ggaatctctaacacaacacacaaaagatgtaag 28426136  T
Q  215 atggttacggtcaaggaacgcgacatccacattgcac 251  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  28426135 atggttacggtcatggaacgcggcatccacattgcac 28426099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 49119448 - 49119671
Alignment:
Q  15 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 114  Q
    |||||||||||| |||||| |||| |||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| | ||    
T  49119448 gacgatagagctggcactagagtatcagagtcagacttgaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcgagtaaggctactg 49119547  T
Q  115 cctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaag 214  Q
    |||||||||||||||| |||||||||  | ||| |||||| ||||||||| |||             ||| |||||||| |||||  |||||||||||||    
T  49119548 cctccccctccaaaacagtcatatttgcctgttgccatttcgtttgagcccgaa-------------ggaatctctaacacaacacacaaaagatgtaag 49119634  T
Q  215 atggttacggtcaaggaacgcgacatccacattgcac 251  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  49119635 atggttacggtcatggaacgcggcatccacattgcac 49119671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 49 - 251
Target Start/End: Original strand, 18442227 - 18442429
Alignment:
Q  49 actcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttccgttt 148  Q
    ||||||| | |||||||| |||||||||| || ||||||| || |  || ||||||||||| | ||||||||||||||| ||||||||||||| ||| ||    
T  18442227 actcgaaaataacccggttccatctgttcgcaacagcaaagtgtagggcctcgagtaaggctactgcctccccctccaatactgtcatattttcccgctt 18442326  T
Q  149 ccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatccacattg 248  Q
    |||||| ||||||||| |||||||||||||  ||||||||||||| ||||| ||||||| ||||| |||||| |||||| |||||||||||||| |||||    
T  18442327 ccatttcgtttgagcccgaataaattgcccatgggagtctctaacacaacacgcaaaagttgtaatatggttgcggtcatggaacgcgacatccgcattg 18442426  T
Q  249 cac 251  Q
    |||    
T  18442427 cac 18442429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 51735016 - 51735255
Alignment:
Q  11 cagagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcg 110  Q
    ||||||||||||||||||||||| |||||  ||  | |||||||||||||| || ||| |||| |||||||||||||| ||||| ||||||||||||||     
T  51735016 cagagacgatagagcttgcactagagtagaggagcctgactcgaagacaactcg-tcctatctattcacatcagcaaagtgaatggcatcgagtaaggct 51735114  T
Q  111 attgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatg 210  Q
    | ||||||||||||||||||||||||||||   || |  ||||| |||| |||| |||||||||| |  ||| |||||||||| |||||  |||||||||    
T  51735115 actgcctccccctccaaaactgtcatatttgcacgctgtcatttcgtttaagcccgaataaattgtcaacggaagtctctaacacaacacacaaaagatg 51735214  T
Q  211 taagatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    ||||||||||||  ||| |||||||| ||||||| ||||||    
T  51735215 taagatggttacaatcatggaacgcggcatccacgttgcac 51735255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 43840353 - 43840584
Alignment:
Q  14 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaa-ggcgat 112  Q
    ||||||||||||||||| || |||||| || ||  |||||||||||| |||||| ||| |||||||||||||||| ||||| ||||||||||| ||   |    
T  43840353 agacgatagagcttgcattagagtagctgagtcgaactcgaagacaaaccggtctcatttgttcacatcagcaaagtgaatggcatcgagtaaaggttgt 43840452  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    || |||||||||||| |||||||||||| |||| | |||||| |||||| || |||||||||| || |||||||||||||| ||| | ||||||||||||    
T  43840453 tgtctccccctccaacactgtcatatttgtccgctgccatttcgtttgaccccgaataaattgtccacgggagtctctaacacaaaacgcaaaagatgta 43840552  T
Q  213 agatggttacggtcaaggaacgcgacatccac 244  Q
    ||||||||| | |||  ||||||| |||||||    
T  43840553 agatggttatgctcatagaacgcggcatccac 43840584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 41835357 - 41835595
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    |||||||||| | |||||||| |||||  |||||  ||||||||||||||||||||||||||||  |||| ||||| ||||  |  ||||||||||| |     
T  41835357 gagacgatagcgtttgcactagagtagatgaatcgaactcgaagacaacccggtcccatctgtttgcatccgcaaaatgaagggtctcgagtaaggctac 41835456  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    ||| ||||||||||||||||||||||||  | | |  ||||||||||||||| |||||||||| |  || ||||||||||| ||||| ||||||| ||||    
T  41835457 tgcatccccctccaaaactgtcatatttgccagctgtcattttgtttgagcccgaataaattgtctgcgagagtctctaacacaacacgcaaaagttgta 41835556  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    | ||||||||| |||||||||| | ||||||||||||||    
T  41835557 atatggttacgttcaaggaacgtggcatccacattgcac 41835595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 51259576 - 51259813
Alignment:
Q  14 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 113  Q
    ||||||||| |||||||||| |||||| || || ||||||||||||||| ||||| | ||| || || ||||||| |||||  ||||||||||||| | |    
T  51259576 agacgatagcgcttgcactagagtagctgagtcggactcgaagacaacctggtccgaactgatcccaacagcaaagtgaatgacatcgagtaaggcaact 51259675  T
Q  114 gcctcccc-ctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    |||||||| |||||||||||||||||||   |||| |||||| ||||||||| |||| |||||||| || ||||||||||| |||||| | |||||||||    
T  51259676 gcctcccccctccaaaactgtcatatttgctcgttgccatttcgtttgagcccgaatgaattgcccacgagagtctctaacacaacatacgaaagatgta 51259775  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgca 250  Q
    | ||| | ||||||| | |||||| |||||||||||||    
T  51259776 atatgttgacggtcatgaaacgcggcatccacattgca 51259813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 55735149 - 55734912
Alignment:
Q  14 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 113  Q
    |||||||||||||||||||| |||||  ||||| |||||||| | |||||||| |||| ||||| || || |||| ||||  || ||||||||||| | |    
T  55735149 agacgatagagcttgcactagagtagatgaatcggactcgaaaataacccggttccatgtgttcgcaacaacaaagtgaagggcctcgagtaaggctact 55735050  T
Q  114 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 213  Q
    |||||||||||||| ||||||||||||   || |||||||| ||||||||| ||| ||||||| |  ||||||||||||| ||||| |||||||||||||    
T  55735049 gcctccccctccaatactgtcatatttgctcgcttccatttcgtttgagcccgaacaaattgctcatgggagtctctaacacaacacgcaaaagatgtaa 55734950  T
Q  214 gatggttacggtcaaggaacgcgacatccacattgcac 251  Q
     ||||||  | ||| ||| |||||||||||||||||||    
T  55734949 tatggttgagatcatggagcgcgacatccacattgcac 55734912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 2064994 - 2064756
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    ||||||||||||||||  ||| |||||  || || ||||| |||||||||||   |||||||||| |||||||||| ||||  || ||||||||||| |     
T  2064994 gagacgatagagcttgggctagagtagatgagtccgactcaaagacaacccgactccatctgttctcatcagcaaagtgaagggcgtcgagtaaggctac 2064895  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    ||||||||||| ||| ||||||||||||  ||| |  ||||||||||||||| |||||||||  || |||||||||||||| ||||| ||| | ||||||    
T  2064894 tgcctcccccttcaatactgtcatatttgcccgctgtcattttgtttgagcccgaataaattatccgcgggagtctctaacacaacacgcagaggatgta 2064795  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    | ||||||||||||| |||||| | | ||||||||||||    
T  2064794 atatggttacggtcatggaacgtggcgtccacattgcac 2064756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 26422650 - 26422762
Alignment:
Q  15 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 114  Q
    ||||||||||||||||||| |||| |||| |||||||||||||||||||| ||||||||||| ||||||||||| | |||||||||||||||||| | ||    
T  26422650 gacgatagagcttgcactagagtatcagagtcagactcgaagacaacccgatcccatctgtttacatcagcaaagtaaatagcatcgagtaaggctactg 26422749  T
Q  115 cctccccctccaa 127  Q
    |||||| ||||||    
T  26422750 cctccctctccaa 26422762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 639 - 696
Target Start/End: Original strand, 53357293 - 53357350
Alignment:
Q  639 ttttctagctaatgagacacatttggatcctttggcgctcaaggagataatctagaat 696  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  53357293 ttttctagctaatgagacacatttggatcctttggagctcaaggagataatctagaat 53357350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 47226377 - 47226493
Alignment:
Q  14 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 113  Q
    |||||||||||||||| |||||||||  || || |||||||| ||||| || || ||||||||| |||||||||| |||| ||| ||||||||| | |||    
T  47226377 agacgatagagcttgctctaaagtagatgagtcggactcgaacacaactcgatctcatctgttcgcatcagcaaagtgaaaagcctcgagtaagactatt 47226476  T
Q  114 gcctccccctccaaaac 130  Q
     ||||||||||||||||    
T  47226477 acctccccctccaaaac 47226493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 548 - 612
Target Start/End: Original strand, 53354743 - 53354807
Alignment:
Q  548 tgatgttatagacttagttggaagagagttacgaaaaatctatcaaataaaaaattcaatacttg 612  Q
    |||||||| | |||| ||||||||||||||| || |||||| |||||||||||||| ||||||||    
T  53354743 tgatgttacaaacttggttggaagagagttatgacaaatctgtcaaataaaaaattgaatacttg 53354807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 24989977 - 24990027
Alignment:
Q  11 cagagacgatagagcttgcactaaagtagcagaatcagactcgaagacaac 61  Q
    |||||||| |||||||||||||| |||||| || |||||||| ||||||||    
T  24989977 cagagacggtagagcttgcactagagtagctgagtcagactcaaagacaac 24990027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 492 - 534
Target Start/End: Original strand, 53354672 - 53354714
Alignment:
Q  492 aaatagtttcatcatttctaacgcaaaaagggcatgtaggaga 534  Q
    |||||||||||||||||| |||||| |||||| ||||||||||    
T  53354672 aaatagtttcatcatttccaacgcagaaagggaatgtaggaga 53354714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 3e-78; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 22767305 - 22767541
Alignment:
Q  15 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 114  Q
