View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0621_low_16 (Length: 301)
Name: NF0621_low_16
Description: NF0621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0621_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 4075118 - 4075399
Alignment:
| Q |
10 |
ttgtcatctcattttatttccatataccttttcactt-caactgtggtaagtaacaaccaaatttgactgtcttacagtgtcacaattaaccaataaatg |
108 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4075118 |
ttgtcatctcattttatttccatatactttttcactttcaactgtggtaagtaacaaccaaatttgactgtcttacagtgtcacaattaaccaataaatg |
4075217 |
T |
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| Q |
109 |
aaatgattcaaaaacagcgaagaacatataccgtcacttcataaaaatcaacacatagtaacaaaacaacatttggccccatctccagcaattcttgtat |
208 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4075218 |
aaatgattcaaaaacagcgaagcacatataccgtcacttcataaaaatcaacacatagtaacaaaacaacatttggccccatctccagcaattcttgtat |
4075317 |
T |
|
| Q |
209 |
acatttcaagttatggagaatcacatcagaagacaaattctagaaaaaccttccaccaataaagtttcattctgcattctct |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4075318 |
acatttcaagttatggagaatcacatcagaagacaaattctagaaaaaccttccaccaataaagtttcattctgcattctct |
4075399 |
T |
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