View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0621_low_11 (Length: 371)
Name: NF0621_low_11
Description: NF0621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0621_low_11 |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 117 - 356
Target Start/End: Complemental strand, 7327452 - 7327213
Alignment:
| Q |
117 |
tgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatcaaagatcttactggaagccttgataa |
216 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7327452 |
tgaggtgcattttgatgaatttaggatcagaaataatagtgttccaagacttacacacacacttgatctgcatcaaagatcttactggaagccttgataa |
7327353 |
T |
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| Q |
217 |
gattttggccataacctcgtcggggagatctactgatggcggcagattggagtgagagcgaagacgctgcaagttcggtggctgtgtattcatcggagca |
316 |
Q |
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| T |
7327352 |
gatttcggccataacctcgtcggggagtgtttctgacggcggcagattggattgagagcggagacgccgcaagttcggcagctgcgtattcatcagagcg |
7327253 |
T |
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| Q |
317 |
ggctgtgtcggagcagttgaaagttgacgatgctcgctat |
356 |
Q |
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| T |
7327252 |
agcggtgtgggtgcagatgaaagttgacgacgctccctat |
7327213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 117 - 315
Target Start/End: Original strand, 7312061 - 7312259
Alignment:
| Q |
117 |
tgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatcaaagatcttactggaagccttgataa |
216 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
7312061 |
tgaggtgcattttgatgaatttaggatcagagataatagtgttccaagacttactcacacacttgatctgcatcaaagttcttactggaagccatgataa |
7312160 |
T |
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| Q |
217 |
gattttggccataacctcgtcggggagatctactgatggcggcagattggagtgagagcgaagacgctgcaagttcggtggctgtgtattcatcggagc |
315 |
Q |
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| T |
7312161 |
gatttcggcgatgacctcatcgaggagggttactgatggcggcagattggattgagagcggagacgccgcgagttcggcagctgtgtattcatcagagc |
7312259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 7306930 - 7307007
Alignment:
| Q |
117 |
tgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatcaaag |
194 |
Q |
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| T |
7306930 |
tgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatcaaag |
7307007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 20455767 - 20455701
Alignment:
| Q |
119 |
aggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatct |
185 |
Q |
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| T |
20455767 |
aggtgtattttgacgaatttagaatcggagataagggttttccaagacttacatacacacttcatct |
20455701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 17878739 - 17878854
Alignment:
| Q |
5 |
cacatataagattgaaaaactctaatatacaaagtcaaaaggaacttaacgaacaactaacaagtaaaatctgaaattgatatacctgaaacaaactgaa |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17878739 |
cacatataagattgaaaaactctaatatacaaagtcaaaaggaacttaatgaacaactaacaagtaaaatctaaaattgatatacctgaaacaaactgaa |
17878838 |
T |
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| Q |
105 |
gagatccttttatgag |
120 |
Q |
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| T |
17878839 |
gagatccttttatgag |
17878854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 243
Target Start/End: Complemental strand, 42297388 - 42297270
Alignment:
| Q |
125 |
attttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatcaaagatcttactggaagccttgataagattttgg |
224 |
Q |
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||||||| ||||||||||| ||| || | |||||||||||| ||| ||||| || |||||||||| |||| | |||||||||| |||||| |||| || |
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| T |
42297388 |
attttgacgaatttaggattggagattagagtgttccaagaaatacttacacatttcatctgcatcagagatttcactggaagccatgataatatttcgg |
42297289 |
T |
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| Q |
225 |
ccataacctcgtcggggag |
243 |
Q |
| |
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|||| |||||||||||| |
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| T |
42297288 |
tgataagctcgtcggggag |
42297270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 14772009 - 14772090
Alignment:
| Q |
13 |
agattgaaaaactctaatatacaaagtcaaaaggaacttaacgaacaactaacaagtaaaatctgaaattgatatacctgaa |
94 |
Q |
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| T |
14772009 |
agatttaacaactttaatatacaaagttaaaaggaacttaacgaacaattaacaagttaacctggaaaatgatatacctgaa |
14772090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 15046154 - 15046199
Alignment:
| Q |
27 |
taatatacaaagtcaaaaggaacttaacgaacaactaacaagtaaa |
72 |
Q |
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| T |
15046154 |
taatatacaaagtcaaaaggaatttaatgagcaactaacaagtaaa |
15046199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 3417 - 3315
Alignment:
| Q |
119 |
aggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatcaaagatcttactggaagccttgataaga |
218 |
Q |
| |
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||||||||||||| ||||||||||||||| || | ||||||||||| | || ||| |||| ||||||||||| ||| | |||||||||| ||||| || |
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| T |
3417 |
aggtgcattttgacgaatttaggatcggagatgagagtgttccaagtatgacttacagacttcatctgcatcaatgatttgactggaagccatgatagga |
3318 |
T |
|
| Q |
219 |
ttt |
221 |
Q |
| |
|
||| |
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|
| T |
3317 |
ttt |
3315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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