    ||||||||||||||||||| |||| |||| ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| | ||    
T  22767305 gacgatagagcttgcactagagtatcagagtcaaactcgaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcgagtaaggctactg 22767404  T
Q  115 cctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaag 214  Q
    |||||||||||||||| |||||||||  ||||| |||||| ||||||||| ||||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  22767405 cctccccctccaaaacagtcatatttgcccgttgccatttcgtttgagcccgaataaattgcccccgggaatctctaacacaacacgcaaaagatgtaag 22767504  T
Q  215 atggttacggtcaaggaacgcgacatccacattgcac 251  Q
    ||| |||| |||| |||||||| ||||||||||||||    
T  22767505 atgattactgtcatggaacgcggcatccacattgcac 22767541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 8388227 - 8387992
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    |||||||||| |||||||||| |||||| || || |||||||||||||||||||||||||||||| || | ||||| ||||| |||||||||||||| |     
T  8388227 gagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatctgttcccaaccgcaaagtgaatggcatcgagtaaggcaac 8388128  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    |||||||||||||||||||||||||||| | |||| |||||| |||||||||||||| |||||||| || ||||||||||| ||||| || |||||||||    
T  8388127 tgcctccccctccaaaactgtcatatttgttcgttgccatttcgtttgagcctgaatgaattgcccacgagagtctctaacacaacacgcgaaagatgta 8388028  T
Q  213 agatggttacggtcaaggaacgcgacatccacattg 248  Q
    | ||  | ||||||| | |||||| |||||||||||    
T  8388027 atattttaacggtcatgaaacgcggcatccacattg 8387992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 27532952 - 27533187
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    ||||||||| ||  |||||||||| |||| | || |||||||| ||||||||||||||||| |||||||||||||| |||||  |||||| ||| || ||    
T  27532952 gagacgataaagtctgcactaaagaagcaaagtcggactcgaaaacaacccggtcccatctattcacatcagcaaagtgaatgacatcgaataaagctat 27533051  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgc-aaaagatgt 211  Q
    ||||||||||||||||||||| ||||||| | | | |||||| ||||||||| ||||||||||||| |||||||||||||| ||||| || |||||||||    
T  27533052 tgcctccccctccaaaactgttatattttcctgctaccatttcgtttgagcccgaataaattgcccacgggagtctctaacacaacacgcaaaaagatgt 27533151  T
Q  212 aagatggttacggtcaaggaacgcgacatccacatt 247  Q
    ||  |||||||| ||| |||||||||||||||||||    
T  27533152 aaactggttacgatcatggaacgcgacatccacatt 27533187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 4268240 - 4268002
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    |||| |||||||||||||||| |||||  || || |||||||||| |||||||||||| |||||  |||||||||| ||||  || || |||||||| |     
T  4268240 gagatgatagagcttgcactagagtagatgagtcggactcgaagaaaacccggtcccacctgttagcatcagcaaagtgaagggcctctagtaaggctac 4268141  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    ||||||||||||||||||||||||||||  ||| | |||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||    
T  4268140 tgcctccccctccaaaactgtcatatttgcccgctgccattttgtttgagcctgaataaattgcccacgagagtctctaacacaacacgcaaaagatgta 4268041  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    | ||||||||  ||||| |||||| | ||||| ||||||    
T  4268040 atatggttacaatcaagaaacgcggcgtccacgttgcac 4268002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 20205096 - 20204858
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    |||| |||||||||||||||| |||||  || || |||||||||||||| |||| |||||||||| || || |||| ||||| || ||||||||||| |     
T  20205096 gagaggatagagcttgcactagagtagatgagtcggactcgaagacaactcggttccatctgttcgcaacaacaaagtgaatggcctcgagtaaggctac 20204997  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    ||||||||||||||| ||||||||||||  ||||| |||||| ||||||||||| ||||||| ||| |||||||||||| | ||| ||| ||||||||||    
T  20204996 tgcctccccctccaatactgtcatatttgcccgttgccatttcgtttgagcctggataaatttcccgcgggagtctctagcacaaaatgtaaaagatgta 20204897  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    | ||||||| ||||| |||||||| ||||||||||||||    
T  20204896 atatggttatggtcatggaacgcggcatccacattgcac 20204858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 27292575 - 27292337
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    |||||||||||| |||||||| || ||  || ||  ||||||||||||||||||||||||||||  |||||||||| ||||  ||||| |||||||| ||    
T  27292575 gagacgatagagtttgcactagagcagatgagtcgaactcgaagacaacccggtcccatctgttatcatcagcaaagtgaagggcatctagtaaggctat 27292476  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    ||||||||||| ||||||  | |||||| |||| | |||||||||||||||| ||||||||||||| || ||||||||||| |||||||||||| |||||    
T  27292475 tgcctcccccttcaaaacaataatatttgtccgctgccattttgtttgagcccgaataaattgcccacgagagtctctaacacaacatgcaaaatatgta 27292376  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    | ||||||||  ||| |||||| ||||||||||||||||    
T  27292375 atatggttactatcatggaacgtgacatccacattgcac 27292337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 12660456 - 12660219
Alignment:
Q  14 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 113  Q
    |||||||||||||||||||| |||||| || |||||||||| || ||| ||||| ||| ||||||||| |||||| |||||  ||||||||||| | | |    
T  12660456 agacgatagagcttgcactagagtagctgagtcagactcgacgataacacggtctcatttgttcacattagcaaagtgaatgacatcgagtaagactact 12660357  T
Q  114 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 213  Q
    ||||||| ||| || ||||||||||||  ||| | |||||| ||||||||| |||||||||| ||  |  |||||||||| ||||| |||||||||||||    
T  12660356 gcctcccgctctaacactgtcatatttgcccgctgccatttcgtttgagcccgaataaattgtccatgaaagtctctaacacaacacgcaaaagatgtaa 12660257  T
Q  214 gatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    |||||||||| ||| |||||||| ||||||||||||||    
T  12660256 gatggttacgttcatggaacgcggcatccacattgcac 12660219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 25730949 - 25730711
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    ||||||||||||||||||||| |||||  || || |||||||||||||| | ||||||||||||| |||||||||| ||||  || ||||||||||| |     
T  25730949 gagacgatagagcttgcactagagtagatgagtcggactcgaagacaactcagtcccatctgttcgcatcagcaaagtgaagggcctcgagtaaggctac 25730850  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    ||||||||||||||||||||||||||||  ||| | |||||| ||||||||  ||||||||| ||| || ||| ||||||| ||||| |  |||  ||||    
T  25730849 tgcctccccctccaaaactgtcatatttgcccgctgccatttcgtttgagctcgaataaatttcccgcgtgagactctaacacaacacgtgaaaattgta 25730750  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    | ||||||||||||| ||||||||  |||||||||||||    
T  25730749 atatggttacggtcatggaacgcggaatccacattgcac 25730711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 26597503 - 26597741
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    |||||||||| |||||||||| |||||| || || |||||||||||||||||||| ||||| ||| || | ||||| ||||| |||||||||||||| |     
T  26597503 gagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtctcatctattcccaactgcaaagtgaatggcatcgagtaaggcaac 26597602  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    ||||||||||||||||| ||||||||||   |||| |||||| ||||||||| |||| ||||| || |||||||||||||| ||||| || |||||||||    
T  26597603 tgcctccccctccaaaattgtcatatttgctcgttgccatttcgtttgagcccgaatgaattgtccacgggagtctctaacacaacacgcgaaagatgta 26597702  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    | ||| | | | ||| | |||||| ||||||||||||||    
T  26597703 atatgttgatgatcatgaaacgcggcatccacattgcac 26597741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 41940781 - 41941021
Alignment:
Q  11 cagagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcg 110  Q
    |||||||||||||| |||||||| |||||  || || |||||||||||||||||||||  | ||||||||| |||||| |||||  ||| |||||||||     
T  41940781 cagagacgatagagtttgcactagagtagttgagtcggactcgaagacaacccggtccagt-tgttcacatgagcaaagtgaatgacattgagtaaggct 41940879  T
Q  111 attgcctccccctccaaaactgtcatatttttccgt-ttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagat 209  Q
    |||| ||||||||||||||||||||||||||||  | |  ||||| ||||||||  ||||||||| ||| ||||||||| |||| | |||  ||||||||    
T  41940880 attgtctccccctccaaaactgtcatatttttctatatgtcatttcgtttgagctcgaataaatttcccacgggagtctttaacactacacacaaaagat 41940979  T
Q  210 gtaagatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    ||||||| |||||||||| |||||||| ||||||||||||||    
T  41940980 gtaagatagttacggtcatggaacgcggcatccacattgcac 41941021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 15988796 - 15989025
Alignment:
Q  14 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 113  Q
    ||||||||||| |||||||| |||||| ||  | |||| ||||||||||||||||||| ||||| |||||||||| | ||  || ||||||||||  | |    
T  15988796 agacgatagagattgcactagagtagctgagacggacttgaagacaacccggtcccatatgttcgcatcagcaaagtaaagggcctcgagtaaggttact 15988895  T
Q  114 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 213  Q
    ||||||||||||||||||||||||||| |||| | |||||| ||||||||| ||||||||||| | ||  ||||||| ||  |||| ||||||| |||||    
T  15988896 gcctccccctccaaaactgtcatatttgtccgctgccatttcgtttgagcccgaataaattgctcgcgaaagtctctgacataacacgcaaaagttgtaa 15988995  T
Q  214 gatggttacggtcaaggaacgcgacatcca 243  Q
     |||||| |||||| |||||||||||||||    
T  15988996 tatggttgcggtcatggaacgcgacatcca 15989025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 11375559 - 11375796
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    ||||||||||||||||||||| | |||  ||||||||||| |||||||||||||||||| | ||  |||| ||||| ||||  || ||||||||||| |     
T  11375559 gagacgatagagcttgcactagaatagatgaatcagactcaaagacaacccggtcccatatatttgcatccgcaaaatgaagggcctcgagtaaggctac 11375658  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    || |||||||||||||||||||||||||   || | |||||| ||||||| | ||||||||  ||  || ||||||||||| ||||||||||||| ||||    
