View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0621_low_21 (Length: 252)
Name: NF0621_low_21
Description: NF0621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0621_low_21 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 44 - 252
Target Start/End: Original strand, 7897778 - 7897995
Alignment:
| Q |
44 |
gatcgaacatttcatctctgaaggcaaaagttattattatcagagacaaaattaaagtaatggacaaggaaacaagttcagcgtataaagaaatggaagc |
143 |
Q |
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| T |
7897778 |
gatcgaacatttcatctctgaaggcaaaagttattattatcagaggcaaaattaaagtaatggacaacgaaacatgttcagcgtataaagaaatggaagc |
7897877 |
T |
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| Q |
144 |
tataataaacacttaagcta---------cactcatcacattcagaacacaatatacccacacacacaaatgtaatctataccacaaaactcaatgaaac |
234 |
Q |
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| T |
7897878 |
tataataaacacttaagctacattcagttcattcatcacattcagaacacaatatacccacacacacaaatgtaatctataccacaaaactcaatgaaac |
7897977 |
T |
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| Q |
235 |
caaacctttccacacaac |
252 |
Q |
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| T |
7897978 |
caaacctttccacacaac |
7897995 |
T |
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