View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0621_low_10 (Length: 399)
Name: NF0621_low_10
Description: NF0621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0621_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 4444620 - 4444278
Alignment:
| Q |
1 |
ttccaagcttcttgcagtagtgactatgaagtatgtatata-----------tagcaatgttccaaacctcttgctgtagtggccagtagagtatgtata |
89 |
Q |
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| T |
4444620 |
ttccaagcttcttgcagtagtgactatgaagtatatatataaactatatatatagcaatgttccaaacctcttgctgtagtggccagttgagtatgtata |
4444521 |
T |
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| Q |
90 |
taagctatatatataactataaaggtttgttttataatgcaaaagtttgttggcaatttggcatgaataccaaattcctttctattgaactacaaatacc |
189 |
Q |
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| T |
4444520 |
taaactatatgtataactataaaggtttgttttataatgcaaaagtttgttggcaatttggcatgaataccaaattcctttctattgaactacaaatacc |
4444421 |
T |
|
| Q |
190 |
atcaataggaccactttctttaattttgagaagaaaaagtttttaaagtttattaaactagtctcttagagaaacagttggtatgaataaccaacttaag |
289 |
Q |
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| T |
4444420 |
atcaataggaccactttctttaattttgagaagaaaaagtctttaaagtttattaaactagtctcttagagaaacagttggtatgaataaccaacttaag |
4444321 |
T |
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| Q |
290 |
aaaacagttttcaaaaccagtttcaaatttgatttcagttcga |
332 |
Q |
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| T |
4444320 |
aaaacagttttcaaaaccagtttcaaatttgatttcagttcga |
4444278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 334 - 370
Target Start/End: Complemental strand, 4444260 - 4444224
Alignment:
| Q |
334 |
cccaatcaagaatgaaataaatttgaaactggttcac |
370 |
Q |
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| T |
4444260 |
cccaatcaagaatgaaataaatttgaaactggttcac |
4444224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 36 - 170
Target Start/End: Original strand, 37558892 - 37559029
Alignment:
| Q |
36 |
tatatatagcaatgttccaaacctcttgctgtagtggccagtagagtatgtatataagctatatatata---actataaaggtttgttttataatgcaaa |
132 |
Q |
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|||||||||||||||||||| |||||||| | |||| | ||| ||||||||||||| ||||||||||| |||||||| |||||| |||||||||||| |
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| T |
37558892 |
tatatatagcaatgttccaagcctcttgcagcagtgactagtgaagtatgtatataaactatatatatataaactataaaagtttgtgttataatgcaaa |
37558991 |
T |
|
| Q |
133 |
agtttgttggcaatttggcatgaataccaaattccttt |
170 |
Q |
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| T |
37558992 |
agcttgttggcaatttggcatggttaccaaattccttt |
37559029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 41553982 - 41554050
Alignment:
| Q |
80 |
agtatgtatataagctatatatataactataaaggtttgttttataatgcaaaagtttgttggcaattt |
148 |
Q |
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||||||||||||| || |||||||||||||||| | |||| || |||||||||| ||||||| |||||| |
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| T |
41553982 |
agtatgtatataaactttatatataactataaatgcttgtgttgtaatgcaaaattttgttgccaattt |
41554050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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