T  11375659 tgtctccccctccaaaactgtcatatttactcgctgccatttcgtttgagtccgaataaatcacctgcgagagtctctaacacaacatgcaaaagttgta 11375758  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgca 250  Q
    | ||||||||| ||| |||||||  |||||||||||||    
T  11375759 atatggttacgttcatggaacgcagcatccacattgca 11375796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 34652298 - 34652507
Alignment:
Q  11 cagagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcg 110  Q
    |||||||| |||||||||||||| |||||  || || | ||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||      
T  34652298 cagagacggtagagcttgcactagagtagtcgagtcgggctcgaagacaacccgatcccatctgttcacatcggcaaagtgaatggcatcgagtaaggtt 34652397  T
Q  111 attgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatg 210  Q
    |||  |||||| | ||| ||||||||||||   || | || ||||||||||| | | ||||||||||| |||||||||||||| |||||  |||||||||    
T  34652398 attatctccccttacaacactgtcatatttgctcgctgcc-ttttgtttgagaccggataaattgcccacgggagtctctaacacaacacacaaaagatg 34652496  T
Q  211 taagatggtta 221  Q
    |||||||||||    
T  34652497 taagatggtta 34652507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 49 - 251
Target Start/End: Complemental strand, 37448230 - 37448028
Alignment:
Q  49 actcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttccgttt 148  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||  ||||||||||||| |  |||||||| | ||| |||||||| |||   || |     
T  37448230 actcgaagacaacccggttccatctgttcacatcagcaaagtgaatgacatcgagtaaggctaccgcctcccctttcaacactgtcatgtttgcacgctg 37448131  T
Q  149 ccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatccacattg 248  Q
    |||||||||||||| | ||||| |||| || || ||||||||||| ||||||  ||| ||||||||||||||| ||||| ||||| |||||||||||| |    
T  37448130 ccattttgtttgagtccgaatacattgtccacgagagtctctaacacaacatataaacgatgtaagatggttatggtcatggaacacgacatccacatcg 37448031  T
Q  249 cac 251  Q
    |||    
T  37448030 cac 37448028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 256 - 404
Target Start/End: Original strand, 26031480 - 26031626
Alignment:
Q  256 ttctgtaggtaa--gtccgaaagacaacaattttgctgtcaatttgcattatccataggtaaatgcctatttttctatggttgaaactcttatttaaacg 353  Q
    ||||||||||||  ||| ||||||||||| |||||  ||||||||||||||||||||| ||||||||||||||||| ||| | ||| |  |||||||||     
T  26031480 ttctgtaggtaaaagtctgaaagacaacagttttgtcgtcaatttgcattatccatagttaaatgcctatttttctgtgggtaaaattactatttaaacc 26031579  T
Q  354 attacttatatatttaactacaactcagttgtctgtaactataagtggtgt 404  Q
    |    |||||||||||||||||| |||||||||||||||||||||||||||    
T  26031580 a----ttatatatttaactacaattcagttgtctgtaactataagtggtgt 26031626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 30222988 - 30223075
Alignment:
Q  156 gtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatcca 243  Q
    ||||||||| |||||||||||||  || |||||||||| ||||| ||||||||||||| |||||||| |||| |||||||||| ||||    
T  30222988 gtttgagcccgaataaattgcccatggaagtctctaacacaacacgcaaaagatgtaatatggttacagtcatggaacgcgacgtcca 30223075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 36855265 - 36855318
Alignment:
Q  266 aagtccgaaagacaacaattttgctgtcaatt-tgcattatccataggtaaatg 318  Q
    ||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  36855265 aagtctgaaagacagcaattttgctgtcaattatgcattattcataggtaaatg 36855318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 10240761 - 10240701
Alignment:
Q  266 aagtccgaaagacaacaattttgctgtcaatt-tgcattatccataggtaaatgcctattt 325  Q
    ||||| |||||||| ||||||||||||||||| |||||||||||  ||||||| |||||||    
T  10240761 aagtctgaaagacagcaattttgctgtcaattatgcattatccaggggtaaatacctattt 10240701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 32632656 - 32632546
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    ||||||||| ||||| |||||||||||  || |||||||| |||||||||||||   |||| |||  ||||| ||| ||||  || ||||||||||  ||    
T  32632656 gagacgataaagcttacactaaagtagatgagtcagactcaaagacaacccggtttaatctattcgtatcagtaaaatgaaaggcctcgagtaaggttat 32632557  T
Q  113 tgcctccccct 123  Q
    || ||||||||    
T  32632556 tgtctccccct 32632546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 420 - 453
Target Start/End: Original strand, 36855354 - 36855387
Alignment:
Q  420 ttcaattatttttaaatgaaaaaatgtcaagatt 453  Q
    ||||||||||||||||||||||| ||||||||||    
T  36855354 ttcaattatttttaaatgaaaaattgtcaagatt 36855387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 4e-71; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 9328650 - 9328881
Alignment:
Q  15 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 114  Q
    ||||||||||||||||||| |||| |||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| | ||    
T  9328650 gacgatagagcttgcactagagtatcagagtcagactccaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcgagtaaggctactg 9328749  T
Q  115 cctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaag 214  Q
    |||||||||||||||| |||||||||| ||||| |||||| ||||||||  ||||||||||  ||||||| |||||||| ||||| ||||| ||||||||    
T  9328750 cctccccctccaaaacagtcatattttcccgttgccatttcgtttgagctcgaataaattg-tcccgggaatctctaacacaacacgcaaatgatgtaag 9328848  T
Q  215 atggttacggtcaaggaacgcgacatccacatt 247  Q
    ||||||||||||| |||||||| ||||||||||    
T  9328849 atggttacggtcatggaacgcggcatccacatt 9328881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 16732074 - 16731836
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    |||| |||||||||||||||| |||||  || || |||||||||||||| |||| |||||||||| |||||||| | ||||| || ||||||||||| |     
T  16732074 gagatgatagagcttgcactagagtagacgagtcggactcgaagacaactcggttccatctgttcgcatcagcagagtgaatggcctcgagtaaggctac 16731975  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    ||||||||||||||| ||||||||||||  ||  | |||||| ||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||    
T  16731974 tgcctccccctccaatactgtcatatttgccctctgccatttcgtttgagcccgaataaattgcccgcgggaatctctaacacaacatgcaaaagatgta 16731875  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    | |||||| |||||| ||||| || ||||||||||||||    
T  16731874 atatggttgcggtcatggaacacggcatccacattgcac 16731836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 17710208 - 17709970
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    |||| |||||||||||||||| |||||  || || |||||||||||||| |||| |||||||||| |||||||| | ||||| || ||||||||||| |     
T  17710208 gagatgatagagcttgcactagagtagacgagtcggactcgaagacaactcggttccatctgttcgcatcagcagagtgaatggcctcgagtaaggctac 17710109  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    ||||||||||||||| ||||||||||||  ||  | |||||| ||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||    
T  17710108 tgcctccccctccaatactgtcatatttgccctctgccatttcgtttgagcccgaataaattgcccgcgggaatctctaacacaacatgcaaaagatgta 17710009  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    | |||||| |||||| ||||| || ||||||||||||||    
T  17710008 atatggttgcggtcatggaacacggcatccacattgcac 17709970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 16098631 - 16098393
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    |||||||| ||||||| |||| |||||  || || |||||||||||||||||||||||| ||||  |||||||||||||||  || || |||||||| |     
T  16098631 gagacgatggagcttgtactagagtagatgagtcggactcgaagacaacccggtcccatttgttagcatcagcaaattgaagggcctctagtaaggctac 16098532  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    | |||| |||||||||| |||||||||| | ||||||||||| ||||||||| ||||||||||||   ||||||||||||| ||||| |||||||| |||    
T  16098531 tacctctccctccaaaattgtcatatttgttcgtttccatttcgtttgagcccgaataaattgcctatgggagtctctaacacaacacgcaaaagaagta 16098432  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    | ||||||||||||| ||||||   | ||||||||||||    
T  16098431 atatggttacggtcatggaacgatgcgtccacattgcac 16098393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 22289382 - 22289144
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    |||||||||| |||||||||| |||||| || || |||||||||||| ||||||||||| ||||| || | ||||| ||||| |||||||||||||| |     
T  22289382 gagacgatagcgcttgcactagagtagctgagtcggactcgaagacagcccggtcccatttgttcccaacggcaaagtgaatggcatcgagtaaggcaac 22289283  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
      ||||||||||||||||||||||||||   |||| |||||| || |||| | |||| |||||||| ||||| |||||||| ||||| || |||||||||    
T  22289282 cacctccccctccaaaactgtcatatttgctcgttgccatttcgtctgagtccgaatgaattgcccacgggaatctctaacacaacacgcgaaagatgta 22289183  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    | ||| | ||||||| | |||||| ||||||||||||||    
T  22289182 atatgttgacggtcatgaaacgcggcatccacattgcac 22289144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 30493657 - 30493893
Alignment:
Q  14 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 113  Q
    |||||||||||||||||||| ||||   || || ||||||||||||||| |||| |||||||||| |||||| || ||||   |||| |||||||| | |    
T  30493657 agacgatagagcttgcactagagtaattgagtcggactcgaagacaacctggtctcatctgttcatatcagctaagtgaacgacatcaagtaaggctact 30493756  T
Q  114 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 213  Q
    |||||||| ||||||||||||||| || || | | |||||| |||||||||||| ||||||||||  | || | |||||| ||||| |||||| ||||||    
T  30493757 gcctcccc-tccaaaactgtcatacttgtctgctgccatttcgtttgagcctgagtaaattgcccatgagaatttctaacacaacacgcaaaatatgtaa 30493855  T
Q  214 gatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    | ||||||| |||| |||| |||||||||| |||||||    
T  30493856 gttggttacagtcatggaatgcgacatccatattgcac 30493893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 29200999 - 29201208
Alignment:
Q  11 cagagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcg 110  Q
    ||||||||||||||||||||||| |||||| || |||||||||||||||||||| | ||||||||||||||||||||| |||||  |||| |||||        
T  29200999 cagagacgatagagcttgcactagagtagctgagtcagactcgaagacaacccgtttccatctgttcacatcagcaaagtgaatgacatcaagtaaacat 29201098  T
Q  111 attgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattg--cccccgggagtctctaacccaacatgcaaaaga 208  Q
      | |||||||||||||||||||||||||| |||| |  ||||| ||||||||| ||||||| ||  | | |  ||||||||||  ||||||||||||||    
T  29201099 gctacctccccctccaaaactgtcatatttgtccgctgtcatttcgtttgagcccgaataaactggccacacatgagtctctaatacaacatgcaaaaga 29201198  T
Q  209 tgtaagatgg 218  Q
    | ||| ||||    
T  29201199 tataatatgg 29201208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 45 - 250
Target Start/End: Complemental strand, 17877517 - 17877312
Alignment:
Q  45 tcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttcc 144  Q
    |||||||||||||||||||| | |||||||||| |||  | ||| ||||  || | ||||||||| | | ||||||||||||| ||||||||||||  ||    
T  17877517 tcagactcgaagacaacccgattccatctgttcgcatttgtaaagtgaagggccttgagtaaggctacttcctccccctccaatactgtcatatttcccc 17877418  T
Q  145 gtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatccac 244  Q
    | | | |||| ||||||||  |||| || | |||  |||||||| |||| | ||| |||| | |||||| ||||||||  ||| ||||||||||||||||    
T  17877417 gctgcgatttcgtttgagcacgaatgaacttcccatgggagtctataacgccacacgcaacaaatgtaatatggttacaatcatggaacgcgacatccac 17877318  T
Q  245 attgca 250  Q
    ||||||    
T  17877317 attgca 17877312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 59 - 251
Target Start/End: Complemental strand, 1581711 - 1581518
Alignment:
Q  59 aacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccc-tccaaaactgtcatatttttccgtttccattttgt 157  Q
    |||||| || ||||||||| |||||||||| ||||  || ||||||||||| | ||| |||||| || |||||| | ||||||  ||  | |||||| ||    
T  1581711 aacccgatctcatctgttcgcatcagcaaagtgaagggcctcgagtaaggctactgcatcccccctcaaaaactataatatttgccctctgccatttcgt 1581612  T
Q  158 ttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    ||||||| | ||||| |  || | |||||||||| | ||||| ||||||||||||| ||||||| ||||| |||||||  ||||||||||||||    
T  1581611 ttgagcccggataaactatccgctggagtctctagcacaacacgcaaaagatgtaatatggttatggtcatggaacgcagcatccacattgcac 1581518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 49 - 213
Target Start/End: Original strand, 30824557 - 30824720
Alignment:
Q  49 actcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttccg-tt 147  Q
    |||||||||||||| | |||||||||||| ||| || ||| ||||  || ||||||||||| | |||||  |||| |||||||||||||||| |||| |     
T  30824557 actcgaagacaacctgatcccatctgttcgcattagaaaagtgaagggcctcgagtaaggctactgcct--cccttcaaaactgtcatatttatccgctg 30824654  T
Q  148 tccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 213  Q
    ||  |||| ||| |||| |||||||||   | ||| |||||||||| |||||||||||||||||||    
T  30824655 tctttttttttttagcccgaataaattattcgcggcagtctctaacacaacatgcaaaagatgtaa 30824720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 3275176 - 3275082
Alignment:
Q  12 agagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaa 106  Q
    ||||| ||||| |||||||||| |||||| || || |||||||||||||||| |||| || ||||| || ||||||| |||||||||| ||||||    
T  3275176 agagatgatagcgcttgcactagagtagctgagtcggactcgaagacaacccagtcctatatgttcccaacagcaaagtgaatagcattgagtaa 3275082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 34578437 - 34578538
Alignment:
Q  126 aaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggt 225  Q
    |||||||||||||||   ||||  ||||| || |||||| ||||||||||||| ||||| | || ||| ||||| ||||||||||||| ||| | |||||    
T  34578437 aaaactgtcatatttgctcgttgtcatttcgtctgagcccgaataaattgcccacgggaatttcgaacacaacacgcaaaagatgtaatatgttaacggt 34578536  T
Q  226 ca 227  Q
    ||    
T  34578537 ca 34578538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 420 - 477
Target Start/End: Complemental strand, 20878316 - 20878260
Alignment:
Q  420 ttcaattatttttaaatgaaaaaatgtcaagattataacgggacctctgaattgtcgg 477  Q
    ||||||||||||||||| |||||||||  ||||||||||| | |||| ||||||||||    
T  20878316 ttcaattatttttaaat-aaaaaatgtagagattataacgtggcctccgaattgtcgg 20878260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 420 - 477
Target Start/End: Original strand, 28031464 - 28031520
Alignment:
Q  420 ttcaattatttttaaatgaaaaaatgtcaagattataacgggacctctgaattgtcgg 477  Q
    |||||||||||||||||| |||| |||||||||||||||| | |||| ||||| ||||    
T  28031464 ttcaattatttttaaatg-aaaattgtcaagattataacgaggcctccgaattatcgg 28031520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 402
Target Start/End: Complemental strand, 31446990 - 31446949
Alignment:
Q  361 atatatttaactacaactcagttgtctgtaactataagtggt 402  Q
    |||||||||||||||||| |||||| ||| ||||||||||||    
T  31446990 atatatttaactacaacttagttgtttgtcactataagtggt 31446949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 7e-70; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 7127364 - 7127130
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    ||||||| ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |     
T  7127364 gagacgaaagagcttgcactaaagtagcatagtcagactcgaaggcaacccggtcccatctgttcacatcagcaaagtgaatagcatcgagtaaggctac 7127265  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    | ||||||||||||||||| ||||||||  ||||||||||||  |||| ||  ||||||||| |||||| ||||||||||| ||||||||| | ||||||    
T  7127264 tacctccccctccaaaactttcatatttgcccgtttccatttcatttgtgcacgaataaatttcccccgagagtctctaacacaacatgcagaggatgta 7127165  T
Q  213 agatggttacggtcaaggaacgcgacatccacatt 247  Q
    ||| ||||||| ||| |||||||| ||||||||||    
T  7127164 agacggttacgttcatggaacgcggcatccacatt 7127130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 8451169 - 8451403
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    ||||||||| |||||||||||||||||  || |||||||||||||||||||||||||||| |||||||||||| || ||||| | ||||||||| || |     
T  8451169 gagacgataaagcttgcactaaagtagatgagtcagactcgaagacaacccggtcccatccgttcacatcagcgaagtgaatggaatcgagtaaagctac 8451268  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    ||||||||||||||| ||||||||||||  ||| |||| ||||||||||||| |||||||||| || |  ||||||||||| |||||| |||||||||||    
T  8451269 tgcctccccctccaacactgtcatatttgcccgcttcctttttgtttgagcccgaataaattgtccacaagagtctctaacacaacatccaaaagatgta 8451368  T
Q  213 agatggttacggtcaaggaacgcgacatccacatt 247  Q
    | ||||||||||||| |||||||| ||||||||||    
T  8451369 aaatggttacggtcatggaacgcggcatccacatt 8451403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 478102 - 478336
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    ||||||||||||||||||||| ||||| ||| ||||| ||||||| ||||||||||||||| ||||||| |||||| ||||| |||||||||||||| |     
T  478102 gagacgatagagcttgcactagagtagtagagtcagattcgaagataacccggtcccatctattcacattagcaaagtgaatggcatcgagtaaggctac 478201  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    ||||||||||||||||||||||||||||  ||||| |||||||||||||||| | |||||||| ||  || | |||||||| |||||  ||||||||||     
T  478202 tgcctccccctccaaaactgtcatatttgcccgttgccattttgtttgagcccggataaattgaccatggaaatctctaacacaacacacaaaagatgtt 478301  T
Q  213 agatggttacggtcaaggaacgcgacatccacatt 247  Q
    ||||||||  ||||| ||||||   ||||||||||    
T  478302 agatggttgtggtcatggaacgttgcatccacatt 478336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 23854073 - 23853835
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    ||||||||||||||||||||| ||| |  || || |||||||||||||| | ||| ||||||||  ||||| |||| ||||| || || |||||||| |     
T  23854073 gagacgatagagcttgcactagagttgatgagtcggactcgaagacaactcagtctcatctgttagcatcaacaaagtgaatggcctcaagtaaggctac 23853974  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    |||||| |||||||||||||||||||||||||| |  ||||| |||||| || ||||||||||||| ||||||||||||||  |||| ||||||||||||    
T  23853973 tgcctcaccctccaaaactgtcatatttttccgctgtcatttcgtttgaacccgaataaattgcccacgggagtctctaacataacacgcaaaagatgta 23853874  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    | || |||||||||| |||||||| | ||||||| ||||    
T  23853873 atatagttacggtcatggaacgcggcgtccacatcgcac 23853835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 185637 - 185842
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    ||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |||||| ||||||||| |||| ||||||| |||||||||||| |     
T  185637 gagacgaaagagcttgcactaaagtagcagagtcagactcgtagacaacccggttccatctattcacatcaacaaagtgaatagtatcgagtaaggctac 185736  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    | ||| ||||||||||||||||||||||  |||||||||||| |||||||||   ||||||| ||| | ||||||||| || |||| |||| ||||||||    
T  185737 ttcct-cccctccaaaactgtcatatttgcccgtttccatttcgtttgagcccagataaatttccctc-ggagtctcttacacaacgtgcagaagatgta 185834  T
Q  213 agatggtt 220  Q
    ||| ||||    
T  185835 agacggtt 185842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 13415162 - 13414926
Alignment:
Q  15 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 114  Q
    ||||||| | ||||||||| ||||| |||||| ||||| |||||||| || |||||||||||  |||| |||||  |||  || ||||||||||| | ||    
T  13415162 gacgatataccttgcactagagtagaagaatcggactcaaagacaactcgatcccatctgtttgcatccgcaaaaggaagggcctcgagtaaggctactg 13415063  T
Q  115 cctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaag 214  Q
    |||||||||||||||||||||||||| |||| | |||||| ||||||||| ||||||||||||| ||  |||||||||   ||||  |||||| |||||     
T  13415062 cctccccctccaaaactgtcatatttgtccgctgccatttcgtttgagcccgaataaattgcccgcgaaagtctctaaaaaaacacacaaaagttgtaat 13414963  T
Q  215 atggttacggtcaaggaacgcgacatccacattgcac 251  Q
    ||||||||| ||| ||||| |||||||||||||||||    
T  13414962 atggttacgttcatggaacacgacatccacattgcac 13414926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 40588778 - 40588940
Alignment:
Q  15 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 114  Q
    |||||||||| || ||||| |||||  ||||||||||| |||||||||||||| ||||||||  |||| |||||  |||  || ||||||| ||| | ||    
T  40588778 gacgatagagtttacactagagtagatgaatcagactcaaagacaacccggtctcatctgtttgcatccgcaaaacgaagggcctcgagtacggctactg 40588877  T
Q  115 cctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcc 177  Q
    ||||||||||||||||||| ||||||  ||| | |||||| ||||||||| ||||||||||||    
T  40588878 cctccccctccaaaactgttatatttgcccgctgccatttcgtttgagcccgaataaattgcc 40588940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 37712214 - 37711990
Alignment:
Q  14 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 113  Q
    |||| ||||||||| ||||| ||||||||  ||| ||| ||||| |||| | || ||||||||||||||| |||| ||||| ||||    ||| || | |    
T  37712214 agacaatagagcttacactagagtagcagggtcaaactagaagataacctgatctcatctgttcacatcaacaaagtgaatggcat----taaagctact 37712119  T
Q  114 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 213  Q
     ||||||| || |||||||||||||||| ||| |  ||||| |||| |||   |||||||||||| |  |||| |||||| ||||| |||||| ||||||    
T  37712118 acctccccttc-aaaactgtcatattttcccgctgtcatttcgttttagctcaaataaattgcccacacgagtttctaacacaacacgcaaaaaatgtaa 37712020  T
Q  214 gatggttacggtcaaggaacgcgacatcca 243  Q
    |||  |||| |||| || |||| |||||||    
T  37712019 gataattacagtcatggtacgcaacatcca 37711990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 139
Target Start/End: Complemental strand, 9496887 - 9496797
Alignment:
Q  48 gactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatt 139  Q
    ||||| |||||||| |||||||||  |||||||||| |||| |||||  |||| |||||||| | |||||| ||||||||||||||||||||    
T  9496887 gactcaaagacaacacggtcccata-gttcacatcaacaaagtgaatgtcatcaagtaaggctactgcctcaccctccaaaactgtcatatt 9496797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 460
Target Start/End: Original strand, 7888558 - 7888598
Alignment:
Q  420 ttcaattatttttaaatgaaaaaatgtcaagattataacgg 460  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  7888558 ttcaattatttttaaaggaaaaattgtcaagattataacgg 7888598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 598284 - 598337
Alignment:
Q  14 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtc 67  Q
    |||||||||||||||||||| ||||||  | || |||| |||||||||||||||    
T  598284 agacgatagagcttgcactagagtagctaagtccgacttgaagacaacccggtc 598337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 3606785 - 3606874
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcga 102  Q
    |||||||||||| ||| |||||||| |  || || |||| ||| |||||  ||| ||||||||||||||||  ||||||||| |||||||    
T  3606785 gagacgatagagtttgtactaaagttgttgagtcggacttgaaaacaacttggttccatctgttcacatcaagaaattgaatggcatcga 3606874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 4e-65; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 25682792 - 25682554
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    |||||||||||||||| |||| |||||| || ||| ||||||||||| ||||||||||||||||||||| |||||| |||||  ||||||||||||| |     
T  25682792 gagacgatagagcttgtactagagtagctgagtcaaactcgaagacagcccggtcccatctgttcacattagcaaagtgaatgacatcgagtaaggctac 25682693  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    ||||||||||||||| ||||||||||||  ||||| |||||| |||||||||   ||||||||||| |||||||||||||| ||||| ||||||||||||    
T  25682692 tgcctccccctccaacactgtcatatttgcccgttgccatttcgtttgagcccagataaattgcccacgggagtctctaacacaacacgcaaaagatgta 25682593  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    ||||||||||| ||| | ||| || ||||||||||||||    
T  25682592 agatggttacgttcatgaaacacggcatccacattgcac 25682554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 44527394 - 44527156
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    |||| |||||||||||||| | |||||  || || |||||||||||||||||||||||||||||  |||||||||| ||||  || || |||||||| |     
T  44527394 gagatgatagagcttgcacaagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcagcaaagtgaagggcctctagtaaggctac 44527295  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    |||||||||||||||||||||||||||| |||| | |||||||||||||||| ||||||||||||| |  ||||||||||| ||||| ||||||||||||    
T  44527294 tgcctccccctccaaaactgtcatatttgtccgctgccattttgtttgagcccgaataaattgcccacaagagtctctaacacaacacgcaaaagatgta 44527195  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    | |||||||| |||| |||||||| | ||||||||||||    
T  44527194 atatggttacagtcatggaacgcggcgtccacattgcac 44527156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 36733837 - 36733604
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    ||||||||| ||||||||||| |||   ||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||| | |     
T  36733837 gagacgatatagcttgcactagagttatagagtcagactcgaagacaacccggtcccatttgttcacatcagcaaagtgaataacattgagtaagactac 36733738  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    |||||||||||||||||||| |||||||  |||||  ||||||||||||||| |||||||||| || || ||||||||||| |||||  |||||| ||||    
T  36733737 tgcctccccctccaaaactgccatatttacccgttgtcattttgtttgagcccgaataaattgtccacgagagtctctaacacaacacacaaaaggtgta 36733638  T
Q  213 agatggttacggtcaaggaacgcgacatccacat 246  Q
    |||||||||  |||| | |||||| |||||||||    
T  36733637 agatggttatagtcatgaaacgcggcatccacat 36733604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 48166377 - 48166157
Alignment:
Q  14 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 113  Q
    |||| |||||||||||| || |||||| ||||||||||||||||||||||| |||||| | ||||||| |||||| |||||  ||||||||||||| |||    
T  48166377 agactatagagcttgcaatagagtagctgaatcagactcgaagacaacccgatcccatatattcacataagcaaagtgaatgacatcgagtaaggctatt 48166278  T
Q  114 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 213  Q
    | ||||| |||||||||||||||||||   || | ||||||  |||||||| |||||||||| || |||||||||||||| |||||  ||||||||||||    
T  48166277 gtctcccactccaaaactgtcatatttgctcgctgccatttcatttgagcccgaataaattgaccacgggagtctctaacacaacacacaaaagatgtaa 48166178  T
Q  214 gatggttacggtcaaggaacg 234  Q
    |||||||||||||| ||||||    
T  48166177 gatggttacggtcatggaacg 48166157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 48949770 - 48950008
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    |||||||||| |||||||||| |||||| || |   ||||||||||||||||||||||||||||| || || |||| ||||| |||||||||||||| |     
T  48949770 gagacgatagcgcttgcactagagtagctgagttgaactcgaagacaacccggtcccatctgttcccaacaacaaagtgaatcgcatcgagtaaggcaac 48949869  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    ||||||||||||||||||| ||||||||   |||| |||||| ||||||||| |||| |||||||  |||||||||||||| ||||| || |||||||||    
T  48949870 tgcctccccctccaaaactttcatatttgctcgttgccatttcgtttgagcccgaatgaattgccaacgggagtctctaacacaacacgcgaaagatgta 48949969  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    | ||| | ||||||| | |||||| ||||||||||||||    
T  48949970 atatgttgacggtcatgaaacgcggcatccacattgcac 48950008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 51113458 - 51113218
Alignment:
Q  11 cagagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcg 110  Q
    |||||||||||| |||||||||| |||||| || || |||||||||||||||||||||||||||||| || || |||| |||||  |||||||||||||     
T  51113458 cagagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatctgttcccaacaacaaagtgaatgacatcgagtaaggca 51113359  T
Q  111 attgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatg 210  Q
    | |||||||||||||||||| || ||||||   |||| |||||| ||||||| | |||| |||||||| |||||||||||||| ||||| || |||||||    
T  51113358 actgcctccccctccaaaacggttatatttgctcgttgccatttcgtttgagtccgaatgaattgcccacgggagtctctaacacaacacgcgaaagatg 51113259  T
Q  211 taagatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    ||| ||| | ||||||| | ||| || ||||||||||||||    
T  51113258 taatatgttgacggtcatgaaacacggcatccacattgcac 51113218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 4395299 - 4395062
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    ||||||||||||||||||||| |||||  || |  |||||||||| |||| |||||||||| ||| |||||||||| ||||  || ||||||||||| |     
T  4395299 gagacgatagagcttgcactagagtagatgagttggactcgaagataacctggtcccatctattcgcatcagcaaagtgaagggcctcgagtaaggctag 4395200  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    ||||||||| || |||||| ||||||||  ||| | |||||| | ||||||| | ||||||||||| || ||||||||||| || |||||||||| |||     
T  4395199 tgcctccccttc-aaaactctcatatttgcccgctgccatttcgattgagcccggataaattgcccacgagagtctctaacacagcatgcaaaagttgtg 4395101  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    | ||||||||||||| |||||||| | ||||||||||||    
T  4395100 atatggttacggtcatggaacgcggcttccacattgcac 4395062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 52109594 - 52109361
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    ||||| |||||||||| |||| |||||  |||||| |||| ||||||||||  |||||||||||  |||||||||| ||||   | ||||||||||| |     
T  52109594 gagacaatagagcttgtactagagtagatgaatcacactcaaagacaaccca-tcccatctgttagcatcagcaaagtgaaggacctcgagtaaggctac 52109496  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    ||| |||||||||||||   ||||||||  ||| | |||||| |||||||||||||||||||| || | |||||||||||| ||||||||||||||| ||    
T  52109495 tgcatccccctccaaaatgatcatatttgcccgctgccatttcgtttgagcctgaataaattgtccacaggagtctctaacacaacatgcaaaagatata 52109396  T
Q  213 agatggttacggtcaaggaacgcgacatccacatt 247  Q
    ||||| ||||||||| ||||| | || ||||||||    
T  52109395 agatgattacggtcatggaacacaacgtccacatt 52109361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 5609480 - 5609242
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    |||||||||||| |||||||| |||||  || ||  |||||||||||||||| || ||||||||| || || |||| ||||   | ||||||||||| |     
T  5609480 gagacgatagagtttgcactagagtagatgagtcgaactcgaagacaacccgatctcatctgttcgcaacatcaaagtgaaggacctcgagtaaggctac 5609381  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    ||||||||||| ||||||| |||||||| |||| |  |||   ||||||||| ||||||||||| |  | ||||||||| | || || || |||| ||||    
T  5609380 tgcctcccccttcaaaactatcatatttgtccgctgtcatagagtttgagcccgaataaattgctcgtgtgagtctctagcacagcacgcgaaagttgta 5609281  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    | |||||||| |||| |||||||||||||||||||||||    
T  5609280 atatggttacagtcatggaacgcgacatccacattgcac 5609242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 16816846 - 16817083
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    |||||| |||| |||| |||| |||||  || || |||||||||||||||||||||||||||||  |||||||||| ||||  || ||||||||||| |     
T  16816846 gagacggtagaacttgaactagagtagacgagtcggactcgaagacaacccggtcccatctgtttgcatcagcaaaatgaagggcctcgagtaaggctac 16816945  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    ||||| ||||||||||| ||||||||||  ||  | |||||||| ||||||  ||||||||||| | || ||||||||||  ||| |  |||||||||||    
T  16816946 tgcct-cccctccaaaattgtcatatttgcccactgccattttgattgagctcgaataaattgcacgcgagagtctctaaaacaatacacaaaagatgta 16817044  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    | |||||||| | || |||||||| | ||| ||||||||    
T  16817045 atatggttacagacatggaacgcggcgtccgcattgcac 16817083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 44602893 - 44602766
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    |||| |||||||||||||||| |||||| || | |||||||||| |||||||||| |||||||||||||||| ||| |||||  ||||||||||| | |     
T  44602893 gagatgatagagcttgcactagagtagcggagttagactcgaaggcaacccggtctcatctgttcacatcagtaaagtgaatgacatcgagtaagactaa 44602794  T
Q  113 tgcctccccctccaaaactgtcatattt 140  Q
    || |||||||||||||| ||||||||||    
T  44602793 tgtctccccctccaaaattgtcatattt 44602766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 120 - 250
Target Start/End: Complemental strand, 24538544 - 24538414
Alignment:
Q  120 ccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggt 219  Q
    ||||||||||||||| |||||  | | | ||| || ||||||||| |||||||||  || |||||||||||||| |||||  |||||||| |||  ||||    
T  24538544 ccctccaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattatccacgggagtctctaacacaacacacaaaagatctaacttggt 24538445  T
Q  220 tacggtcaaggaacgcgacatccacattgca 250  Q
    |||||| |  ||||||| |||||||||||||    
T  24538444 tacggttatagaacgcggcatccacattgca 24538414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 251 - 401
Target Start/End: Original strand, 22572109 - 22572257
Alignment:
Q  251 catttttctgtaggt--aagtccgaaagacaacaattttgctgtcaatt-tgcattatccataggtaaatgcctatttttctatggttgaaactcttatt 347  Q
    |||||||||||||||  |||||  ||||||| ||||||| |||| |||| ||||||||||||||||||||||   ||| ||| | | | ||| || ||||    
T  22572109 catttttctgtaggttaaagtctaaaagacatcaattttactgttaattatgcattatccataggtaaatgc---tttgtctgtcggtaaaaatcatatt 22572205  T
Q  348 taaacgattacttatatatttaactacaactcagttgtctgtaactataagtgg 401  Q
    ||||| |||||    |||||||||||||||| |||| ||| |||||||||||||    
T  22572206 taaaccattac--ccatatttaactacaacttagttttctataactataagtgg 22572257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 2885363 - 2885313
Alignment:
Q  14 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccg 64  Q
    |||||||||||||||||||| |||||| || || |||||||||||||||||    
T  2885363 agacgatagagcttgcactagagtagctgagtctgactcgaagacaacccg 2885313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 420 - 478
Target Start/End: Original strand, 8904841 - 8904899
Alignment:
Q  420 ttcaattatttttaaatgaaaaaatgtcaagattataacgggacctctgaattgtcggg 478  Q
    ||||||||||||||||||||||| |||||||||| ||| | | |||| |||||||||||    
T  8904841 ttcaattatttttaaatgaaaaattgtcaagattgtaaagagtcctccgaattgtcggg 8904899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 8904759 - 8904812
Alignment:
Q  273 aaagacaacaattttgctgtcaatt-tgcattatccataggtaaatgcctattt 325  Q
    ||||||| ||||||| | ||||||| ||||||||||||||||||||| ||||||    
T  8904759 aaagacatcaattttaccgtcaattatgcattatccataggtaaatgtctattt 8904812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 420 - 485
Target Start/End: Original strand, 14615076 - 14615140
Alignment:
Q  420 ttcaattatttttaaatgaaaaaatgtcaagattataacgggacctctgaattgtcgggaatgacc 485  Q
    ||||||| ||||||||||||||  |||||| |||| ||| |||||||| |||||||||||| ||||    
T  14615076 ttcaattctttttaaatgaaaat-tgtcaaaattacaactggacctctaaattgtcgggaacgacc 14615140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 1e-62; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 88700 - 88462
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    ||||||||||||||||||||| |||||  || || |||||||||||||||||||||||||||||  ||||| |||| ||||  || ||||||||||| |     
T  88700 gagacgatagagcttgcactagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcaacaaagtgaagggcctcgagtaaggctac 88601  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    ||||||||||||||||||||||||||||  || || ||||||  |||||||| ||||||||||||| || ||||||||||| ||||||||||||| ||||    
T  88600 tgcctccccctccaaaactgtcatatttgcccattgccatttcatttgagcccgaataaattgcccgcgagagtctctaacacaacatgcaaaagttgta 88501  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    | ||||||||||||| |||||||  ||||||||||||||    
T  88500 atatggttacggtcatggaacgcagcatccacattgcac 88462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 44017364 - 44017570
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    |||||||||||||||||||||||||| | || |||||||||||||||||  |||| ||| ||||||||| |||||  ||||| |||||||||||||   |    
T  44017364 gagacgatagagcttgcactaaagtaacggagtcagactcgaagacaacttggtctcatatgttcacattagcaacgtgaatggcatcgagtaaggttgt 44017463  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    || |||||||||||||||||||||||||   || |  |||||| |||||||| ||||||||||||| |||||||||||||| ||||| || |||||||||    
T  44017464 tgtctccccctccaaaactgtcatatttgcacggtgtcattttatttgagcccgaataaattgcccacgggagtctctaacacaacacgcgaaagatgta 44017563  T
Q  213 agatggt 219  Q
    |||||||    
T  44017564 agatggt 44017570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 34695950 - 34696167
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    |||||||||  |||||||||| |||||| || || ||||||||||||||||| |||||||| || ||||||||||| ||||| || | ||||||||| |     
T  34695950 gagacgataacgcttgcactagagtagcggagtcggactcgaagacaacccgttcccatctattgacatcagcaaagtgaatggccttgagtaaggctac 34696049  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    ||||||||||||||||||||||||||||  ||| | |||  | | ||||||| ||||||||||||| |||||||||||||| ||||| ||||||||||||    
T  34696050 tgcctccccctccaaaactgtcatatttgcccgctgcca--tcgattgagcccgaataaattgcccacgggagtctctaacgcaacacgcaaaagatgta 34696147  T
Q  213 agatggttacggtcaaggaa 232  Q
    | ||| ||| ||||| ||||    
T  34696148 atatgcttatggtcatggaa 34696167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 34718362 - 34718579
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    |||||||||  |||||||||| |||||| || || ||||||||||||||||| |||||||| || ||||||||||| ||||| || | ||||||||| |     
T  34718362 gagacgataacgcttgcactagagtagcggagtcggactcgaagacaacccgttcccatctattgacatcagcaaagtgaatggccttgagtaaggctac 34718461  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    ||||||||||||||||||||||||||||  ||| | |||  | | ||||||| ||||||||||||| |||||||||||||| ||||| ||||||||||||    
T  34718462 tgcctccccctccaaaactgtcatatttgcccgctgcca--tcgattgagcccgaataaattgcccacgggagtctctaacgcaacacgcaaaagatgta 34718559  T
Q  213 agatggttacggtcaaggaa 232  Q
    | ||| ||| ||||| ||||    
T  34718560 atatgcttatggtcatggaa 34718579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 12130689 - 12130922
Alignment:
Q  18 gatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcct 117  Q
    ||||||||||| |||| |||||  || ||||||||||||| |||||| | |||||| ||  |||||||||| |||| ||| || |||||||| | |||||    
T  12130689 gatagagcttggactagagtagatgagtcagactcgaagataacccgattccatctatttgcatcagcaaagtgaagagcctcaagtaaggctactgcct 12130788  T
Q  118 ccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatg 217  Q
    |||||||||| ||| ||||||||   || |  ||||| ||||||||| |||||| |||||| |||||||||||||| |||||  ||||||||  || |||    
T  12130789 ccccctccaacactatcatatttgctcgctgtcatttcgtttgagcccgaataatttgcccgcgggagtctctaacacaacacccaaaagatagaatatg 12130888  T
Q  218 gttacggtcaaggaacgcgacatccacattgcac 251  Q
    |||||||||| |||||| | ||||||||||||||    
T  12130889 gttacggtcatggaacggggcatccacattgcac 12130922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 51 - 251
Target Start/End: Original strand, 18345571 - 18345770
Alignment:
Q  51 tcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttccgtttcc 150  Q
    ||||||||||  || |||||||||||  |||||||||| ||||  || ||||||||||| | |||||||||||| ||||||||||||||| |||||| ||    
T  18345571 tcgaagacaattcgatcccatctgttagcatcagcaaagtgaagggcctcgagtaaggctactgcctccccctc-aaaactgtcatatttgtccgttacc 18345669  T
Q  151 attttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatccacattgca 250  Q
    |||| |||||||    |||||||| ||| ||| |||||||||| ||||| |||||||| |||| ||||||||| ||| ||||||   | |||||||||||    
T  18345670 atttcgtttgagttcaaataaattacccacggaagtctctaacacaacacgcaaaagaagtaatatggttacgctcatggaacgttgcgtccacattgca 18345769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 70 - 173
Target Start/End: Complemental strand, 9710013 - 9709910
Alignment:
Q  70 atctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaat 169  Q
    |||||||| || | ||||| ||||| |||||||||||||| | |||||||||||||||||||||||||||| | |||| |||||| ||||||||||||||    
T  9710013 atctgttcccaaccgcaaagtgaatggcatcgagtaaggcaactgcctccccctccaaaactgtcatatttgttcgttgccatttcgtttgagcctgaat 9709914  T
Q  170 aaat 173  Q
    ||||    
T  9709913 aaat 9709910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 26198824 - 26198637
Alignment:
Q  12 agagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcga 111  Q
    |||||||||||||||||||||| |||||| || || |||||||||||  |||||        |||||||| |||||| | ||| ||||| || ||||| |    
T  26198824 agagacgatagagcttgcactagagtagctgagtcggactcgaagac--cccgg--------gttcacattagcaaagtaaatggcatcaag-aaggcta 26198736  T
Q  112 ttgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatg 210  Q
     ||| |||||||||||||||||||||||| | || | ||||||| |||||||  ||||||||||||| |  ||||||||||| || ||  |||||||||    
T  26198735 ctgcatccccctccaaaactgtcatatttgttcgctaccattttatttgagctcgaataaattgcccacatgagtctctaacacagcacacaaaagatg 26198637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 1418025 - 1418154
Alignment:
Q  11 cagagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcg 110  Q
    ||||||| |||||||||| |||| |||||  || ||||||||||||||||||| ||||||||||||  |||||||||||  |||  | |||||||||||     
T  1418025 cagagacaatagagcttgaactagagtagatgagtcagactcgaagacaacccagtcccatctgtttgcatcagcaaatcaaattacctcgagtaaggct 1418124  T
Q  111 attgcctccccctccaaaactgtcatattt 140  Q
    | || ||| |||| || ||| |||||||||    
T  1418125 actgtctctcccttcataaccgtcatattt 1418154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 22845677 - 22845602
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaa 88  Q
    ||||||||||||||||||||| |||||   | |  |||||||||||||||||||||||||||||| ||||||||||    
T  22845677 gagacgatagagcttgcactagagtagattagttggactcgaagacaacccggtcccatctgttcgcatcagcaaa 22845602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 9710094 - 9710036
Alignment:
Q  15 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatct 73  Q
    ||||||||||||||||||| |||| || | |||||||||||||||||||||||||||||    
T  9710094 gacgatagagcttgcactagagtatcaaagtcagactcgaagacaacccggtcccatct 9710036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 13109916 - 13109987
Alignment:
Q  14 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagc 85  Q
    |||||||||||||| ||||| ||||| ||| || |||||||||||||||  |||||||||| || |||||||    
T  13109916 agacgatagagcttccactagagtagaagagtcggactcgaagacaaccatgtcccatctgatcgcatcagc 13109987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 14827218 - 14827126
Alignment:
Q  16 acgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaagg 108  Q
    |||||||||||||||||| ||||||  | ||||| || |||||||| || || ||||| |||| ||||| ||| |||||  ||||||||||||    
T  14827218 acgatagagcttgcactagagtagctaagtcagattcaaagacaactcgatctcatctattcatatcagtaaagtgaatgacatcgagtaagg 14827126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 344 - 403
Target Start/End: Complemental strand, 6298985 - 6298926
Alignment:
Q  344 tatttaaacgattacttatatatttaactacaactcagttgtctgtaactataagtggtg 403  Q
    ||||||||| |||||| ||||||||||||| || | |||||||| | |||||||||||||    
T  6298985 tatttaaaccattactcatatatttaactataatttagttgtctcttactataagtggtg 6298926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 11673525 - 11673478
Alignment:
Q  272 gaaagacaacaattttgctgtcaatt-tgcattatccataggtaaatg 318  Q
    |||||||| ||||||||||||||||| ||||||||||||| |||||||    
T  11673525 gaaagacatcaattttgctgtcaattatgcattatccataagtaaatg 11673478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 6e-61; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 15606039 - 15606278
Alignment:
Q  12 agagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcga 111  Q
    |||||||||||||||||||||| |||||| || || |||| ||||||||||||||||||| ||||| ||||| |||| ||||| |||||||||||||| |    
T  15606039 agagacgatagagcttgcactagagtagctgagtcggacttgaagacaacccggtcccatttgttcccatcaacaaagtgaatggcatcgagtaaggcta 15606138  T
Q  112 ttgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgt 211  Q
     |||||||||||||||||||||||| |||| ||| | |||||||||||||||| |||||| ||||||  ||||||||||||| ||||| | |||||||||    
T  15606139 ctgcctccccctccaaaactgtcatgttttcccgctgccattttgtttgagcccgaataagttgcccatgggagtctctaacacaacacgaaaaagatgt 15606238  T
Q  212 aagatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    || ||||||||| ||  | || ||| ||||||||||||||    
T  15606239 aatatggttacgatcgtgaaatgcggcatccacattgcac 15606278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 28107280 - 28107059
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    ||||||||||||||||||||| |||||| || | |||||||||||||||  | |||||||| |||| ||  ||||| ||||| ||||| |||||||| |     
T  28107280 gagacgatagagcttgcactagagtagcggagttagactcgaagacaacgtgatcccatctattcatatttgcaaagtgaatggcatcaagtaaggctac 28107181  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    |||||||||||||||||||||||||| | |||| | |||||| |||||||||||||||||||| || |||||||||||||| |||||  | |||||||||    
T  28107180 tgcctccccctccaaaactgtcatatctgtccgctgccatttcgtttgagcctgaataaattgtccacgggagtctctaacacaacacacgaaagatgta 28107081  T
Q  213 agatggttacggtcaaggaacg 234  Q
    ||||||||||| ||| ||||||    
T  28107080 agatggttacgatcatggaacg 28107059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 19690923 - 19691073
Alignment:
Q  11 cagagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcg 110  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||||||||| |||||  |||||| ||||||     
T  19690923 cagagacgatagagcttgcactaaagtagctgagtcagactcgaagacaactcggtcacatctgttcacatcagcaaagtgaatgacatcgaataaggct 19691022  T
Q  111 attgcctccccctccaaaactgtcatatttttccgtttccattttgtttga 161  Q
    ||||||||||| |||||||| ||||||||| ||||||  ||||| ||||||    
T  19691023 attgcctccccttccaaaacggtcatatttgtccgttgtcatttcgtttga 19691073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 14680303 - 14680062
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    |||| ||||||||||||| || |||||  || || || || |||||||| |||| |||||||||  |||||||| | ||||  || ||||||||||| |     
T  14680303 gagatgatagagcttgcaatagagtagacgagtcggaatcaaagacaactcggttccatctgtttgcatcagcagagtgaagggcctcgagtaaggctac 14680204  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgc---ccccgggagtctctaacccaacatgcaaaagat 209  Q
    ||||||||||||||| ||||||||||||| ||| | ||||||  ||||||||  ||||||||||   || |||||||||||||| |||||||||||||||    
T  14680203 tgcctccccctccaatactgtcatattttcccgctgccatttcatttgagccataataaattgcccgccgcgggagtctctaacacaacatgcaaaagat 14680104  T
Q  210 gtaagatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    ||||  ||||| |||||| ||||||||  |||||||||||||    
T  14680103 gtaatgtggttgcggtcatggaacgcggtatccacattgcac 14680062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 30802040 - 30802201
Alignment:
Q  16 acgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgc 115  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||  ||||||| | |||||||| ||||| | ||| ||||| |||||||| | |||    
T  30802040 acgatagagcttgcactaaagtagctgaatcggactcgaagacaacctagtcccattttttcacatctgcaaagtaaatggcatctagtaaggctactgc 30802139  T
Q  116 ctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcc 177  Q
    ||||||| |||||||||||||||||  ||| | ||||||||||| |||| ||||||||||||    
T  30802140 ctcccccaccaaaactgtcatatttgcccgctgccattttgtttaagcccgaataaattgcc 30802201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 15053222 - 15053430
Alignment:
Q  14 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 113  Q
    ||||||||| | |||||||| |||||| || || |||||||||||||||  ||| ||| | ||||| |||||||   |||| |||||||||||||| | |    
T  15053222 agacgatagcgtttgcactagagtagctgagtcggactcgaagacaaccttgtctcattttttcacgtcagcaaggcgaatggcatcgagtaaggctact 15053321  T
Q  114 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 213  Q
    |||||||||||||| ||| ||||||||  ||| |  ||| ||||||||||| |||||||||| || | | |||||||||| ||||| |||||||||||||    
T  15053322 gcctccccctccaacactatcatatttacccgctgtcatcttgtttgagcccgaataaattgtccactgaagtctctaacacaacacgcaaaagatgtaa 15053421  T
Q  214 gatggttac 222  Q
    |||||||||    
T  15053422 gatggttac 15053430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 29368102 - 29368296
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    ||||||||||||||||||||| |||||  || || |||||||| |||    |||||||||| ||  |||||||||| ||||  || ||||||||||  ||    
T  29368102 gagacgatagagcttgcactatagtagatgagtcggactcgaaaacagttaggtcccatctattagcatcagcaaagtgaagggcctcgagtaaggatat 29368201  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagat 209  Q
    |||||||||||||||||||||||||||| |||| | ||||||  |||||||  |||||||||| || || ||||||| ||| ||||| |||||||||    
T  29368202 tgcctccccctccaaaactgtcatatttatccgctgccatttcttttgagc--gaataaattgtccacgagagtctcaaacacaacacgcaaaagat 29368296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 11731715 - 11731873
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    ||||| ||||||||||||||| | |   ||| || ||||||||||||||| | ||| || ||||| |||||||||| |||| ||  |||||  ||||       
T  11731715 gagacaatagagcttgcactatattgaaagagtcggactcgaagacaacctgttcctatatgttctcatcagcaaagtgaagagtctcgag--aggctgc 11731812  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaatt 174  Q
    ||||||||| ||||||||||||||||||  ||| | |||||||||||||||| | |||||||    
T  11731813 tgcctcccc-tccaaaactgtcatatttgcccgctgccattttgtttgagcccggataaatt 11731873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 1e-58; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 42340323 - 42340530
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    ||||||| |||||||||||||||||||| || || |||||||||||||| |||||||||||||||||||| ||||| |||||  ||||||||| ||| ||    
T  42340323 gagacgacagagcttgcactaaagtagctgagtctgactcgaagacaactcggtcccatctgttcacatctgcaaagtgaatgacatcgagtagggctat 42340422  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    ||||||||||||||| |||||||||| |  ||| | |||||||||||||||| |||||||||| || || ||||||||||| ||||| ||||||||||||    
T  42340423 tgcctccccctccaacactgtcatatctgcccgctgccattttgtttgagcccgaataaattgtccacgagagtctctaacacaacacgcaaaagatgta 42340522  T
Q  213 agatggtt 220  Q
    ||||||||    
T  42340523 agatggtt 42340530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 53497173 - 53496935
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    ||||||||||||||||||| | |||||  || || |||||||||||||||||||||||||||||  |||||||||| ||||  || || |||||||| |     
T  53497173 gagacgatagagcttgcacaagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcagcaaagtgaagggcctctagtaaggctac 53497074  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    |||||||||||| |||||||||| |||| |||| |  ||||||||||||||| ||||||||||||| |  ||||||||||| ||||| ||||||||||||    
T  53497073 tgcctccccctcaaaaactgtcacatttgtccgctgtcattttgtttgagcccgaataaattgcccacaagagtctctaacacaacacgcaaaagatgta 53496974  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    | ||||||||||||| |||||||| | ||||||||||||    
T  53496973 atatggttacggtcatggaacgcggcgtccacattgcac 53496935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 55199651 - 55199414
Alignment:
Q  14 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 113  Q
    ||||||||| |||||||| | |||||| || || |||| ||||||||||||||||||||||||  || || |||| ||||| |||||||||||||| | |    
T  55199651 agacgatagcgcttgcaccagagtagctgagtcggacttgaagacaacccggtcccatctgtttccaacaacaaagtgaatggcatcgagtaaggcaact 55199552  T
Q  114 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 213  Q
    ||||||||||||||||||||||||||| || | |  ||||| ||||||||| |||| |||||||| |||||||||||||| ||||| || ||||||||||    
T  55199551 gcctccccctccaaaactgtcatatttatcagctgtcatttcgtttgagcccgaatgaattgcccacgggagtctctaacacaacacgcgaaagatgtaa 55199452  T
Q  214 gatggttacggtcaaggaacgcgacatccacattgcac 251  Q
     ||  | ||||||| | |||| | ||||||||||||||    
T  55199451 tatattgacggtcatgaaacgtggcatccacattgcac 55199414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 63 - 241
Target Start/End: Original strand, 647307 - 647485
Alignment:
Q  63 cggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttccgtttccattttgtttgag 162  Q
    |||||||||||||||||||||||||| |||||  |||||||||||||   |||||||||||||| ||||||||||||   ||| | |||||| |||||||    
T  647307 cggtcccatctgttcacatcagcaaagtgaatgacatcgagtaaggctgctgcctccccctccataactgtcatattagcccgctgccatttcgtttgag 647406  T
Q  163 cctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatc 241  Q
    || | | ||||||||    | |||||||||| ||||| ||||||||||||| ||||||||| ||| |||||||| ||||    
T  647407 cccggaaaaattgcctagagaagtctctaacacaacacgcaaaagatgtaatatggttacgctcatggaacgcggcatc 647485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 647209 - 647305
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggc 109  Q
    ||||||||||||||||||||| |||||  || ||||||||||||| ||| ||||| |||||||||||||||||||| |||||  |||||||||||||    
T  647209 gagacgatagagcttgcactagagtagatgagtcagactcgaagataactcggtcacatctgttcacatcagcaaagtgaatgacatcgagtaaggc 647305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 46007440 - 46007204
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    ||||||||| || |||||||| |||||  ||||| |||||||||||| ||||  |||||||||||| |||  |||| ||||| ||||| |||||||| |     
T  46007440 gagacgatatagtttgcactagagtagttgaatcggactcgaagaca-cccg--cccatctgttcatatcgacaaagtgaatggcatcaagtaaggctac 46007344  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctct-aacccaacatgcaaaagatgt 211  Q
    || ||||||||  |||| |||| |||||  ||| | |||||| ||||||||| |||||||||  || || |||||||| |||  |||| ||||||||| |    
T  46007343 tgtctccccctaaaaaattgtcgtatttgcccgctgccatttcgtttgagcccgaataaattttccacgagagtctctaaacaaaacacgcaaaagatat 46007244  T
Q  212 aagatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    |||||||||||  | | ||||| || ||||||||||||||    
T  46007243 aagatggttacaataatggaacacggcatccacattgcac 46007204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 27941129 - 27941250
Alignment:
Q  102 agtaaggcgattgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatg 201  Q
    |||||||| | ||||||||||||||||||| |||||||| |||| | |||||||||||||| | |||||||||| || || || |||||||  ||||| |    
T  27941129 agtaaggctactgcctccccctccaaaactatcatatttgtccgctgccattttgtttgagtccgaataaattgtcctcgagaatctctaatacaacacg 27941228  T
Q  202 caaaagatgtaagatggttacg 223  Q
    ||||| || ||| |||||||||    
T  27941229 caaaaaatataatatggttacg 27941250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 11020258 - 11020353
Alignment:
Q  45 tcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatattt 140  Q
    ||||||||||||||||||| || |||| ||||| |||||||||| | ||||||||||||||| ||   || |||||||||||||| ||||||||||    
T  11020258 tcagactcgaagacaacccagttccatttgttcccatcagcaaagtaaatagcatcgagtaaagctgatgtctccccctccaaaagtgtcatattt 11020353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 48227550 - 48227319
Alignment:
Q  18 gatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagca-tcgagtaaggcgattgcc 116  Q
    |||||||||||||||| |||||  || || ||||| |||||||| ||||   |||  |||||||||||||| |||   |   ||||||||||| | |||     
T  48227550 gatagagcttgcactagagtagatgagtcggactcaaagacaactcggttttatccattcacatcagcaaagtgatggggtctcgagtaaggctactgca 48227451  T
Q  117 tccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagat 216  Q
    |||| |||||| || ||||| |||| ||  | |  ||| |||| |||| ||||||||||||| || ||||||||||| ||||| ||||||||||||| ||    
T  48227450 tcccactccaatacagtcatgttttcccactgctgtttcgtttaagcccgaataaattgcccgcgagagtctctaacacaacacgcaaaagatgtaacat 48227351  T
Q  217 ggttacggtcaaggaacgcgacatccacattg 248  Q
    ||||||||| | | || ||| |||||||||||    
T  48227350 ggttacggtaatgaaatgcggcatccacattg 48227319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 250
Target Start/End: Complemental strand, 2615568 - 2615397
Alignment:
Q  79 catcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgccc 178  Q
    |||||||||| ||||   ||||||||||||| | ||||||||||||||||||| ||||||||  ||| | ||| || ||||||||| |||| ||||||||    
T  2615568 catcagcaaagtgaacgacatcgagtaaggctactgcctccccctccaaaactatcatatttgcccgctgccaattcgtttgagcccgaatgaattgccc 2615469  T
Q  179 ccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatccacattgca 250  Q
     |   || ||||||| ||||   ||||| |||||| ||||||| | ||| | ||||||  ||||||||||||    
T  2615468 acaaaagcctctaacacaacgcacaaaaaatgtaatatggttatgatcatgaaacgcggtatccacattgca 2615397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 24176913 - 24176833
Alignment:
Q  11 cagagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattg 91  Q
    ||||||||||||||||||||||| |||||  |  |||||||||||||||||||  || |||||||||| |||| |||||||    
T  24176913 cagagacgatagagcttgcactagagtagttgtgtcagactcgaagacaacccaatctcatctgttcaaatcaacaaattg 24176833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 419 - 474
Target Start/End: Complemental strand, 33633765 - 33633710
Alignment:
Q  419 cttcaattatttttaaatgaaaaaatgtcaagattataacgggacctctgaattgt 474  Q
    |||||||| ||||||||||||||  ||||||||||||| | ||||||| |||||||    
T  33633765 cttcaattctttttaaatgaaaagttgtcaagattatatcaggacctccgaattgt 33633710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 27608949 - 27608999
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaaccc 63  Q
    |||||||||| |||||||||| |||||| || || ||||||||||||||||    
T  27608949 gagacgatagcgcttgcactagagtagctgagtcggactcgaagacaaccc 27608999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 34497418 - 34497468
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaaccc 63  Q
    |||||||||| |||||||||| |||||| || || ||||||||||||||||    
T  34497418 gagacgatagcgcttgcactagagtagctgagtcggactcgaagacaaccc 34497468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 327 - 89
Alignment:
Q  13 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 112  Q
    |||| ||||| |||||||||| |||||| || || |||||||||||||||||||||||| | ||| || ||||||| ||||| |||||||||||||| |     
T  327 gagatgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatatattcccaacagcaaagtgaatggcatcgagtaaggcaac 228  T
Q  113 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 212  Q
    ||||||||||||| ||||||||||||||   ||||  ||||| ||||||||| |||| |||||||| |||||||||||||  ||||| || ||||||       
T  227 tgcctccccctcccaaactgtcatatttgctcgttgtcatttcgtttgagcccgaatgaattgcccacgggagtctctaaaacaacacgcgaaagatngt 128  T
Q  213 agatggttacggtcaaggaacgcgacatccacattgcac 251  Q
    | ||| | ||||||| | ||| |||||||||||||||||    
T  127 atatgttgacggtcatgaaacacgacatccacattgcac 89  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 335 times since January 2019
Visitors: 3833